Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47324 * 2 1 4 4 H 1.09002 * 110.42878 * 56.07402 * 3 2 1 5 5 O 1.45752 * 110.48487 * 293.54699 * 3 2 1 6 6 C 1.34269 * 108.23388 * 241.31698 * 5 3 2 7 7 C 1.50703 * 123.63150 * 179.97438 * 6 5 3 8 8 C 1.34556 * 112.74433 * 359.97438 * 6 5 3 9 9 O 1.36129 * 125.05980 * 180.02562 * 8 6 5 10 10 C 1.35539 * 117.99801 * 113.61976 * 9 8 6 11 11 C 1.39288 * 119.91331 * 174.52318 * 10 9 8 12 12 C 1.36579 * 120.08478 * 179.97438 * 11 10 9 13 13 C 1.40006 * 119.91562 * 0.02562 * 12 11 10 14 14 C 1.47525 * 120.08722 * 180.02562 * 13 12 11 15 15 O 1.21857 * 119.99942 * 359.97438 * 14 13 12 16 16 C 1.41578 * 119.99896 * 179.97438 * 14 13 12 17 17 H 1.08002 * 120.00364 * 359.97438 * 16 14 13 18 18 C 1.40364 * 120.00139 * 180.02562 * 16 14 13 19 19 N 1.30524 * 119.99412 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 120.00211 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47166 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47012 * 119.99764 * 20 18 16 23 23 H 1.48503 * 109.47285 * 239.99757 * 20 18 16 24 24 C 1.40007 * 119.82849 * 0.27650 * 13 12 11 25 25 C 1.36584 * 119.90933 * 359.43826 * 24 13 12 26 26 C 1.41325 * 109.88372 * 0.26959 * 8 6 5 27 27 O 1.21474 * 127.54609 * 179.70350 * 26 8 6 28 28 H 1.09005 * 109.46879 * 59.99335 * 1 2 3 29 29 H 1.08997 * 109.47459 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46918 * 300.00104 * 1 2 3 31 31 H 1.08997 * 109.46918 * 239.99896 * 2 1 3 32 32 H 1.08996 * 109.46909 * 120.00426 * 2 1 3 33 33 H 1.09002 * 109.46991 * 274.96694 * 7 6 5 34 34 H 1.09007 * 109.47157 * 34.96214 * 7 6 5 35 35 H 1.08998 * 109.47721 * 154.96190 * 7 6 5 36 36 H 1.07997 * 119.95597 * 359.96229 * 11 10 9 37 37 H 1.08002 * 120.04215 * 180.02562 * 12 11 10 38 38 H 0.97008 * 119.99772 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.04651 * 179.72823 * 24 13 12 40 40 H 1.07994 * 119.95381 * 180.30466 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6294 1.9912 0.8476 5 8 1.6958 2.1051 -1.2517 6 6 2.8354 2.4663 -1.8630 7 6 2.8810 3.1799 -3.1897 8 6 3.9324 2.1226 -1.1638 9 8 5.2145 2.3677 -1.5501 10 6 5.9463 3.2376 -0.8119 11 6 7.2948 3.4313 -1.1016 12 6 8.0354 4.3075 -0.3604 13 6 7.4374 5.0108 0.6922 14 6 8.2336 5.9585 1.4949 15 8 9.4134 6.1296 1.2425 16 6 7.6269 6.6692 2.5586 17 1 6.5811 6.5179 2.7820 18 6 8.3842 7.5712 3.3220 19 7 9.6477 7.7552 3.0510 20 14 7.5836 8.5094 4.7249 21 1 6.1528 8.1246 4.8248 22 1 8.2741 8.1807 5.9979 23 1 7.6876 9.9683 4.4678 24 6 6.0832 4.8086 0.9843 25 6 5.3478 3.9351 0.2348 26 6 3.5557 1.4644 0.0287 27 8 4.2863 1.0159 0.8893 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8291 2.4494 -3.9971 34 1 2.0354 3.8638 -3.2636 35 1 3.8112 3.7425 -3.2679 36 1 7.7555 2.8880 -1.9133 37 1 9.0809 4.4575 -0.5859 38 1 10.1710 8.3789 3.5784 39 1 5.6195 5.3460 1.7983 40 1 4.3020 3.7822 0.4564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = -118.008696 kcal Electronic energy + Delta-G solvation = -25646.982735 eV Core-core repulsion = 21778.705495 eV Total energy + Delta-G solvation = -3868.277239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.21184 -41.13196 -39.56479 -39.22561 -37.70522 -35.10112 -34.81622 -33.19602 -32.25214 -31.21160 -30.93992 -28.73505 -27.49027 -24.85280 -23.80389 -23.45713 -22.35078 -22.00304 -21.20554 -19.46265 -18.66830 -18.36658 -17.61579 -17.47241 -16.96061 -16.78990 -16.02839 -15.80828 -15.51296 -15.37472 -15.22463 -15.08236 -14.91389 -14.60420 -14.42715 -14.41820 -14.15262 -13.92972 -13.48304 -13.42023 -13.22630 -13.15173 -13.05249 -12.89351 -12.52579 -12.51220 -12.11862 -12.04004 -11.96772 -11.78970 -11.03588 -10.77115 -10.09974 -9.88560 -9.65274 -9.05298 -8.37520 -7.11099 -0.43024 0.11134 0.42825 1.18096 1.35474 1.36328 1.55196 1.59347 2.15143 2.17276 2.19314 2.75958 2.80755 3.28224 3.53499 3.69479 3.71523 3.81877 3.83660 4.02320 4.10833 4.20527 4.26126 4.38408 4.44324 4.48635 4.51698 4.58693 4.69657 4.72824 5.01400 5.02559 5.05947 5.11305 5.14811 5.22873 5.36146 5.37946 5.39567 5.66116 5.74636 5.93652 6.11867 6.53387 6.66541 6.76321 8.21682 8.46131 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.003186 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.595327 B = 8786.641974 C = 9590.277958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.022 3.978 4 H 0.165 0.835 5 O -0.246 6.246 6 C 0.212 3.788 7 C -0.109 4.109 8 C -0.234 4.234 9 O -0.215 6.215 10 C 0.113 3.887 11 C -0.150 4.150 12 C -0.065 4.065 13 C -0.173 4.173 14 C 0.365 3.635 15 O -0.598 6.598 16 C -0.542 4.542 17 H 0.093 0.907 18 C 0.021 3.979 19 N -0.786 5.786 20 Si 0.997 3.003 21 H -0.244 1.244 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.057 4.057 25 C -0.193 4.193 26 C 0.347 3.653 27 O -0.471 6.471 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.153 0.847 37 H 0.121 0.879 38 H 0.283 0.717 39 H 0.135 0.865 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.832 -11.431 -9.809 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.182 0.818 5 O -0.154 6.154 6 C 0.159 3.841 7 C -0.164 4.164 8 C -0.280 4.280 9 O -0.126 6.126 10 C 0.069 3.931 11 C -0.169 4.169 12 C -0.084 4.084 13 C -0.174 4.174 14 C 0.265 3.735 15 O -0.493 6.493 16 C -0.573 4.573 17 H 0.111 0.889 18 C -0.198 4.198 19 N -0.415 5.415 20 Si 0.815 3.185 21 H -0.167 1.167 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.075 4.075 25 C -0.212 4.212 26 C 0.230 3.770 27 O -0.351 6.351 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.153 0.847 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.962 -11.630 -9.726 27.516 hybrid contribution 0.571 0.417 0.935 1.173 sum -22.391 -11.213 -8.790 26.540 Atomic orbital electron populations 1.21749 0.91989 1.03410 1.03203 1.21683 0.99123 0.89868 1.04515 1.24324 0.93297 0.98720 0.87085 0.81801 1.87235 1.26332 1.68787 1.33074 1.23043 0.83672 0.83134 0.94271 1.21107 1.06404 1.01139 0.87795 1.19855 0.85581 1.18539 1.04008 1.84423 1.20661 1.57766 1.49778 1.19632 0.91497 0.89886 0.92043 1.20180 0.90757 1.02386 1.03529 1.20921 0.99786 0.94074 0.93606 1.21525 0.95943 1.00967 0.98949 1.18697 0.87353 0.82380 0.85032 1.90447 1.19274 1.67739 1.71858 1.21437 0.99052 1.22267 1.14519 0.88886 1.27325 0.94767 0.96764 1.00906 1.70111 1.09141 1.27005 1.35211 0.84981 0.79826 0.77731 0.75932 1.16679 1.18897 1.18572 1.21086 0.92649 0.95791 0.98003 1.20903 1.00453 1.01214 0.98634 1.22154 0.92607 0.76691 0.85557 1.90687 1.61574 1.41666 1.41166 0.91564 0.90795 0.91387 0.90568 0.88919 0.85343 0.86329 0.88851 0.82918 0.86135 0.90637 0.84721 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.83 71.98 0.71 -0.45 16 2 C -0.11 -1.41 5.72 30.59 0.17 -1.23 16 3 C 0.02 0.34 3.78 30.13 0.11 0.46 16 4 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 5 O -0.25 -3.52 10.57 -75.40 -0.80 -4.32 16 6 C 0.21 3.57 7.13 24.84 0.18 3.75 16 7 C -0.11 -1.06 10.28 71.24 0.73 -0.33 16 8 C -0.23 -6.01 4.90 22.19 0.11 -5.90 16 9 O -0.22 -6.79 9.73 -34.37 -0.33 -7.12 16 10 C 0.11 4.15 6.65 22.78 0.15 4.30 16 11 C -0.15 -5.74 9.94 22.13 0.22 -5.52 16 12 C -0.07 -3.02 9.55 22.31 0.21 -2.81 16 13 C -0.17 -8.85 5.89 -19.97 -0.12 -8.97 16 14 C 0.36 22.41 6.90 25.55 0.18 22.59 16 15 O -0.60 -41.43 14.88 -4.85 -0.07 -41.51 16 16 C -0.54 -31.35 8.85 23.61 0.21 -31.14 16 17 H 0.09 4.80 6.01 -2.91 -0.02 4.79 16 18 C 0.02 1.18 5.50 85.40 0.47 1.65 16 19 N -0.79 -47.57 11.73 21.89 0.26 -47.32 16 20 Si 1.00 39.96 29.56 68.60 2.03 41.99 16 21 H -0.24 -9.03 7.11 99.48 0.71 -8.33 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 C -0.06 -2.50 9.39 22.31 0.21 -2.29 16 25 C -0.19 -7.28 8.77 22.14 0.19 -7.09 16 26 C 0.35 9.20 5.73 26.73 0.15 9.36 16 27 O -0.47 -16.67 17.96 -3.53 -0.06 -16.73 16 28 H 0.07 0.51 7.92 -2.38 -0.02 0.49 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 36 H 0.15 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.12 5.74 7.65 -2.91 -0.02 5.72 16 38 H 0.28 15.19 8.29 -92.70 -0.77 14.42 16 39 H 0.14 5.62 6.19 -2.91 -0.02 5.60 16 40 H 0.13 4.24 6.13 -2.91 -0.02 4.22 16 Total: -1.00 -84.16 349.64 5.99 -78.17 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 1.08 Total: 20.45 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.89 Total: -23.62 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.26 Total: -47.32 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -1.27 Total: -69.67 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -84.16 5.99 -78.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.838 kcal (2) G-P(sol) polarization free energy of solvation -84.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds