Wall clock time and date at job start Tue Mar 31 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46506 * 119.99744 * 2 1 4 4 S 1.65594 * 120.00550 * 179.97438 * 2 1 3 5 5 O 1.42105 * 104.27352 * 333.93082 * 4 2 1 6 6 O 1.42102 * 104.28268 * 206.07495 * 4 2 1 7 7 C 1.81400 * 104.45022 * 90.00089 * 4 2 1 8 8 C 1.53007 * 109.46814 * 180.02562 * 7 4 2 9 9 N 1.46504 * 109.46574 * 180.02562 * 8 7 4 10 10 C 1.39678 * 119.99521 * 179.97438 * 9 8 7 11 11 C 1.39292 * 119.94031 * 359.97438 * 10 9 8 12 12 C 1.38702 * 120.39886 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.86249 * 179.97438 * 12 11 10 14 14 C 1.37925 * 120.27631 * 0.02562 * 12 11 10 15 15 C 1.40716 * 119.86478 * 0.02562 * 14 12 11 16 16 C 1.41413 * 120.19025 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00266 * 24.39157 * 16 15 14 18 18 C 1.39930 * 119.99637 * 204.38915 * 16 15 14 19 19 N 1.30827 * 119.99849 * 17.84888 * 18 16 15 20 20 Si 1.86798 * 119.99870 * 197.84838 * 18 16 15 21 21 H 1.48500 * 109.46892 * 90.00139 * 20 18 16 22 22 H 1.48495 * 109.46876 * 209.99840 * 20 18 16 23 23 H 1.48498 * 109.47060 * 330.00129 * 20 18 16 24 24 C 1.38298 * 119.93623 * 179.97438 * 10 9 8 25 25 H 1.08999 * 109.47378 * 240.00001 * 1 2 3 26 26 H 1.08999 * 109.47582 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46782 * 120.00101 * 1 2 3 28 28 H 1.09001 * 109.46947 * 269.99860 * 3 2 1 29 29 H 1.09004 * 109.47051 * 29.99455 * 3 2 1 30 30 H 1.09001 * 109.47070 * 149.99851 * 3 2 1 31 31 H 1.08994 * 109.46833 * 60.00540 * 7 4 2 32 32 H 1.08995 * 109.47160 * 300.00230 * 7 4 2 33 33 H 1.08994 * 109.47205 * 60.00491 * 8 7 4 34 34 H 1.09003 * 109.47153 * 299.99575 * 8 7 4 35 35 H 0.96997 * 120.00306 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.80014 * 359.97216 * 11 10 9 37 37 H 1.07996 * 120.06775 * 179.97438 * 14 12 11 38 38 H 0.97004 * 119.99827 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.13563 * 359.73298 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6058 7 6 2.5194 -1.8268 -1.7558 8 6 3.2811 -3.1471 -1.8890 9 7 3.4645 -3.4639 -3.3076 10 6 4.1375 -4.6294 -3.6815 11 6 4.6343 -5.4891 -2.7046 12 6 5.3036 -6.6491 -3.0651 13 9 5.7815 -7.4750 -2.1086 14 6 5.4844 -6.9626 -4.3960 15 6 4.9881 -6.1017 -5.3923 16 6 5.1691 -6.4166 -6.7590 17 1 5.3145 -7.4430 -7.0620 18 6 5.1598 -5.3984 -7.7188 19 7 5.3352 -4.1542 -7.3542 20 14 4.8969 -5.8155 -9.5205 21 1 3.4450 -5.7804 -9.8300 22 1 5.6076 -4.8237 -10.3669 23 1 5.4293 -7.1740 -9.7968 24 6 4.3094 -4.9275 -5.0209 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5834 -1.0277 29 1 1.6082 2.0285 0.5138 30 1 3.1498 1.1385 0.5139 31 1 3.0867 -1.0296 -2.2361 32 1 1.5453 -1.9196 -2.2358 33 1 2.7135 -3.9441 -1.4088 34 1 4.2553 -3.0546 -1.4089 35 1 3.1191 -2.8641 -3.9871 36 1 4.4975 -5.2509 -1.6601 37 1 6.0064 -7.8666 -4.6730 38 1 5.3291 -3.4484 -8.0196 39 1 3.9206 -4.2633 -5.7785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168868840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:23 Heat of formation + Delta-G solvation = -115.255484 kcal Electronic energy + Delta-G solvation = -23744.841852 eV Core-core repulsion = 19920.960399 eV Total energy + Delta-G solvation = -3823.881454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.60716 -39.73273 -38.33992 -37.28371 -37.15150 -36.89122 -35.24407 -32.63717 -31.18501 -28.92600 -28.85552 -27.42137 -25.73773 -24.44207 -22.91399 -22.16273 -19.98789 -19.53481 -18.65970 -18.12824 -17.46150 -17.37889 -16.95796 -16.86099 -16.41634 -16.33832 -16.13523 -15.75304 -15.57240 -15.32772 -15.15894 -14.61880 -14.10104 -13.85277 -13.73738 -13.62063 -13.43182 -13.26947 -13.23199 -13.15242 -12.80939 -12.72542 -12.56391 -12.53274 -12.37675 -12.20242 -12.09174 -11.94316 -11.50199 -11.16418 -10.54240 -10.01147 -9.33114 -8.71201 -8.14508 -6.44987 -0.91059 0.86820 1.03662 1.42087 1.54345 1.54743 1.59607 2.22125 2.50753 2.67593 2.85195 3.07017 3.32994 3.61802 3.75971 3.81625 3.86097 4.20659 4.47681 4.48963 4.55509 4.57877 4.64463 4.69226 4.78560 4.88092 4.98754 5.01429 5.03806 5.09271 5.22765 5.43000 5.56252 5.63311 5.77448 6.04068 6.05649 6.39622 6.75958 6.85452 6.90400 7.07242 8.29493 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003117 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.186844 B = 8980.659678 C =10241.178207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.005 6.005 3 C 0.071 3.929 4 S 2.633 3.367 5 O -0.982 6.982 6 O -0.983 6.983 7 C -0.629 4.629 8 C 0.133 3.867 9 N -0.739 5.739 10 C 0.244 3.756 11 C -0.344 4.344 12 C 0.139 3.861 13 F -0.162 7.162 14 C -0.313 4.313 15 C 0.133 3.867 16 C -0.490 4.490 17 H 0.078 0.922 18 C 0.041 3.959 19 N -0.808 5.808 20 Si 0.985 3.015 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.262 1.262 24 C -0.257 4.257 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.291 0.709 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 14.693 7.075 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.845 5.845 3 C -0.073 4.073 4 S 2.726 3.274 5 O -0.972 6.972 6 O -0.974 6.974 7 C -0.758 4.758 8 C 0.006 3.994 9 N -0.373 5.373 10 C 0.142 3.858 11 C -0.368 4.368 12 C 0.120 3.880 13 F -0.141 7.141 14 C -0.334 4.334 15 C 0.130 3.870 16 C -0.518 4.518 17 H 0.096 0.904 18 C -0.176 4.176 19 N -0.433 5.433 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.185 1.185 24 C -0.282 4.282 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.307 14.484 8.031 19.506 hybrid contribution 0.127 -0.170 -1.332 1.349 sum -10.180 14.314 6.699 18.799 Atomic orbital electron populations 1.21809 0.76773 1.05516 1.02501 1.57136 1.16076 1.21249 1.90078 1.21906 0.97340 0.84446 1.03625 1.04184 0.72942 0.73167 0.77125 1.93558 1.65209 1.64027 1.74426 1.93553 1.45823 1.83442 1.74542 1.30796 1.11735 1.05950 1.27319 1.20885 0.99281 0.94173 0.85035 1.44242 1.64107 1.23406 1.05560 1.17315 0.90145 0.86076 0.92254 1.19983 1.18590 0.99709 0.98488 1.17361 0.96737 0.89110 0.84823 1.91334 1.86818 1.71776 1.64170 1.20942 1.15467 1.05961 0.91060 1.17414 0.86504 0.90172 0.92930 1.19840 1.45064 0.95424 0.91514 0.90397 1.26742 0.90869 0.93953 1.06000 1.69880 1.32952 1.01831 1.38635 0.85160 0.79576 0.79381 0.75339 1.18427 1.19071 1.18546 1.20711 1.11611 1.03258 0.92603 0.92412 0.87444 0.90860 0.90621 0.88399 0.91067 0.82180 0.81979 0.91641 0.92016 0.75769 0.86407 0.88067 0.89792 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.26 127.77 1.31 2.10 16 2 N -1.00 -14.04 3.52 -562.68 -1.98 -16.02 16 3 C 0.07 0.73 10.61 127.77 1.36 2.08 16 4 S 2.63 54.93 5.43 -56.49 -0.31 54.62 16 5 O -0.98 -26.89 17.10 -127.65 -2.18 -29.08 16 6 O -0.98 -27.13 16.57 -127.65 -2.12 -29.25 16 7 C -0.63 -11.23 6.29 71.98 0.45 -10.78 16 8 C 0.13 3.74 4.91 86.38 0.42 4.17 16 9 N -0.74 -25.45 5.73 -339.59 -1.95 -27.39 16 10 C 0.24 11.01 6.64 38.16 0.25 11.26 16 11 C -0.34 -15.95 9.30 22.63 0.21 -15.74 16 12 C 0.14 6.89 7.28 22.31 0.16 7.06 16 13 F -0.16 -7.55 17.26 44.97 0.78 -6.78 16 14 C -0.31 -16.40 9.77 22.80 0.22 -16.17 16 15 C 0.13 7.21 5.57 -21.31 -0.12 7.09 16 16 C -0.49 -25.86 9.05 23.46 0.21 -25.65 16 17 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 18 C 0.04 1.99 5.14 85.25 0.44 2.43 16 19 N -0.81 -39.62 10.96 21.82 0.24 -39.38 16 20 Si 0.98 36.23 29.60 68.60 2.03 38.26 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.26 -13.01 8.53 22.86 0.19 -12.81 16 25 H 0.06 0.72 7.90 -2.39 -0.02 0.70 16 26 H 0.11 0.49 7.79 -2.39 -0.02 0.47 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.58 7.92 -2.38 -0.02 0.56 16 30 H 0.07 0.96 6.91 -2.39 -0.02 0.94 16 31 H 0.16 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 1.88 7.94 -2.39 -0.02 1.86 16 34 H 0.06 1.82 7.94 -2.39 -0.02 1.80 16 35 H 0.41 12.29 8.48 -92.71 -0.79 11.50 16 36 H 0.12 4.92 6.70 -2.91 -0.02 4.91 16 37 H 0.10 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.29 12.70 8.30 -92.71 -0.77 11.93 16 39 H 0.12 5.94 6.17 -2.91 -0.02 5.93 16 Total: -1.00 -70.89 345.40 -0.07 -70.96 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.29 Total: 29.02 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 5.12 Total: -44.96 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.69 Total: -82.80 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -4.30 Total: -58.32 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.78 Total: -6.78 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.31 Total: 54.62 kcal Total: -70.89 -0.07 -70.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168868840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.296 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds