Wall clock time and date at job start Tue Mar 31 2020 10:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48499 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46821 * 300.00015 * 3 2 1 6 6 H 1.48492 * 109.47338 * 59.99717 * 3 2 1 7 7 C 1.37877 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99866 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00352 * 95.90208 * 10 9 7 12 12 C 1.50701 * 109.47071 * 89.99963 * 11 10 9 13 13 C 1.38667 * 120.41654 * 90.00264 * 12 11 10 14 14 C 1.38630 * 118.41824 * 179.97438 * 13 12 11 15 15 C 1.38221 * 119.16202 * 0.25619 * 14 13 12 16 16 N 1.31857 * 120.76498 * 359.49796 * 15 14 13 17 17 C 1.31888 * 121.72216 * 0.48796 * 16 15 14 18 18 C 1.34779 * 119.99893 * 275.90453 * 10 9 7 19 19 O 1.21488 * 120.00008 * 185.32374 * 18 10 9 20 20 C 1.48414 * 119.99961 * 5.31464 * 18 10 9 21 21 N 1.32495 * 119.15089 * 6.05292 * 20 18 10 22 22 C 1.32047 * 120.79687 * 179.75640 * 21 20 18 23 23 C 1.39093 * 119.12786 * 0.50297 * 22 21 20 24 24 F 1.35102 * 120.77607 * 179.72906 * 23 22 21 25 25 C 1.39102 * 118.44826 * 359.74642 * 23 22 21 26 26 N 1.32039 * 119.12867 * 0.02562 * 25 23 22 27 27 H 0.96999 * 119.99887 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47766 * 59.99787 * 9 7 2 29 29 H 1.08999 * 109.47033 * 299.99314 * 9 7 2 30 30 H 1.09000 * 109.46829 * 329.99976 * 11 10 9 31 31 H 1.08998 * 109.47414 * 210.00605 * 11 10 9 32 32 H 1.07998 * 120.79294 * 359.95694 * 13 12 11 33 33 H 1.07999 * 120.41846 * 179.97438 * 14 13 12 34 34 H 1.08003 * 119.62197 * 179.74299 * 15 14 13 35 35 H 1.08000 * 119.61260 * 179.75597 * 17 16 15 36 36 H 1.08003 * 120.43157 * 180.22989 * 22 21 20 37 37 H 1.08000 * 120.43290 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.5790 -4.2537 1.2643 12 6 1.6338 -5.3919 1.5507 13 6 1.9136 -6.6696 1.0902 14 6 1.0158 -7.6860 1.3780 15 6 -0.1230 -7.3930 2.1045 16 7 -0.3545 -6.1667 2.5304 17 6 0.4776 -5.1756 2.2758 18 6 2.7331 -4.0473 -1.1587 19 8 3.4464 -5.0307 -1.1700 20 6 2.4453 -3.3248 -2.4227 21 7 1.7665 -2.1879 -2.3760 22 6 1.4964 -1.5159 -3.4802 23 6 1.9254 -2.0219 -4.7027 24 9 1.6627 -1.3646 -5.8534 25 6 2.6310 -3.2206 -4.7129 26 7 2.8689 -3.8362 -3.5692 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.5247 -3.5242 2.0724 31 1 3.5966 -4.6367 1.1885 32 1 2.8095 -6.8683 0.5208 33 1 1.2015 -8.6930 1.0349 34 1 -0.8296 -8.1783 2.3293 35 1 0.2524 -4.1834 2.6381 36 1 0.9458 -0.5879 -3.4349 37 1 2.9788 -3.6428 -5.6441 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197199721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:51 Heat of formation + Delta-G solvation = 22.091763 kcal Electronic energy + Delta-G solvation = -26044.065578 eV Core-core repulsion = 22122.988747 eV Total energy + Delta-G solvation = -3921.076830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.17810 -42.30703 -41.19943 -40.05859 -37.09630 -35.03716 -34.61368 -33.63774 -32.85545 -32.20383 -29.27152 -27.93057 -25.99920 -25.74612 -24.87100 -24.27496 -23.19605 -21.19737 -19.47292 -18.70686 -18.68470 -18.43853 -17.90313 -17.33785 -17.19638 -16.99458 -16.59270 -16.51088 -15.97097 -15.74390 -15.40701 -14.92097 -14.82149 -14.42397 -14.39938 -14.21064 -14.11956 -13.87403 -13.65464 -13.20815 -12.83203 -12.76098 -12.58815 -12.33630 -12.08941 -11.87078 -11.62837 -11.16921 -10.72358 -10.49236 -10.44037 -10.37678 -10.03075 -9.89876 -9.52414 -8.02627 -6.05145 -0.77668 -0.06279 0.12780 0.35515 1.41214 1.47248 1.52189 1.56222 1.88057 2.48299 2.63064 2.68531 2.86519 2.99221 3.18585 3.32385 3.56056 3.57736 3.63635 3.85628 3.89231 4.03814 4.12250 4.12585 4.47340 4.54849 4.67438 4.74604 4.87392 4.93983 5.15618 5.22171 5.38132 5.47535 5.71307 5.78877 5.79950 5.88506 6.26100 6.38197 6.74860 6.96140 7.03003 7.15098 7.55724 9.05105 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.005512 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.712162 B = 5078.687912 C = 6805.792803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.037 3.963 3 Si 0.932 3.068 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.486 4.486 8 H 0.040 0.960 9 C 0.257 3.743 10 N -0.570 5.570 11 C 0.162 3.838 12 C -0.158 4.158 13 C -0.063 4.063 14 C -0.171 4.171 15 C 0.090 3.910 16 N -0.512 5.512 17 C 0.104 3.896 18 C 0.578 3.422 19 O -0.553 6.553 20 C 0.239 3.761 21 N -0.405 5.405 22 C 0.101 3.899 23 C 0.027 3.973 24 F -0.109 7.109 25 C 0.116 3.884 26 N -0.466 5.466 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.153 0.847 36 H 0.185 0.815 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -8.612 -4.511 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.163 4.163 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.137 3.863 10 N -0.300 5.300 11 C 0.039 3.961 12 C -0.162 4.162 13 C -0.090 4.090 14 C -0.191 4.191 15 C -0.067 4.067 16 N -0.221 5.221 17 C -0.053 4.053 18 C 0.362 3.638 19 O -0.431 6.431 20 C -0.029 4.029 21 N -0.120 5.120 22 C -0.066 4.066 23 C 0.002 3.998 24 F -0.088 7.088 25 C -0.052 4.052 26 N -0.181 5.181 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.183 0.817 34 H 0.202 0.798 35 H 0.170 0.830 36 H 0.202 0.798 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.564 -9.301 -3.150 9.943 hybrid contribution 0.814 1.880 -1.467 2.519 sum 2.378 -7.421 -4.617 9.058 Atomic orbital electron populations 1.70007 1.06621 1.27090 1.51723 1.25194 0.95100 1.00471 0.95509 0.85926 0.78810 0.81607 0.77711 1.20560 1.20468 1.21055 1.21220 0.92090 0.91055 1.48169 0.94217 1.19498 0.87207 0.82086 0.97471 1.48180 1.43359 1.33620 1.04801 1.20352 0.97130 0.92786 0.85831 1.21238 0.98316 0.96231 1.00373 1.21804 0.99730 0.92211 0.95223 1.22465 0.95218 1.01395 0.99986 1.23337 0.96232 0.93839 0.93265 1.67727 1.31373 1.01476 1.21497 1.22771 0.89591 0.98330 0.94610 1.17377 0.80653 0.83088 0.82637 1.90653 1.39784 1.26376 1.86248 1.22888 0.95495 0.91038 0.93460 1.69694 1.08613 1.04676 1.29055 1.23976 0.96086 1.00439 0.86099 1.19837 1.01267 0.94904 0.83780 1.91567 1.91690 1.79674 1.45842 1.24030 0.93167 0.89894 0.98146 1.68217 1.18245 1.33478 0.98120 0.92916 0.93418 0.96373 0.88043 0.89171 0.84548 0.81714 0.79772 0.82969 0.79801 0.75917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.63 13.29 21.45 0.28 -47.35 16 2 C 0.04 1.83 5.46 84.65 0.46 2.29 16 3 Si 0.93 40.44 29.54 68.60 2.03 42.46 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.49 -23.88 7.32 25.60 0.19 -23.70 16 8 H 0.04 2.04 7.81 -2.91 -0.02 2.02 16 9 C 0.26 11.86 4.75 85.63 0.41 12.26 16 10 N -0.57 -23.41 2.46 -833.26 -2.05 -25.46 16 11 C 0.16 5.58 5.49 85.63 0.47 6.05 16 12 C -0.16 -5.12 5.48 -19.78 -0.11 -5.23 16 13 C -0.06 -1.85 9.73 22.47 0.22 -1.63 16 14 C -0.17 -4.07 10.11 22.36 0.23 -3.84 16 15 C 0.09 2.25 11.18 84.68 0.95 3.20 16 16 N -0.51 -16.12 10.36 -195.84 -2.03 -18.15 16 17 C 0.10 3.40 10.86 84.67 0.92 4.32 16 18 C 0.58 24.53 7.64 86.95 0.66 25.19 16 19 O -0.55 -23.99 15.79 -3.68 -0.06 -24.05 16 20 C 0.24 9.67 7.41 137.63 1.02 10.70 16 21 N -0.41 -16.52 4.72 -188.97 -0.89 -17.41 16 22 C 0.10 3.42 11.30 84.87 0.96 4.38 16 23 C 0.03 0.73 7.40 22.68 0.17 0.90 16 24 F -0.11 -2.60 17.30 44.97 0.78 -1.82 16 25 C 0.12 3.05 11.30 84.87 0.96 4.01 16 26 N -0.47 -16.48 10.13 -188.97 -1.91 -18.39 16 27 H 0.26 13.09 8.31 -92.71 -0.77 12.32 16 28 H 0.05 2.38 5.79 -2.39 -0.01 2.37 16 29 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 30 H 0.10 3.33 8.02 -2.39 -0.02 3.31 16 31 H 0.09 3.00 7.45 -2.39 -0.02 2.98 16 32 H 0.14 4.05 7.47 -2.91 -0.02 4.02 16 33 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.19 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.19 5.86 8.06 -2.91 -0.02 5.84 16 37 H 0.22 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -62.22 333.52 4.77 -57.45 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.12 Total: 13.82 kcal Atomic # 6 Polarization: 31.40 SS G_CDS: 7.50 Total: 38.90 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.60 Total: -126.76 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -62.22 4.77 -57.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197199721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.544 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds