Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47324 * 2 1 4 4 H 1.09002 * 110.42878 * 56.07402 * 3 2 1 5 5 O 1.45752 * 110.48487 * 293.54699 * 3 2 1 6 6 C 1.34269 * 108.23388 * 241.31698 * 5 3 2 7 7 C 1.50703 * 123.63150 * 179.97438 * 6 5 3 8 8 C 1.34556 * 112.74433 * 359.97438 * 6 5 3 9 9 O 1.36129 * 125.05980 * 180.02562 * 8 6 5 10 10 C 1.35539 * 117.99801 * 113.61976 * 9 8 6 11 11 C 1.39288 * 119.91331 * 174.52318 * 10 9 8 12 12 C 1.36579 * 120.08478 * 179.97438 * 11 10 9 13 13 C 1.40006 * 119.91562 * 0.02562 * 12 11 10 14 14 C 1.47525 * 120.08722 * 180.02562 * 13 12 11 15 15 O 1.21857 * 119.99942 * 359.97438 * 14 13 12 16 16 C 1.41578 * 119.99896 * 179.97438 * 14 13 12 17 17 H 1.08002 * 120.00364 * 359.97438 * 16 14 13 18 18 C 1.40364 * 120.00139 * 180.02562 * 16 14 13 19 19 N 1.30524 * 119.99412 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00211 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47166 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47012 * 119.99764 * 20 18 16 23 23 H 1.48503 * 109.47285 * 239.99757 * 20 18 16 24 24 C 1.40007 * 119.82849 * 0.27650 * 13 12 11 25 25 C 1.36584 * 119.90933 * 359.43826 * 24 13 12 26 26 C 1.41325 * 109.88372 * 0.26959 * 8 6 5 27 27 O 1.21474 * 127.54609 * 179.70350 * 26 8 6 28 28 H 1.09005 * 109.46879 * 59.99335 * 1 2 3 29 29 H 1.08997 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46918 * 300.00104 * 1 2 3 31 31 H 1.08997 * 109.46918 * 239.99896 * 2 1 3 32 32 H 1.08996 * 109.46909 * 120.00426 * 2 1 3 33 33 H 1.09002 * 109.46991 * 274.96694 * 7 6 5 34 34 H 1.09007 * 109.47157 * 34.96214 * 7 6 5 35 35 H 1.08998 * 109.47721 * 154.96190 * 7 6 5 36 36 H 1.07997 * 119.95597 * 359.96229 * 11 10 9 37 37 H 1.08002 * 120.04215 * 180.02562 * 12 11 10 38 38 H 0.97008 * 119.99772 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.04651 * 179.72823 * 24 13 12 40 40 H 1.07994 * 119.95381 * 180.30466 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6294 1.9912 0.8476 5 8 1.6958 2.1051 -1.2517 6 6 2.8354 2.4663 -1.8630 7 6 2.8810 3.1799 -3.1897 8 6 3.9324 2.1226 -1.1638 9 8 5.2145 2.3677 -1.5501 10 6 5.9463 3.2376 -0.8119 11 6 7.2948 3.4313 -1.1016 12 6 8.0354 4.3075 -0.3604 13 6 7.4374 5.0108 0.6922 14 6 8.2336 5.9585 1.4949 15 8 9.4134 6.1296 1.2425 16 6 7.6269 6.6692 2.5586 17 1 6.5811 6.5179 2.7820 18 6 8.3842 7.5712 3.3220 19 7 9.6477 7.7552 3.0510 20 14 7.5836 8.5094 4.7249 21 1 6.1528 8.1246 4.8248 22 1 8.2741 8.1807 5.9979 23 1 7.6876 9.9683 4.4678 24 6 6.0832 4.8086 0.9843 25 6 5.3478 3.9351 0.2348 26 6 3.5557 1.4644 0.0287 27 8 4.2863 1.0159 0.8893 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8291 2.4494 -3.9971 34 1 2.0354 3.8638 -3.2636 35 1 3.8112 3.7425 -3.2679 36 1 7.7555 2.8880 -1.9133 37 1 9.0809 4.4575 -0.5859 38 1 10.1710 8.3789 3.5784 39 1 5.6195 5.3460 1.7983 40 1 4.3020 3.7822 0.4564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = -94.991941 kcal Electronic energy + Delta-G solvation = -25645.984653 eV Core-core repulsion = 21778.705495 eV Total energy + Delta-G solvation = -3867.279158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24710 -39.77661 -38.31902 -37.67553 -35.80990 -34.43063 -32.69638 -32.22952 -30.75939 -30.12710 -29.41334 -27.01621 -26.49382 -23.25402 -22.91468 -22.10903 -21.21204 -20.79801 -19.57675 -18.25048 -17.30360 -16.68064 -16.51387 -16.14575 -15.71043 -15.35830 -14.87360 -14.46812 -14.33975 -14.19565 -14.11491 -13.80089 -13.53419 -13.28379 -13.20293 -12.93770 -12.83694 -12.73075 -12.58047 -12.45776 -12.22753 -11.68678 -11.55082 -11.42990 -11.28934 -11.24593 -10.79070 -10.64454 -10.34547 -10.00016 -9.70394 -8.99366 -8.80706 -8.48170 -7.48100 -7.45347 -6.31039 -4.91195 0.49838 1.78411 2.04917 2.24948 2.45851 3.03167 3.12271 3.16739 3.18022 3.82542 4.00016 4.03010 4.07409 4.27331 4.40893 4.64556 4.74176 4.84562 4.93394 5.03958 5.06934 5.15082 5.20938 5.34489 5.39276 5.48147 5.55043 5.64116 5.78362 5.81777 5.89568 6.06326 6.14154 6.24491 6.36570 6.63629 6.83125 7.04857 7.08272 7.24206 7.36542 7.46292 7.87570 8.03559 8.78311 8.84441 10.30668 10.53064 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.003186 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.595327 B = 8786.641974 C = 9590.277958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.014 3.986 4 H 0.142 0.858 5 O -0.263 6.263 6 C 0.160 3.840 7 C -0.103 4.103 8 C -0.169 4.169 9 O -0.219 6.219 10 C 0.096 3.904 11 C -0.152 4.152 12 C -0.059 4.059 13 C -0.129 4.129 14 C 0.388 3.612 15 O -0.543 6.543 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.079 3.921 19 N -0.734 5.734 20 Si 0.906 3.094 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.059 4.059 25 C -0.197 4.197 26 C 0.356 3.644 27 O -0.415 6.415 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.274 0.726 39 H 0.131 0.869 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.407 -11.068 -9.197 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.043 4.043 4 H 0.159 0.841 5 O -0.173 6.173 6 C 0.109 3.891 7 C -0.159 4.159 8 C -0.215 4.215 9 O -0.130 6.130 10 C 0.054 3.946 11 C -0.170 4.170 12 C -0.077 4.077 13 C -0.131 4.131 14 C 0.285 3.715 15 O -0.433 6.433 16 C -0.547 4.547 17 H 0.092 0.908 18 C -0.144 4.144 19 N -0.362 5.362 20 Si 0.730 3.270 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.077 4.077 25 C -0.216 4.216 26 C 0.234 3.766 27 O -0.291 6.291 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.476 -11.246 -9.083 23.459 hybrid contribution -0.594 0.424 0.957 1.204 sum -19.071 -10.821 -8.126 23.384 Atomic orbital electron populations 1.21759 0.93801 1.02486 1.02750 1.21641 0.97762 0.91500 1.04518 1.24169 0.96403 0.97046 0.86637 0.84110 1.87186 1.26943 1.69906 1.33261 1.22540 0.84718 0.87085 0.94714 1.20814 1.05608 1.00309 0.89187 1.19529 0.85881 1.14361 1.01724 1.84380 1.19187 1.58938 1.50516 1.19456 0.91365 0.90880 0.92902 1.20019 0.90420 1.03189 1.03393 1.20980 1.00015 0.93322 0.93427 1.21868 0.94721 0.99285 0.97185 1.18009 0.87524 0.81723 0.84274 1.90511 1.17153 1.65570 1.70115 1.20937 0.97878 1.21716 1.14187 0.90820 1.26018 0.94401 0.96164 0.97843 1.69971 1.06935 1.25974 1.33363 0.86326 0.80497 0.79464 0.80716 1.18395 1.19790 1.19798 1.21101 0.93752 0.95288 0.97604 1.20769 0.99557 1.02208 0.99062 1.21650 0.90665 0.78006 0.86298 1.90709 1.60020 1.38965 1.39372 0.91770 0.91839 0.92139 0.90456 0.88795 0.88254 0.89098 0.88037 0.85844 0.84814 0.91526 0.85090 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.83 37.16 0.37 -0.50 16 2 C -0.12 -0.87 5.72 -26.73 -0.15 -1.03 16 3 C 0.01 0.13 3.78 -27.44 -0.10 0.03 16 4 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 5 O -0.26 -2.45 10.57 -14.67 -0.16 -2.60 16 6 C 0.16 1.66 7.13 -35.61 -0.25 1.40 16 7 C -0.10 -0.74 10.28 36.01 0.37 -0.37 16 8 C -0.17 -2.34 4.90 -39.71 -0.19 -2.54 16 9 O -0.22 -3.61 9.73 -3.34 -0.03 -3.64 16 10 C 0.10 1.80 6.65 -38.80 -0.26 1.54 16 11 C -0.15 -2.88 9.94 -39.79 -0.40 -3.28 16 12 C -0.06 -1.30 9.55 -39.52 -0.38 -1.68 16 13 C -0.13 -3.15 5.89 -104.79 -0.62 -3.77 16 14 C 0.39 11.23 6.90 -34.52 -0.24 10.99 16 15 O -0.54 -17.52 14.88 5.05 0.08 -17.45 16 16 C -0.52 -14.39 8.85 -37.51 -0.33 -14.72 16 17 H 0.07 1.87 6.01 -52.49 -0.32 1.55 16 18 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 19 N -0.73 -21.31 11.73 55.57 0.65 -20.65 16 20 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.06 -1.27 9.39 -39.52 -0.37 -1.64 16 25 C -0.20 -3.76 8.77 -39.79 -0.35 -4.11 16 26 C 0.36 4.95 5.73 -32.69 -0.19 4.76 16 27 O -0.42 -7.30 17.96 5.28 0.09 -7.21 16 28 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.13 2.94 7.65 -52.49 -0.40 2.54 16 38 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 39 H 0.13 2.70 6.19 -52.49 -0.32 2.37 16 40 H 0.11 1.83 6.13 -52.49 -0.32 1.51 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -35.61 349.64 -7.01 -42.62 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.70 Total: 2.14 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -3.19 Total: -12.85 kcal Atomic # 7 Polarization: -21.31 SS G_CDS: 0.65 Total: -20.65 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.02 Total: -30.90 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.61 -7.01 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.372 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds