Wall clock time and date at job start Tue Mar 31 2020 10:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48499 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46821 * 300.00015 * 3 2 1 6 6 H 1.48492 * 109.47338 * 59.99717 * 3 2 1 7 7 C 1.37877 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99866 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00352 * 95.90208 * 10 9 7 12 12 C 1.50701 * 109.47071 * 89.99963 * 11 10 9 13 13 C 1.38667 * 120.41654 * 90.00264 * 12 11 10 14 14 C 1.38630 * 118.41824 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16202 * 0.25619 * 14 13 12 16 16 N 1.31857 * 120.76498 * 359.49796 * 15 14 13 17 17 C 1.31888 * 121.72216 * 0.48796 * 16 15 14 18 18 C 1.34779 * 119.99893 * 275.90453 * 10 9 7 19 19 O 1.21488 * 120.00008 * 185.32374 * 18 10 9 20 20 C 1.48414 * 119.99961 * 5.31464 * 18 10 9 21 21 N 1.32495 * 119.15089 * 6.05292 * 20 18 10 22 22 C 1.32047 * 120.79687 * 179.75640 * 21 20 18 23 23 C 1.39093 * 119.12786 * 0.50297 * 22 21 20 24 24 F 1.35102 * 120.77607 * 179.72906 * 23 22 21 25 25 C 1.39102 * 118.44826 * 359.74642 * 23 22 21 26 26 N 1.32039 * 119.12867 * 0.02562 * 25 23 22 27 27 H 0.96999 * 119.99887 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47766 * 59.99787 * 9 7 2 29 29 H 1.08999 * 109.47033 * 299.99314 * 9 7 2 30 30 H 1.09000 * 109.46829 * 329.99976 * 11 10 9 31 31 H 1.08998 * 109.47414 * 210.00605 * 11 10 9 32 32 H 1.07998 * 120.79294 * 359.95694 * 13 12 11 33 33 H 1.07999 * 120.41846 * 179.97438 * 14 13 12 34 34 H 1.08003 * 119.62197 * 179.74299 * 15 14 13 35 35 H 1.08000 * 119.61260 * 179.75597 * 17 16 15 36 36 H 1.08003 * 120.43157 * 180.22989 * 22 21 20 37 37 H 1.08000 * 120.43290 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.5790 -4.2537 1.2643 12 6 1.6338 -5.3919 1.5507 13 6 1.9136 -6.6696 1.0902 14 6 1.0158 -7.6860 1.3780 15 6 -0.1230 -7.3930 2.1045 16 7 -0.3545 -6.1667 2.5304 17 6 0.4776 -5.1756 2.2758 18 6 2.7331 -4.0473 -1.1587 19 8 3.4464 -5.0307 -1.1700 20 6 2.4453 -3.3248 -2.4227 21 7 1.7665 -2.1879 -2.3760 22 6 1.4964 -1.5159 -3.4802 23 6 1.9254 -2.0219 -4.7027 24 9 1.6627 -1.3646 -5.8534 25 6 2.6310 -3.2206 -4.7129 26 7 2.8689 -3.8362 -3.5692 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.5247 -3.5242 2.0724 31 1 3.5966 -4.6367 1.1885 32 1 2.8095 -6.8683 0.5208 33 1 1.2015 -8.6930 1.0349 34 1 -0.8296 -8.1783 2.3293 35 1 0.2524 -4.1834 2.6381 36 1 0.9458 -0.5879 -3.4349 37 1 2.9788 -3.6428 -5.6441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197199721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:52 Heat of formation + Delta-G solvation = 37.695224 kcal Electronic energy + Delta-G solvation = -26043.388961 eV Core-core repulsion = 22122.988747 eV Total energy + Delta-G solvation = -3920.400213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.98143 -40.89159 -39.98884 -38.57993 -35.51031 -33.65180 -32.96612 -32.17548 -31.62209 -30.91814 -27.57787 -26.50339 -24.64000 -24.34060 -23.43335 -22.80151 -21.96129 -19.75385 -18.09656 -17.44924 -17.12053 -16.95581 -16.50290 -16.02959 -15.91712 -15.61836 -15.16359 -14.97948 -14.48584 -14.29464 -14.17865 -13.65344 -13.49727 -13.11675 -12.95759 -12.86303 -12.69825 -12.36773 -12.06577 -11.84678 -11.33073 -11.11906 -11.01439 -10.78508 -10.48647 -10.19636 -9.84211 -9.64646 -9.45578 -9.24346 -9.14793 -8.82284 -8.63025 -8.39947 -7.90453 -6.13851 -4.10989 0.60144 1.22605 1.27737 1.51652 3.03031 3.18995 3.29192 3.29272 3.34709 3.92330 4.04778 4.13972 4.30334 4.35651 4.59970 4.65931 4.79164 4.89258 5.01944 5.12035 5.22168 5.23597 5.29315 5.43633 5.60858 5.77577 5.85128 6.01680 6.07101 6.34698 6.45828 6.53275 6.61115 6.91962 7.06572 7.32756 7.46270 7.77015 8.00884 8.12293 8.17595 8.21023 8.68780 8.86870 9.46081 10.93934 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.005512 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.712162 B = 5078.687912 C = 6805.792803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.488 4.488 8 H 0.054 0.946 9 C 0.238 3.762 10 N -0.570 5.570 11 C 0.162 3.838 12 C -0.149 4.149 13 C -0.053 4.053 14 C -0.182 4.182 15 C 0.091 3.909 16 N -0.490 5.490 17 C 0.117 3.883 18 C 0.585 3.415 19 O -0.539 6.539 20 C 0.260 3.740 21 N -0.375 5.375 22 C 0.115 3.885 23 C 0.001 3.999 24 F -0.124 7.124 25 C 0.101 3.899 26 N -0.451 5.451 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -7.622 -3.034 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.119 3.881 10 N -0.300 5.300 11 C 0.039 3.961 12 C -0.152 4.152 13 C -0.080 4.080 14 C -0.202 4.202 15 C -0.066 4.066 16 N -0.198 5.198 17 C -0.040 4.040 18 C 0.369 3.631 19 O -0.416 6.416 20 C -0.008 4.008 21 N -0.090 5.090 22 C -0.053 4.053 23 C -0.023 4.023 24 F -0.103 7.103 25 C -0.068 4.068 26 N -0.165 5.165 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.197 0.803 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.300 -8.323 -1.686 8.591 hybrid contribution 0.897 1.660 -1.773 2.589 sum 2.197 -6.663 -3.459 7.823 Atomic orbital electron populations 1.69929 1.05708 1.26671 1.50265 1.24755 0.94655 0.98426 0.95558 0.86681 0.80205 0.84215 0.77780 1.19996 1.21027 1.20941 1.21243 0.92928 0.90174 1.48449 0.92757 1.19918 0.87317 0.81878 0.98991 1.48205 1.43887 1.34064 1.03794 1.20248 0.96629 0.92288 0.86954 1.21379 0.98356 0.96059 0.99431 1.21696 0.99190 0.92032 0.95072 1.22111 0.96355 1.00364 1.01351 1.22708 0.95539 0.94043 0.94319 1.67714 1.31060 1.00468 1.20605 1.22815 0.89207 0.98119 0.93903 1.17130 0.80826 0.83072 0.82097 1.90686 1.39150 1.25840 1.85909 1.23048 0.94214 0.90528 0.93059 1.69854 1.07852 1.04074 1.27225 1.23845 0.95630 1.00253 0.85583 1.20041 1.02729 0.95281 0.84287 1.91519 1.92013 1.79955 1.46800 1.23291 0.95032 0.90725 0.97773 1.68180 1.17757 1.32879 0.97671 0.92856 0.91918 0.94934 0.88449 0.89561 0.84268 0.85215 0.83280 0.82414 0.80268 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.75 13.29 55.43 0.74 -22.01 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.88 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.49 -11.73 7.32 -34.44 -0.25 -11.98 16 8 H 0.05 1.36 7.81 -52.49 -0.41 0.95 16 9 C 0.24 5.29 4.75 -5.19 -0.02 5.27 16 10 N -0.57 -11.36 2.46 -177.33 -0.44 -11.79 16 11 C 0.16 2.72 5.49 -5.19 -0.03 2.69 16 12 C -0.15 -2.37 5.48 -104.48 -0.57 -2.94 16 13 C -0.05 -0.80 9.73 -39.28 -0.38 -1.18 16 14 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 15 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 16 N -0.49 -7.85 10.36 -13.25 -0.14 -7.99 16 17 C 0.12 1.87 10.86 -17.55 -0.19 1.68 16 18 C 0.58 12.22 7.64 -12.07 -0.09 12.12 16 19 O -0.54 -11.62 15.79 5.38 0.08 -11.53 16 20 C 0.26 5.25 7.41 -157.07 -1.16 4.08 16 21 N -0.38 -7.59 4.72 -11.08 -0.05 -7.65 16 22 C 0.11 1.98 11.30 -17.14 -0.19 1.78 16 23 C 0.00 0.02 7.40 -38.94 -0.29 -0.27 16 24 F -0.12 -1.68 17.30 2.25 0.04 -1.64 16 25 C 0.10 1.47 11.30 -17.14 -0.19 1.28 16 26 N -0.45 -8.28 10.13 -11.08 -0.11 -8.39 16 27 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.06 1.51 5.79 -51.93 -0.30 1.21 16 29 H 0.03 0.75 8.03 -51.93 -0.42 0.34 16 30 H 0.10 1.52 8.02 -51.93 -0.42 1.11 16 31 H 0.09 1.39 7.45 -51.93 -0.39 1.01 16 32 H 0.14 2.09 7.47 -52.49 -0.39 1.70 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.18 2.89 8.06 -52.48 -0.42 2.46 16 37 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -28.74 333.52 -7.52 -36.26 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.57 Total: 2.77 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -4.08 Total: 12.38 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.00 Total: -57.83 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.74 -7.52 -36.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197199721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.959 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds