Wall clock time and date at job start Tue Mar 31 2020 11:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31255 * 119.79748 * 2 1 4 4 C 1.33088 * 121.71515 * 179.97438 * 3 2 1 5 5 C 1.47775 * 119.45699 * 179.97438 * 4 3 2 6 6 C 1.39775 * 120.06588 * 0.02562 * 5 4 3 7 7 C 1.37677 * 119.95228 * 179.97438 * 6 5 4 8 8 C 1.39175 * 120.08361 * 359.96898 * 7 6 5 9 9 N 1.39321 * 119.93691 * 180.02562 * 8 7 6 10 10 C 1.46901 * 111.00034 * 59.99972 * 9 8 7 11 11 C 1.46894 * 111.00037 * 296.04695 * 9 8 7 12 12 C 1.39282 * 120.12574 * 0.29898 * 8 7 6 13 13 Cl 1.73598 * 119.97540 * 179.70547 * 12 8 7 14 14 C 1.37772 * 120.04702 * 359.45013 * 12 8 7 15 15 C 1.40000 * 121.08145 * 0.27363 * 4 3 2 16 16 C 1.36536 * 119.46649 * 359.42720 * 15 4 3 17 17 C 1.40963 * 119.79830 * 179.97438 * 2 1 3 18 18 C 1.41011 * 120.54335 * 0.02594 * 17 2 1 19 19 H 1.08002 * 120.00199 * 334.54581 * 18 17 2 20 20 C 1.39977 * 119.99808 * 154.54365 * 18 17 2 21 21 N 1.30820 * 120.00273 * 343.51138 * 20 18 17 22 22 Si 1.86800 * 120.00002 * 163.50832 * 20 18 17 23 23 H 1.48504 * 109.46793 * 94.65919 * 22 20 18 24 24 H 1.48496 * 109.47508 * 214.66251 * 22 20 18 25 25 H 1.48507 * 109.47222 * 334.66502 * 22 20 18 26 26 H 1.08999 * 109.47047 * 90.00540 * 1 2 3 27 27 H 1.09004 * 109.46999 * 210.00174 * 1 2 3 28 28 H 1.09002 * 109.46912 * 330.00375 * 1 2 3 29 29 H 1.08003 * 120.02650 * 359.97438 * 6 5 4 30 30 H 1.08001 * 119.96038 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47176 * 59.99936 * 10 9 8 32 32 H 1.08999 * 109.47331 * 300.00246 * 10 9 8 33 33 H 1.09000 * 109.47224 * 179.97438 * 10 9 8 34 34 H 1.09001 * 109.47553 * 183.95908 * 11 9 8 35 35 H 1.09003 * 109.47190 * 303.95158 * 11 9 8 36 36 H 1.08997 * 109.47638 * 63.95083 * 11 9 8 37 37 H 1.08004 * 120.04437 * 180.26965 * 14 12 8 38 38 H 1.08004 * 120.26626 * 179.70359 * 15 4 3 39 39 H 1.07995 * 120.79249 * 180.28304 * 16 15 4 40 40 H 0.96997 * 120.00394 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1390 0.0000 4 6 3.4894 1.1835 0.0005 5 6 4.1726 2.4939 -0.0001 6 6 3.4238 3.6741 -0.0006 7 6 4.0627 4.8936 -0.0007 8 6 5.4532 4.9526 0.0005 9 7 6.0967 6.1883 0.0010 10 6 5.7306 6.9720 1.1884 11 6 5.8067 6.9333 -1.2313 12 6 6.2028 3.7787 -0.0046 13 17 7.9370 3.8569 -0.0108 14 6 5.5689 2.5555 0.0007 15 6 4.2518 0.0094 -0.0047 16 6 3.6207 -1.2013 0.0016 17 6 2.2075 -1.2232 0.0005 18 6 1.5097 -2.4486 0.0005 19 1 0.5085 -2.4999 0.4021 20 6 2.1148 -3.5985 -0.5200 21 7 3.1694 -3.4927 -1.2869 22 14 1.4165 -5.2842 -0.1196 23 1 0.4883 -5.7047 -1.1998 24 1 2.5252 -6.2659 -0.0095 25 1 0.6807 -5.2219 1.1689 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 2.3447 3.6295 -0.0011 30 1 3.4843 5.8056 -0.0015 31 1 6.0200 6.4269 2.0869 32 1 4.6535 7.1388 1.1957 33 1 6.2471 7.9316 1.1638 34 1 6.3764 7.8626 -1.2368 35 1 6.0872 6.3303 -2.0950 36 1 4.7416 7.1599 -1.2770 37 1 6.1501 1.6452 0.0011 38 1 5.3306 0.0609 -0.0090 39 1 4.1878 -2.1204 0.0023 40 1 3.5884 -4.2895 -1.6479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244412587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:35 Heat of formation + Delta-G solvation = 33.021735 kcal Electronic energy + Delta-G solvation = -22945.664208 eV Core-core repulsion = 19556.938056 eV Total energy + Delta-G solvation = -3388.726153 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.08097 -40.17492 -37.65971 -37.26196 -35.95370 -33.75846 -32.73121 -31.70593 -30.61927 -28.75397 -28.45725 -27.08433 -25.26246 -23.88252 -23.24499 -22.01286 -21.49353 -19.31035 -18.38764 -17.50382 -17.07377 -16.82183 -16.20945 -16.01465 -15.76511 -15.29709 -15.03055 -14.95881 -14.78265 -14.33298 -14.07992 -13.96030 -13.53577 -13.35634 -13.20426 -13.19147 -13.07463 -12.79209 -12.64563 -12.59965 -12.55486 -12.42582 -12.25356 -12.13753 -11.68548 -11.57448 -11.24535 -10.27645 -10.05568 -9.97298 -9.72533 -9.47261 -8.98268 -8.72954 -6.40792 -0.16683 0.28534 0.89407 1.08979 1.25997 1.39453 1.50544 1.56144 2.14762 2.48846 2.88127 2.88684 3.64657 3.68159 3.86210 4.16173 4.18820 4.27243 4.35351 4.44553 4.49139 4.55949 4.66595 4.67962 4.73232 4.79123 4.93317 4.96151 5.00448 5.00972 5.01819 5.07886 5.17314 5.23634 5.34377 5.49269 5.60661 5.64537 5.81947 5.92321 5.96853 6.01445 6.33856 6.45277 6.66586 6.74288 7.67352 8.14849 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.003047 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.573982 B = 9187.204275 C =10089.436161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.011 4.011 3 N -0.455 5.455 4 C -0.015 4.015 5 C 0.007 3.993 6 C -0.104 4.104 7 C -0.125 4.125 8 C 0.073 3.927 9 N -0.513 5.513 10 C 0.029 3.971 11 C 0.030 3.970 12 C -0.012 4.012 13 Cl -0.058 7.058 14 C -0.125 4.125 15 C -0.130 4.130 16 C -0.165 4.165 17 C 0.047 3.953 18 C -0.453 4.453 19 H 0.100 0.900 20 C 0.033 3.967 21 N -0.808 5.808 22 Si 0.988 3.012 23 H -0.260 1.260 24 H -0.268 1.268 25 H -0.253 1.253 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.128 0.872 30 H 0.148 0.852 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 12.316 1.835 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.157 4.157 3 N -0.164 5.164 4 C -0.149 4.149 5 C 0.005 3.995 6 C -0.123 4.123 7 C -0.145 4.145 8 C -0.022 4.022 9 N -0.234 5.234 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.040 4.040 13 Cl -0.029 7.029 14 C -0.145 4.145 15 C -0.150 4.150 16 C -0.190 4.190 17 C 0.042 3.958 18 C -0.481 4.481 19 H 0.118 0.882 20 C -0.185 4.185 21 N -0.432 5.432 22 Si 0.807 3.193 23 H -0.184 1.184 24 H -0.192 1.192 25 H -0.176 1.176 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.729 12.919 1.695 13.553 hybrid contribution -0.180 -1.756 -0.139 1.771 sum 3.549 11.162 1.556 11.816 Atomic orbital electron populations 1.20252 0.88563 1.01865 1.01421 1.21586 0.96987 0.87747 1.09363 1.66813 1.08947 1.30402 1.10192 1.19103 0.89178 0.91721 1.14884 1.18581 0.91804 0.91881 0.97198 1.21227 1.00583 0.91086 0.99429 1.21583 0.93843 0.98231 1.00833 1.18529 0.90177 0.90576 1.02924 1.59457 1.57619 1.01618 1.04693 1.22500 0.99626 0.98265 0.91361 1.22486 1.00146 0.98641 0.90385 1.20698 0.84947 0.93275 1.05075 1.98324 1.08940 1.98758 1.96834 1.21027 0.93443 0.96879 1.03202 1.21531 0.99735 0.93170 1.00568 1.21325 0.95038 0.96871 1.05728 1.18777 0.92967 0.94360 0.89672 1.20013 1.02542 0.92489 1.33088 0.88236 1.26966 0.94222 1.05562 0.91712 1.69839 1.18113 1.34080 1.21132 0.85088 0.78953 0.74980 0.80240 1.18430 1.19231 1.17592 0.92314 0.90982 0.91838 0.85444 0.83437 0.92066 0.94387 0.88874 0.88875 0.92258 0.94391 0.84930 0.86188 0.86666 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.52 9.79 71.24 0.70 -1.82 16 2 C -0.01 -0.54 6.86 43.31 0.30 -0.24 16 3 N -0.46 -21.91 9.29 -171.02 -1.59 -23.50 16 4 C -0.02 -0.70 6.74 41.90 0.28 -0.42 16 5 C 0.01 0.26 5.88 -20.02 -0.12 0.14 16 6 C -0.10 -3.60 9.56 22.51 0.22 -3.39 16 7 C -0.12 -3.51 8.58 22.36 0.19 -3.32 16 8 C 0.07 2.06 4.72 38.43 0.18 2.24 16 9 N -0.51 -11.72 4.36 -744.81 -3.25 -14.97 16 10 C 0.03 0.52 9.34 127.69 1.19 1.71 16 11 C 0.03 0.55 9.32 127.69 1.19 1.74 16 12 C -0.01 -0.38 6.33 22.41 0.14 -0.24 16 13 Cl -0.06 -1.63 28.42 -2.72 -0.08 -1.71 16 14 C -0.13 -4.44 9.18 22.53 0.21 -4.23 16 15 C -0.13 -6.14 9.38 22.30 0.21 -5.93 16 16 C -0.16 -8.44 8.72 22.63 0.20 -8.25 16 17 C 0.05 2.42 5.58 -21.17 -0.12 2.30 16 18 C -0.45 -22.06 8.46 23.37 0.20 -21.86 16 19 H 0.10 4.48 6.26 -2.91 -0.02 4.47 16 20 C 0.03 1.53 5.18 85.27 0.44 1.97 16 21 N -0.81 -39.09 10.97 21.83 0.24 -38.85 16 22 Si 0.99 34.32 29.59 68.60 2.03 36.35 16 23 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 24 H -0.27 -9.01 7.11 99.48 0.71 -8.31 16 25 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 2.69 6.25 -2.38 -0.01 2.68 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.13 4.56 7.51 -2.91 -0.02 4.54 16 30 H 0.15 3.29 7.02 -2.91 -0.02 3.27 16 31 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.04 0.63 7.10 -2.39 -0.02 0.62 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.04 0.64 7.45 -2.39 -0.02 0.62 16 37 H 0.13 4.60 6.14 -2.91 -0.02 4.58 16 38 H 0.12 5.01 6.14 -2.91 -0.02 4.99 16 39 H 0.12 6.02 6.28 -2.91 -0.02 6.00 16 40 H 0.30 12.81 8.30 -92.71 -0.77 12.04 16 Total: -1.00 -57.04 344.87 3.83 -53.21 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 1.07 Total: 29.07 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 5.41 Total: -39.60 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -4.60 Total: -77.32 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -57.04 3.83 -53.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244412587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.231 kcal (2) G-P(sol) polarization free energy of solvation -57.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds