Wall clock time and date at job start Tue Mar 31 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99744 * 2 1 4 4 S 1.65594 * 120.00550 * 179.97438 * 2 1 3 5 5 O 1.42105 * 104.27352 * 333.93082 * 4 2 1 6 6 O 1.42102 * 104.28268 * 206.07495 * 4 2 1 7 7 C 1.81400 * 104.45022 * 90.00089 * 4 2 1 8 8 C 1.53007 * 109.46814 * 180.02562 * 7 4 2 9 9 N 1.46504 * 109.46574 * 180.02562 * 8 7 4 10 10 C 1.39678 * 119.99521 * 179.97438 * 9 8 7 11 11 C 1.39292 * 119.94031 * 359.97438 * 10 9 8 12 12 C 1.38702 * 120.39886 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.86249 * 179.97438 * 12 11 10 14 14 C 1.37925 * 120.27631 * 0.02562 * 12 11 10 15 15 C 1.40716 * 119.86478 * 0.02562 * 14 12 11 16 16 C 1.41413 * 120.19025 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00266 * 24.39157 * 16 15 14 18 18 C 1.39930 * 119.99637 * 204.38915 * 16 15 14 19 19 N 1.30827 * 119.99849 * 17.84888 * 18 16 15 20 20 Si 1.86798 * 119.99870 * 197.84838 * 18 16 15 21 21 H 1.48500 * 109.46892 * 90.00139 * 20 18 16 22 22 H 1.48495 * 109.46876 * 209.99840 * 20 18 16 23 23 H 1.48498 * 109.47060 * 330.00129 * 20 18 16 24 24 C 1.38298 * 119.93623 * 179.97438 * 10 9 8 25 25 H 1.08999 * 109.47378 * 240.00001 * 1 2 3 26 26 H 1.08999 * 109.47582 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46782 * 120.00101 * 1 2 3 28 28 H 1.09001 * 109.46947 * 269.99860 * 3 2 1 29 29 H 1.09004 * 109.47051 * 29.99455 * 3 2 1 30 30 H 1.09001 * 109.47070 * 149.99851 * 3 2 1 31 31 H 1.08994 * 109.46833 * 60.00540 * 7 4 2 32 32 H 1.08995 * 109.47160 * 300.00230 * 7 4 2 33 33 H 1.08994 * 109.47205 * 60.00491 * 8 7 4 34 34 H 1.09003 * 109.47153 * 299.99575 * 8 7 4 35 35 H 0.96997 * 120.00306 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.80014 * 359.97216 * 11 10 9 37 37 H 1.07996 * 120.06775 * 179.97438 * 14 12 11 38 38 H 0.97004 * 119.99827 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.13563 * 359.73298 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6058 7 6 2.5194 -1.8268 -1.7558 8 6 3.2811 -3.1471 -1.8890 9 7 3.4645 -3.4639 -3.3076 10 6 4.1375 -4.6294 -3.6815 11 6 4.6343 -5.4891 -2.7046 12 6 5.3036 -6.6491 -3.0651 13 9 5.7815 -7.4750 -2.1086 14 6 5.4844 -6.9626 -4.3960 15 6 4.9881 -6.1017 -5.3923 16 6 5.1691 -6.4166 -6.7590 17 1 5.3145 -7.4430 -7.0620 18 6 5.1598 -5.3984 -7.7188 19 7 5.3352 -4.1542 -7.3542 20 14 4.8969 -5.8155 -9.5205 21 1 3.4450 -5.7804 -9.8300 22 1 5.6076 -4.8237 -10.3669 23 1 5.4293 -7.1740 -9.7968 24 6 4.3094 -4.9275 -5.0209 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5834 -1.0277 29 1 1.6082 2.0285 0.5138 30 1 3.1498 1.1385 0.5139 31 1 3.0867 -1.0296 -2.2361 32 1 1.5453 -1.9196 -2.2358 33 1 2.7135 -3.9441 -1.4088 34 1 4.2553 -3.0546 -1.4089 35 1 3.1191 -2.8641 -3.9871 36 1 4.4975 -5.2509 -1.6601 37 1 6.0064 -7.8666 -4.6730 38 1 5.3291 -3.4484 -8.0196 39 1 3.9206 -4.2633 -5.7785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168868840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:23 Heat of formation + Delta-G solvation = -92.645157 kcal Electronic energy + Delta-G solvation = -23743.861395 eV Core-core repulsion = 19920.960399 eV Total energy + Delta-G solvation = -3822.900996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.70707 -37.98904 -37.36081 -36.55769 -36.07198 -35.57156 -33.47664 -31.21778 -29.31997 -28.44527 -27.25103 -25.55628 -25.08763 -23.18612 -21.08918 -20.41343 -19.12250 -18.02387 -17.60690 -16.73705 -16.62543 -16.02478 -15.33263 -15.31335 -15.11216 -14.76149 -14.58165 -14.50500 -14.32989 -14.06905 -13.73975 -13.39881 -13.06074 -12.94230 -12.60597 -12.40962 -12.28355 -12.24681 -11.91794 -11.89553 -11.82454 -11.59940 -11.20623 -11.12478 -11.00661 -10.59575 -10.52698 -10.13815 -9.71607 -9.41440 -9.41111 -8.79579 -7.41522 -6.90142 -6.41350 -4.50812 -0.04032 2.34693 2.69551 2.91605 3.02542 3.06408 3.16840 3.52804 3.86400 3.89649 4.10476 4.28544 4.47591 4.51198 4.58689 4.96494 5.02631 5.16777 5.24643 5.41658 5.43720 5.51868 5.53409 5.66718 5.68857 5.71918 6.11768 6.31315 6.59661 6.71111 6.95300 7.11601 7.21575 7.45138 7.65802 7.87512 7.98124 8.25505 8.45412 8.62092 8.81119 8.87641 10.08489 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003117 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.186844 B = 8980.659678 C =10241.178207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.010 6.010 3 C 0.081 3.919 4 S 2.620 3.380 5 O -0.948 6.948 6 O -0.949 6.949 7 C -0.643 4.643 8 C 0.147 3.853 9 N -0.750 5.750 10 C 0.235 3.765 11 C -0.336 4.336 12 C 0.145 3.855 13 F -0.167 7.167 14 C -0.287 4.287 15 C 0.158 3.842 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.237 4.237 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.280 0.720 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 12.704 7.977 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.849 5.849 3 C -0.064 4.064 4 S 2.711 3.289 5 O -0.938 6.938 6 O -0.939 6.939 7 C -0.772 4.772 8 C 0.020 3.980 9 N -0.385 5.385 10 C 0.136 3.864 11 C -0.359 4.359 12 C 0.125 3.875 13 F -0.146 7.146 14 C -0.308 4.308 15 C 0.154 3.846 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.141 4.141 19 N -0.410 5.410 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.261 4.261 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.977 12.461 8.888 17.744 hybrid contribution -0.259 0.352 -1.695 1.751 sum -9.236 12.813 7.192 17.355 Atomic orbital electron populations 1.21553 0.78129 1.03591 1.02297 1.57384 1.15326 1.21888 1.90295 1.21674 0.97721 0.84944 1.02111 1.04854 0.73905 0.73016 0.77119 1.93604 1.64587 1.62357 1.73274 1.93599 1.44086 1.82830 1.73371 1.30907 1.10624 1.07940 1.27681 1.20683 0.98602 0.91563 0.87139 1.44209 1.65592 1.24972 1.03744 1.17274 0.91014 0.85003 0.93098 1.19739 1.18802 1.00016 0.97351 1.17213 0.96691 0.88629 0.84958 1.91334 1.86884 1.71847 1.64528 1.20858 1.14047 1.05463 0.90440 1.17066 0.85943 0.89300 0.92287 1.19590 1.43248 0.94879 0.90790 0.90042 1.25932 0.91937 0.94439 1.01802 1.69859 1.33512 1.00926 1.36683 0.86278 0.79411 0.79640 0.81222 1.19227 1.20303 1.18487 1.20740 1.10463 1.03209 0.91709 0.91268 0.90218 0.92223 0.92655 0.90615 0.89597 0.84484 0.84585 0.91583 0.91571 0.76955 0.88240 0.87922 0.90871 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.26 59.84 0.61 1.18 16 2 N -1.01 -8.24 3.52 -129.20 -0.45 -8.70 16 3 C 0.08 0.52 10.61 59.85 0.64 1.15 16 4 S 2.62 29.06 5.43 -107.50 -0.58 28.48 16 5 O -0.95 -13.30 17.10 -57.54 -0.98 -14.28 16 6 O -0.95 -13.33 16.57 -57.54 -0.95 -14.28 16 7 C -0.64 -6.58 6.29 37.16 0.23 -6.34 16 8 C 0.15 2.20 4.91 -4.04 -0.02 2.18 16 9 N -0.75 -13.47 5.73 -58.69 -0.34 -13.80 16 10 C 0.24 5.34 6.64 -83.87 -0.56 4.78 16 11 C -0.34 -7.80 9.30 -39.02 -0.36 -8.16 16 12 C 0.14 3.53 7.28 -39.52 -0.29 3.24 16 13 F -0.17 -3.87 17.26 2.25 0.04 -3.83 16 14 C -0.29 -7.28 9.77 -38.76 -0.38 -7.66 16 15 C 0.16 4.15 5.57 -106.86 -0.60 3.55 16 16 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.08 1.87 5.14 -17.35 -0.09 1.79 16 19 N -0.79 -19.34 10.96 55.55 0.61 -18.73 16 20 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 24 C -0.24 -5.92 8.53 -38.66 -0.33 -6.25 16 25 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 26 H 0.08 0.32 7.79 -51.93 -0.40 -0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.34 7.92 -51.93 -0.41 -0.07 16 30 H 0.09 0.64 6.91 -51.93 -0.36 0.28 16 31 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 34 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 35 H 0.40 6.39 8.48 -40.82 -0.35 6.04 16 36 H 0.10 2.11 6.70 -52.49 -0.35 1.76 16 37 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 38 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 39 H 0.12 3.08 6.17 -52.49 -0.32 2.76 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -32.37 345.40 -9.06 -41.44 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.09 Total: 8.24 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.48 Total: -22.65 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.18 Total: -41.23 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.94 Total: -28.56 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 29.06 SS G_CDS: -0.58 Total: 28.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.37 -9.06 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168868840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.209 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds