Wall clock time and date at job start Tue Mar 31 2020 10:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47085 * 299.99844 * 3 2 1 6 6 H 1.48498 * 109.47321 * 59.99973 * 3 2 1 7 7 C 1.38812 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 135.02506 * 7 2 1 9 9 N 1.36939 * 120.00282 * 315.02176 * 7 2 1 10 10 C 1.46495 * 119.99967 * 152.89619 * 9 7 2 11 11 C 1.50706 * 109.46908 * 269.99770 * 10 9 7 12 12 C 1.38230 * 119.99538 * 90.00518 * 11 10 9 13 13 C 1.38243 * 119.99891 * 179.97438 * 12 11 10 14 14 C 1.38235 * 119.99569 * 0.09013 * 13 12 11 15 15 C 1.38234 * 120.00334 * 359.86480 * 14 13 12 16 16 C 1.38232 * 119.99928 * 0.09014 * 15 14 13 17 17 C 1.46500 * 119.99532 * 332.89505 * 9 7 2 18 18 C 1.50699 * 109.47336 * 262.42097 * 17 9 7 19 19 C 1.38291 * 119.92926 * 253.19697 * 18 17 9 20 20 C 1.38086 * 120.08522 * 179.76344 * 19 18 17 21 21 C 1.38948 * 119.95147 * 0.50925 * 20 19 18 22 22 N 1.39669 * 120.06912 * 179.72026 * 21 20 19 23 23 C 1.38863 * 119.86103 * 359.74805 * 21 20 19 24 24 C 1.38241 * 119.91636 * 359.97438 * 23 21 20 25 25 Cl 1.73604 * 119.97711 * 179.97438 * 24 23 21 26 26 H 0.96999 * 119.99926 * 3.60124 * 1 2 3 27 27 H 1.09006 * 109.47050 * 150.00639 * 10 9 7 28 28 H 1.08991 * 109.47510 * 29.99813 * 10 9 7 29 29 H 1.08003 * 120.00504 * 359.69705 * 12 11 10 30 30 H 1.08005 * 119.99958 * 179.97438 * 13 12 11 31 31 H 1.08008 * 119.99572 * 179.97438 * 14 13 12 32 32 H 1.07993 * 119.99578 * 180.02562 * 15 14 13 33 33 H 1.07995 * 120.00334 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47319 * 22.42277 * 17 9 7 35 35 H 1.09003 * 109.47077 * 142.42092 * 17 9 7 36 36 H 1.07997 * 119.95692 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.02874 * 180.23248 * 20 19 18 38 38 H 0.96996 * 120.00226 * 180.02562 * 22 21 20 39 39 H 0.97009 * 120.00095 * 0.02567 * 22 21 20 40 40 H 1.08002 * 120.04024 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.8533 -1.3393 -0.6605 9 7 1.6261 -2.2142 0.8392 10 6 1.9018 -3.6075 0.4802 11 6 0.7434 -4.1615 -0.3088 12 6 0.7301 -4.0513 -1.6866 13 6 -0.3322 -4.5600 -2.4104 14 6 -1.3819 -5.1771 -1.7561 15 6 -1.3681 -5.2881 -0.3783 16 6 -0.3054 -4.7803 0.3454 17 6 0.9395 -1.9035 2.0955 18 6 1.9359 -1.9042 3.2261 19 6 1.9448 -2.9444 4.1373 20 6 2.8596 -2.9508 5.1717 21 6 3.7654 -1.9054 5.3031 22 7 4.6879 -1.9064 6.3518 23 6 3.7511 -0.8593 4.3900 24 6 2.8366 -0.8614 3.3533 25 17 2.8169 0.4459 2.2113 26 1 -0.4850 0.8384 -0.0528 27 1 2.0382 -4.1963 1.3873 28 1 2.8081 -3.6547 -0.1234 29 1 1.5474 -3.5639 -2.1974 30 1 -0.3428 -4.4736 -3.4870 31 1 -2.2120 -5.5742 -2.3216 32 1 -2.1880 -5.7706 0.1327 33 1 -0.2947 -4.8666 1.4218 34 1 0.4743 -0.9206 2.0219 35 1 0.1732 -2.6549 2.2862 36 1 1.2382 -3.7550 4.0374 37 1 2.8682 -3.7655 5.8806 38 1 5.3195 -1.1759 6.4429 39 1 4.6970 -2.6377 6.9891 40 1 4.4541 -0.0454 4.4892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233376757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:44 Heat of formation + Delta-G solvation = 79.234922 kcal Electronic energy + Delta-G solvation = -24081.736885 eV Core-core repulsion = 20695.014687 eV Total energy + Delta-G solvation = -3386.722198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.02981 -38.42337 -36.06339 -35.39064 -33.88550 -31.96146 -30.45444 -30.17439 -30.12683 -28.68921 -25.55945 -24.94558 -22.37981 -22.14123 -21.79770 -20.70976 -19.78166 -17.28462 -16.67448 -16.53378 -16.06970 -15.18382 -14.68518 -14.39945 -14.37332 -14.34158 -13.83017 -13.68238 -13.23762 -13.05541 -12.79717 -12.69440 -12.47301 -11.95821 -11.79204 -11.56565 -11.31454 -11.25953 -10.70801 -10.65486 -10.42102 -10.33022 -10.12146 -9.97029 -9.79180 -9.51473 -9.34870 -8.23568 -8.16252 -8.04405 -7.95147 -7.05848 -6.83053 -5.93788 -3.03024 1.83012 2.02873 2.15205 2.18354 2.46218 3.33834 3.44414 3.94055 4.17321 4.26695 4.49425 4.62395 5.15887 5.32900 5.45259 5.53962 5.57268 5.69466 5.75017 5.82433 5.88585 5.98404 6.16957 6.19122 6.23410 6.27832 6.39795 6.48782 6.66198 6.68023 6.79434 6.82792 6.95351 7.14468 7.18330 7.23378 7.29621 7.42040 7.53188 7.73868 7.78749 7.90795 7.91571 8.37287 9.10809 9.83341 10.38745 11.07971 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.006020 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.740225 B = 4649.710027 C = 6450.017507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.054 3.946 3 Si 0.775 3.225 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.269 4.269 8 H 0.065 0.935 9 N -0.558 5.558 10 C 0.177 3.823 11 C -0.072 4.072 12 C -0.096 4.096 13 C -0.124 4.124 14 C -0.143 4.143 15 C -0.127 4.127 16 C -0.118 4.118 17 C 0.190 3.810 18 C -0.128 4.128 19 C -0.067 4.067 20 C -0.204 4.204 21 C 0.204 3.796 22 N -0.885 5.885 23 C -0.200 4.200 24 C 0.015 3.985 25 Cl -0.031 7.031 26 H 0.255 0.745 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.394 0.606 39 H 0.394 0.606 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -6.680 7.595 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.148 4.148 3 Si 0.604 3.396 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.396 4.396 8 H 0.083 0.917 9 N -0.275 5.275 10 C 0.052 3.948 11 C -0.076 4.076 12 C -0.115 4.115 13 C -0.142 4.142 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.137 4.137 17 C 0.064 3.936 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.226 4.226 21 C 0.101 3.899 22 N -0.425 5.425 23 C -0.223 4.223 24 C -0.013 4.013 25 Cl -0.003 7.003 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.221 0.779 39 H 0.221 0.779 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.499 -6.448 7.457 10.461 hybrid contribution 0.565 1.213 0.232 1.358 sum 4.064 -5.235 7.690 10.151 Atomic orbital electron populations 1.70419 1.05934 1.25958 1.45852 1.24667 0.93639 0.98094 0.98425 0.87362 0.83502 0.88504 0.80187 1.17888 1.19568 1.18479 1.18709 1.09268 0.91090 1.20541 0.91731 1.43965 1.67847 0.99642 1.16090 1.19999 0.93100 0.86314 0.95436 1.21017 0.98689 0.93590 0.94291 1.20944 0.98388 0.98100 0.94030 1.21014 0.94753 0.99402 0.99071 1.20860 0.98582 1.02133 0.94587 1.20932 0.98152 1.01243 0.94237 1.20892 0.94456 0.99399 0.98908 1.19752 0.90059 1.02079 0.81727 1.20801 1.00580 0.93404 0.98548 1.20718 0.97360 0.97240 0.93403 1.20462 1.00126 0.99581 1.02471 1.17503 0.90110 0.93879 0.88383 1.42317 1.39857 1.28809 1.31521 1.20354 1.03703 1.00460 0.97801 1.21225 0.95629 0.92640 0.91761 1.98286 1.97198 1.47541 1.57263 0.93498 0.93617 0.92857 0.86684 0.87335 0.87507 0.87438 0.87354 0.89029 0.94728 0.86319 0.86931 0.77909 0.77898 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.61 12.55 55.49 0.70 -22.91 16 2 C 0.05 1.45 3.37 -17.43 -0.06 1.39 16 3 Si 0.78 19.10 24.10 -169.99 -4.10 15.00 16 4 H -0.25 -6.19 6.99 56.52 0.39 -5.79 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.24 6.60 56.52 0.37 -5.86 16 7 C -0.27 -6.98 7.95 -15.06 -0.12 -7.10 16 8 H 0.06 1.73 8.06 -52.48 -0.42 1.31 16 9 N -0.56 -13.02 2.48 -175.98 -0.44 -13.45 16 10 C 0.18 3.62 5.80 -5.19 -0.03 3.59 16 11 C -0.07 -1.45 5.46 -104.62 -0.57 -2.02 16 12 C -0.10 -1.89 9.70 -39.58 -0.38 -2.27 16 13 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 14 C -0.14 -2.40 10.05 -39.58 -0.40 -2.79 16 15 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 16 C -0.12 -2.16 9.70 -39.58 -0.38 -2.55 16 17 C 0.19 4.27 5.09 -5.19 -0.03 4.24 16 18 C -0.13 -2.56 5.44 -104.55 -0.57 -3.12 16 19 C -0.07 -1.13 9.66 -39.62 -0.38 -1.51 16 20 C -0.20 -3.03 9.90 -39.37 -0.39 -3.42 16 21 C 0.20 3.05 6.75 -83.79 -0.57 2.49 16 22 N -0.88 -9.53 9.09 32.41 0.29 -9.24 16 23 C -0.20 -3.44 9.68 -39.35 -0.38 -3.82 16 24 C 0.01 0.29 6.31 -39.53 -0.25 0.04 16 25 Cl -0.03 -0.70 17.03 -51.86 -0.88 -1.58 16 26 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 27 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 28 H 0.05 1.08 7.98 -51.93 -0.41 0.67 16 29 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 30 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.09 2.34 5.38 -51.93 -0.28 2.06 16 35 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 36 H 0.12 1.76 7.99 -52.49 -0.42 1.34 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.39 3.61 8.84 -40.82 -0.36 3.25 16 39 H 0.39 3.34 8.84 -40.82 -0.36 2.98 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -29.20 338.64 -9.84 -39.04 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.22 Total: 10.08 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -5.31 Total: -22.03 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.55 Total: -45.61 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.10 Total: 15.00 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.88 Total: -1.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.20 -9.84 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233376757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.273 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds