Wall clock time and date at job start Tue Mar 31 2020 11:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.52997 * 109.46833 * 119.99611 * 2 1 3 5 5 H 1.08998 * 109.47329 * 53.90657 * 4 2 1 6 6 O 1.42903 * 109.47057 * 293.90799 * 4 2 1 7 7 C 1.35667 * 116.99836 * 154.69650 * 6 4 2 8 8 C 1.39163 * 119.90311 * 355.08260 * 7 6 4 9 9 C 1.37604 * 120.09179 * 179.97438 * 8 7 6 10 10 C 1.39952 * 119.90124 * 0.27510 * 9 8 7 11 11 C 1.47571 * 120.08983 * 179.70247 * 10 9 8 12 12 O 1.21824 * 120.00060 * 359.97438 * 11 10 9 13 13 C 1.41757 * 120.00175 * 180.02562 * 11 10 9 14 14 H 1.08000 * 119.99842 * 6.06452 * 13 11 10 15 15 C 1.40339 * 120.00055 * 186.06590 * 13 11 10 16 16 N 1.30524 * 120.00399 * 5.81870 * 15 13 11 17 17 Si 1.86802 * 119.99804 * 185.81878 * 15 13 11 18 18 H 1.48504 * 109.47052 * 84.99750 * 17 15 13 19 19 H 1.48500 * 109.47356 * 204.99549 * 17 15 13 20 20 H 1.48500 * 109.47369 * 324.99672 * 17 15 13 21 21 C 1.39947 * 119.81385 * 359.44836 * 10 9 8 22 22 C 1.37593 * 119.90425 * 0.52977 * 21 10 9 23 23 C 1.52999 * 109.47135 * 173.91157 * 4 2 1 24 24 F 1.39899 * 109.47291 * 184.10038 * 23 4 2 25 25 F 1.39901 * 109.46938 * 304.09981 * 23 4 2 26 26 F 1.39893 * 109.47064 * 64.10034 * 23 4 2 27 27 H 1.08999 * 109.47685 * 305.06913 * 1 2 3 28 28 H 1.09002 * 109.47156 * 65.06750 * 1 2 3 29 29 H 1.09003 * 109.47493 * 185.06404 * 1 2 3 30 30 H 1.08992 * 109.46939 * 239.99766 * 2 1 3 31 31 H 1.08999 * 109.46585 * 188.81046 * 3 2 1 32 32 H 1.09000 * 109.46910 * 308.80564 * 3 2 1 33 33 H 1.08994 * 109.47641 * 68.80355 * 3 2 1 34 34 H 1.07998 * 119.95459 * 359.97438 * 8 7 6 35 35 H 1.07999 * 120.04565 * 179.97438 * 9 8 7 36 36 H 0.96996 * 120.00756 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.04503 * 180.25386 * 21 10 9 38 38 H 1.08005 * 119.95338 * 179.74977 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5903 -1.7125 1.3056 6 8 1.6839 0.0301 2.4116 7 6 1.5677 -0.6557 3.5764 8 6 1.6918 -2.0418 3.5808 9 6 1.5752 -2.7411 4.7601 10 6 1.3256 -2.0570 5.9553 11 6 1.1933 -2.8035 7.2213 12 8 1.3007 -4.0169 7.2271 13 6 0.9400 -2.1086 8.4307 14 1 0.7467 -1.0462 8.4128 15 6 0.9405 -2.8013 9.6513 16 7 1.2851 -4.0597 9.6875 17 14 0.4479 -1.9222 11.2242 18 1 -1.0297 -1.9563 11.3684 19 1 1.0745 -2.6002 12.3873 20 1 0.9073 -0.5111 11.1674 21 6 1.2073 -0.6625 5.9471 22 6 1.3258 0.0290 4.7635 23 6 3.5623 -0.8551 1.1752 24 9 4.0191 -1.5958 2.2706 25 9 3.9157 -1.5089 -0.0100 26 9 4.1439 0.4170 1.1973 27 1 -0.3634 0.5904 0.8411 28 1 -0.3633 0.4332 -0.9319 29 1 -0.3634 -1.0237 0.0907 30 1 1.8933 -0.5138 -0.8899 31 1 3.1185 1.4465 -0.1574 32 1 1.5539 1.9997 -0.8008 33 1 1.8108 1.9090 0.9581 34 1 1.8800 -2.5693 2.6574 35 1 1.6712 -3.8169 4.7626 36 1 1.2851 -4.5386 10.5310 37 1 1.0188 -0.1304 6.8679 38 1 1.2306 1.1048 4.7557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233519916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:11 Heat of formation + Delta-G solvation = -211.409827 kcal Electronic energy + Delta-G solvation = -26905.217348 eV Core-core repulsion = 22491.033192 eV Total energy + Delta-G solvation = -4414.184157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.26182 -47.76296 -47.69914 -40.19236 -37.98458 -36.21294 -35.07275 -32.73695 -30.73267 -29.93166 -28.89172 -27.45594 -26.68292 -24.12986 -22.72948 -22.29072 -20.44655 -19.71423 -19.05282 -18.49430 -18.36800 -17.38116 -16.60295 -15.69380 -15.62219 -14.92851 -14.78393 -14.70031 -14.42441 -14.31867 -14.15546 -14.08939 -13.83117 -13.73764 -13.61524 -13.25629 -13.18088 -12.91968 -12.54652 -12.46671 -12.29092 -11.80779 -11.79921 -11.40759 -11.27067 -11.22725 -11.16886 -11.03628 -10.60997 -10.49678 -10.38457 -10.01827 -9.00978 -8.50983 -7.62986 -7.52112 -6.37727 -4.93975 1.68027 1.92030 2.48880 2.84619 3.03478 3.11035 3.13534 3.52257 3.68840 3.96707 3.97711 4.04509 4.37789 4.50521 4.59385 4.68800 4.89983 5.14223 5.23604 5.27355 5.41705 5.55443 5.60349 5.70150 5.75271 5.77387 5.92965 5.97960 6.04972 6.09776 6.19120 6.52756 6.72282 6.95460 7.11342 7.20787 7.29294 7.63895 7.99011 8.74995 8.78980 10.26472 10.47794 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.003203 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.736764 B = 8739.151874 C = 9068.031003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.160 4.160 4 C 0.048 3.952 5 H 0.118 0.882 6 O -0.282 6.282 7 C 0.090 3.910 8 C -0.207 4.207 9 C -0.055 4.055 10 C -0.127 4.127 11 C 0.389 3.611 12 O -0.545 6.545 13 C -0.518 4.518 14 H 0.075 0.925 15 C 0.081 3.919 16 N -0.736 5.736 17 Si 0.907 3.093 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.059 4.059 22 C -0.151 4.151 23 C 0.427 3.573 24 F -0.172 7.172 25 F -0.182 7.182 26 F -0.172 7.172 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.275 0.725 37 H 0.139 0.861 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 9.498 -17.735 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.217 4.217 4 C -0.011 4.011 5 H 0.135 0.865 6 O -0.196 6.196 7 C 0.047 3.953 8 C -0.226 4.226 9 C -0.073 4.073 10 C -0.128 4.128 11 C 0.285 3.715 12 O -0.435 6.435 13 C -0.549 4.549 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.364 5.364 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.077 4.077 22 C -0.170 4.170 23 C 0.372 3.628 24 F -0.153 7.153 25 F -0.163 7.163 26 F -0.153 7.153 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.452 8.952 -17.701 19.841 hybrid contribution 0.216 0.231 0.653 0.726 sum 0.668 9.184 -17.048 19.376 Atomic orbital electron populations 1.21792 0.92751 1.02665 1.02978 1.21317 0.98187 0.97917 0.93517 1.22066 1.01922 0.94451 1.03308 1.23629 0.87806 1.00698 0.88979 0.86481 1.86156 1.83891 1.35359 1.14210 1.19171 1.00440 0.90662 0.85048 1.21035 1.09736 0.92564 0.99229 1.21172 0.94835 1.00459 0.90869 1.21895 0.98774 0.94279 0.97857 1.18066 0.79491 0.88321 0.85595 1.90501 1.50161 1.15295 1.87514 1.20917 1.45156 0.96646 0.92163 0.90682 1.25997 0.92936 0.94519 1.00833 1.69917 1.30040 1.09005 1.27441 0.86380 0.79626 0.80479 0.80434 1.19242 1.20206 1.18519 1.21417 0.95483 0.94016 0.96807 1.20317 1.07129 0.99730 0.89777 1.21410 0.93224 0.74224 0.73892 1.93286 1.90927 1.77009 1.54074 1.93171 1.93514 1.81658 1.47966 1.93150 1.86714 1.39550 1.95925 0.91277 0.91647 0.92268 0.88526 0.91502 0.92034 0.90894 0.86580 0.85271 0.91356 0.84346 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.04 37.16 0.34 -0.81 16 2 C -0.09 -0.79 2.67 -90.62 -0.24 -1.04 16 3 C -0.16 -1.42 8.29 37.16 0.31 -1.11 16 4 C 0.05 0.55 1.65 -26.73 -0.04 0.50 16 5 H 0.12 1.23 5.77 -51.93 -0.30 0.93 16 6 O -0.28 -3.91 8.26 -18.70 -0.15 -4.06 16 7 C 0.09 1.49 6.28 -38.90 -0.24 1.24 16 8 C -0.21 -3.57 7.55 -39.47 -0.30 -3.87 16 9 C -0.05 -1.15 9.59 -39.17 -0.38 -1.52 16 10 C -0.13 -2.93 5.89 -104.81 -0.62 -3.55 16 11 C 0.39 10.89 6.89 -34.43 -0.24 10.66 16 12 O -0.54 -17.19 14.96 5.08 0.08 -17.11 16 13 C -0.52 -13.98 8.83 -37.45 -0.33 -14.31 16 14 H 0.08 1.82 6.05 -52.49 -0.32 1.50 16 15 C 0.08 2.14 5.49 -17.32 -0.09 2.05 16 16 N -0.74 -20.96 11.79 55.57 0.66 -20.31 16 17 Si 0.91 18.96 29.57 -169.99 -5.03 13.93 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 C -0.06 -1.16 9.43 -39.18 -0.37 -1.53 16 22 C -0.15 -2.57 9.97 -39.48 -0.39 -2.96 16 23 C 0.43 5.37 2.83 37.16 0.11 5.47 16 24 F -0.17 -2.60 14.75 2.25 0.03 -2.57 16 25 F -0.18 -2.08 16.53 2.25 0.04 -2.04 16 26 F -0.17 -2.23 14.17 2.25 0.03 -2.20 16 27 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.71 7.52 -51.93 -0.39 0.32 16 31 H 0.07 0.62 6.02 -51.93 -0.31 0.31 16 32 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 0.74 7.25 -51.93 -0.38 0.36 16 34 H 0.12 1.68 5.32 -52.49 -0.28 1.40 16 35 H 0.13 2.77 7.65 -52.49 -0.40 2.36 16 36 H 0.28 7.03 8.29 -40.82 -0.34 6.69 16 37 H 0.14 2.58 6.21 -52.48 -0.33 2.26 16 38 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -31.80 326.26 -5.87 -37.67 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.94 Total: 2.56 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.50 Total: -10.78 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.66 Total: -20.31 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.08 Total: -21.18 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.10 Total: -6.82 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.80 -5.87 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233519916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.743 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds