Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48491 * 109.47199 * 240.00136 * 3 2 1 5 5 H 1.48500 * 109.46855 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47087 * 119.99710 * 3 2 1 7 7 C 1.38813 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00408 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99634 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99378 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46370 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46791 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47430 * 179.97438 * 12 11 10 14 14 C 1.34770 * 120.00479 * 179.97438 * 13 12 11 15 15 O 1.21538 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.48026 * 120.00318 * 179.97438 * 14 13 12 17 17 C 1.39903 * 119.80819 * 0.02562 * 16 14 13 18 18 C 1.36586 * 120.29830 * 179.97438 * 17 16 14 19 19 C 1.39425 * 119.86327 * 0.02562 * 18 17 16 20 20 C 1.47766 * 121.35051 * 179.70964 * 19 18 17 21 21 O 1.21895 * 121.40106 * 0.25790 * 20 19 18 22 22 C 1.41929 * 117.19700 * 179.79905 * 20 19 18 23 23 C 1.34615 * 119.60215 * 0.46662 * 22 20 19 24 24 O 1.33681 * 122.83974 * 359.76834 * 23 22 20 25 25 C 1.34882 * 122.43553 * 359.97438 * 24 23 22 26 26 C 1.38901 * 120.91741 * 179.97438 * 25 24 23 27 27 H 0.96998 * 119.99666 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00187 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47678 * 59.99731 * 10 9 7 30 30 H 1.08996 * 109.46840 * 299.99501 * 10 9 7 31 31 H 1.08991 * 109.47418 * 59.99924 * 11 10 9 32 32 H 1.08996 * 109.47095 * 299.99178 * 11 10 9 33 33 H 1.08997 * 109.47393 * 59.99481 * 12 11 10 34 34 H 1.09002 * 109.46973 * 299.99868 * 12 11 10 35 35 H 0.97008 * 119.99779 * 359.97438 * 13 12 11 36 36 H 1.07996 * 119.85148 * 359.97438 * 17 16 14 37 37 H 1.07993 * 120.06388 * 180.02562 * 18 17 16 38 38 H 1.08004 * 120.19969 * 180.18941 * 22 20 19 39 39 H 1.08006 * 118.57734 * 179.75555 * 23 22 20 40 40 H 1.07993 * 120.17575 * 0.04993 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8286 -6.1447 -0.0018 13 7 0.8767 -7.2583 -0.0018 14 6 1.3258 -8.5289 -0.0029 15 8 2.5207 -8.7510 -0.0033 16 6 0.3639 -9.6540 -0.0023 17 6 -1.0107 -9.3938 -0.0012 18 6 -1.9071 -10.4243 -0.0012 19 6 -1.4505 -11.7417 -0.0017 20 6 -2.3910 -12.8813 0.0046 21 8 -3.5977 -12.7090 0.0059 22 6 -1.8303 -14.1852 -0.0009 23 6 -0.4924 -14.3336 -0.0019 24 8 0.3520 -13.2973 -0.0026 25 6 -0.0736 -12.0173 -0.0026 26 6 0.8320 -10.9641 -0.0028 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6847 -3.7146 0.8894 30 1 2.6846 -3.7145 -0.8905 31 1 0.4374 -4.7617 -0.8913 32 1 0.4368 -4.7622 0.8886 33 1 2.4553 -6.2030 0.8881 34 1 2.4553 -6.2020 -0.8918 35 1 -0.0771 -7.0810 -0.0011 36 1 -1.3646 -8.3735 -0.0004 37 1 -2.9674 -10.2191 -0.0008 38 1 -2.4732 -15.0530 0.0003 39 1 -0.0835 -15.3333 -0.0021 40 1 1.8938 -11.1612 -0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171363861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -69.414727 kcal Electronic energy + Delta-G solvation = -24053.457699 eV Core-core repulsion = 20219.580404 eV Total energy + Delta-G solvation = -3833.877296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96805 -41.16312 -39.84600 -38.80552 -37.51806 -36.01033 -33.89392 -33.86983 -32.54536 -31.98689 -31.04840 -27.42217 -25.97860 -25.78312 -24.33606 -23.37104 -22.61144 -22.33615 -20.24409 -19.52971 -19.13169 -18.79104 -17.87761 -17.42736 -17.27155 -16.86237 -16.80679 -16.54899 -15.68826 -15.56394 -15.45339 -15.30899 -15.27896 -15.24434 -15.02360 -14.70009 -14.17288 -13.99282 -13.54518 -13.43330 -13.28219 -12.78310 -12.61839 -12.43615 -12.40113 -12.09654 -12.04801 -11.79744 -11.28474 -10.95459 -10.92673 -10.77808 -10.50477 -10.14928 -9.57797 -9.00710 -7.95885 -5.24807 -0.95755 -0.31712 0.33015 1.23024 1.29940 1.48489 1.51298 1.57441 2.00296 2.07276 2.56843 2.64996 2.88705 3.21894 3.38025 3.43710 3.68673 3.74503 3.79090 3.86105 4.05129 4.10066 4.24544 4.29381 4.44450 4.58149 4.59894 4.71340 4.74398 4.76061 4.88940 4.90102 4.95263 5.12630 5.21985 5.30352 5.33195 5.36943 5.49771 6.10344 6.26793 6.37427 6.44426 7.01339 7.33478 8.08873 8.32021 9.27287 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.033689 B = 0.001833 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.923243 B =15270.877149 C =16076.051583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.121 4.121 12 C 0.132 3.868 13 N -0.706 5.706 14 C 0.556 3.444 15 O -0.567 6.567 16 C -0.076 4.076 17 C -0.105 4.105 18 C -0.043 4.043 19 C -0.218 4.218 20 C 0.408 3.592 21 O -0.515 6.515 22 C -0.355 4.355 23 C 0.170 3.830 24 O -0.219 6.219 25 C 0.136 3.864 26 C -0.083 4.083 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.178 0.822 39 H 0.260 0.740 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -32.960 -0.008 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.159 4.159 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.343 3.657 15 O -0.447 6.447 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.061 4.061 19 C -0.220 4.220 20 C 0.297 3.703 21 O -0.401 6.401 22 C -0.375 4.375 23 C 0.105 3.895 24 O -0.123 6.123 25 C 0.091 3.909 26 C -0.102 4.102 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.184 0.816 37 H 0.171 0.829 38 H 0.195 0.805 39 H 0.275 0.725 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.045 -32.910 -0.007 32.926 hybrid contribution -0.730 1.254 0.004 1.451 sum -1.775 -31.656 -0.003 31.706 Atomic orbital electron populations 1.69796 1.06533 1.26232 1.59291 1.25583 0.96470 1.01153 1.03562 0.85200 0.77217 0.79071 0.78202 1.20390 1.22055 1.20402 1.19618 0.91585 0.85445 1.41564 0.90674 1.42536 1.05739 1.01161 1.89571 1.20690 0.94106 0.84694 0.98097 1.21722 0.98565 0.92116 1.03467 1.21196 0.91524 0.83862 1.02608 1.45835 1.11678 1.04772 1.73518 1.18336 0.87684 0.83306 0.76340 1.90791 1.17519 1.85198 1.51160 1.19819 0.93882 0.92567 1.01693 1.21327 0.90654 1.01512 0.98851 1.20956 1.01713 0.89972 0.93487 1.21237 0.93561 0.97849 1.09338 1.19181 0.88163 0.89795 0.73166 1.90715 1.17306 1.88788 1.43249 1.22864 0.97021 0.99411 1.18196 1.24934 0.89047 0.90889 0.84629 1.83129 1.39892 1.12183 1.77054 1.18990 0.91102 0.82809 0.98036 1.20567 1.00840 0.88686 1.00119 0.93928 0.79223 0.95892 0.95902 0.90577 0.90571 0.91280 0.91271 0.74565 0.81643 0.82874 0.80465 0.72465 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.08 4.01 7.83 -2.92 -0.02 3.99 16 9 N -0.75 -37.14 5.60 -343.45 -1.92 -39.06 16 10 C 0.15 5.69 6.26 86.38 0.54 6.23 16 11 C -0.12 -3.28 5.44 30.60 0.17 -3.11 16 12 C 0.13 3.11 5.67 86.38 0.49 3.60 16 13 N -0.71 -13.63 5.50 -465.80 -2.56 -16.19 16 14 C 0.56 12.37 7.77 86.84 0.68 13.05 16 15 O -0.57 -16.77 16.32 -3.83 -0.06 -16.83 16 16 C -0.08 -1.34 5.87 -20.07 -0.12 -1.46 16 17 C -0.11 -1.46 9.47 22.29 0.21 -1.25 16 18 C -0.04 -0.69 9.60 22.17 0.21 -0.48 16 19 C -0.22 -3.85 5.89 -19.94 -0.12 -3.97 16 20 C 0.41 7.89 7.00 25.71 0.18 8.07 16 21 O -0.51 -13.69 17.39 -4.98 -0.09 -13.77 16 22 C -0.36 -3.71 10.00 22.35 0.22 -3.49 16 23 C 0.17 0.75 11.25 66.99 0.75 1.50 16 24 O -0.22 -2.29 9.73 -2.41 -0.02 -2.31 16 25 C 0.14 2.10 6.77 22.96 0.16 2.25 16 26 C -0.08 -1.40 9.56 22.64 0.22 -1.19 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.38 19.55 7.67 -92.71 -0.71 18.84 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.42 5.64 6.47 -92.70 -0.60 5.04 16 36 H 0.17 1.38 6.36 -2.91 -0.02 1.36 16 37 H 0.15 2.29 7.79 -2.91 -0.02 2.26 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.26 -1.89 8.06 -2.91 -0.02 -1.91 16 40 H 0.16 2.64 7.62 -2.91 -0.02 2.62 16 Total: -1.00 -78.55 351.56 2.34 -76.22 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.21 Total: 19.55 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 4.90 Total: 2.85 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -4.21 Total: -113.51 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.17 Total: -32.92 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -78.55 2.34 -76.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171363861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.804 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds