Wall clock time and date at job start Tue Mar 31 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21304 * 120.00177 * 2 1 4 4 C 1.46825 * 119.99934 * 180.02562 * 2 1 3 5 5 C 1.40094 * 120.06567 * 0.02562 * 4 2 1 6 6 C 1.36462 * 120.14975 * 180.02562 * 5 4 2 7 7 C 1.39649 * 120.27741 * 0.02562 * 6 5 4 8 8 C 1.48232 * 119.93524 * 179.97438 * 7 6 5 9 9 C 1.39447 * 120.13075 * 310.00369 * 8 7 6 10 10 C 1.37976 * 119.86862 * 179.97438 * 9 8 7 11 11 C 1.38356 * 120.12863 * 0.26027 * 10 9 8 12 12 C 1.38321 * 120.26265 * 359.47905 * 11 10 9 13 13 C 1.50703 * 119.93231 * 180.28201 * 12 11 10 14 14 C 1.50698 * 109.47244 * 270.23218 * 13 12 11 15 15 H 1.08008 * 119.99996 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00222 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99876 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46962 * 59.99984 * 18 16 14 20 20 H 1.48501 * 109.47005 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47156 * 299.99999 * 18 16 14 22 22 C 1.38005 * 120.12723 * 0.52156 * 12 11 10 23 23 C 1.39582 * 120.13100 * 0.25472 * 7 6 5 24 24 F 1.35095 * 120.07516 * 179.72781 * 23 7 6 25 25 C 1.38242 * 119.84675 * 359.44921 * 23 7 6 26 26 F 1.35100 * 120.13882 * 180.28940 * 25 23 7 27 27 H 1.09000 * 109.47168 * 269.99698 * 1 2 3 28 28 H 1.09006 * 109.46891 * 29.99602 * 1 2 3 29 29 H 1.08998 * 109.46994 * 149.99258 * 1 2 3 30 30 H 1.07995 * 119.92766 * 359.97438 * 5 4 2 31 31 H 1.07993 * 119.86294 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.06471 * 359.95480 * 9 8 7 33 33 H 1.08002 * 119.93087 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.86817 * 179.72308 * 11 10 9 35 35 H 1.08996 * 109.47360 * 30.23774 * 13 12 11 36 36 H 1.09001 * 109.46756 * 150.23427 * 13 12 11 37 37 H 0.97000 * 119.99946 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.06448 * 179.72096 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2411 -1.2716 -0.0006 5 6 1.5420 -2.4856 -0.0017 6 6 2.2226 -3.6684 -0.0017 7 6 3.6190 -3.6772 0.0000 8 6 4.3506 -4.9664 0.0005 9 6 4.0207 -5.9581 0.9238 10 6 4.7048 -7.1563 0.9191 11 6 5.7200 -7.3728 0.0043 12 6 6.0481 -6.3950 -0.9173 13 6 7.1509 -6.6412 -1.9145 14 6 8.4647 -6.1864 -1.3330 15 1 8.4979 -5.7619 -0.3404 16 6 9.6243 -6.3122 -2.0681 17 7 9.5840 -6.8295 -3.2765 18 14 11.2530 -5.7491 -1.3470 19 1 11.5328 -6.5097 -0.1026 20 1 12.3397 -5.9916 -2.3296 21 1 11.1814 -4.2990 -1.0352 22 6 5.3708 -5.1925 -0.9223 23 6 4.3273 -2.4745 0.0070 24 9 5.6782 -2.4844 0.0141 25 6 3.6433 -1.2732 0.0008 26 9 4.3229 -0.1056 0.0016 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.4621 -2.4855 -0.0017 31 1 1.6790 -4.6015 -0.0021 32 1 3.2315 -5.7884 1.6412 33 1 4.4504 -7.9248 1.6340 34 1 6.2557 -8.3105 0.0074 35 1 7.2035 -7.7057 -2.1426 36 1 6.9456 -6.0836 -2.8283 37 1 10.3999 -6.9183 -3.7935 38 1 5.6309 -4.4280 -1.6395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244702650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:44 Heat of formation + Delta-G solvation = -85.963681 kcal Electronic energy + Delta-G solvation = -24923.381898 eV Core-core repulsion = 20945.406719 eV Total energy + Delta-G solvation = -3977.975179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.48172 -48.52774 -40.17014 -39.13565 -37.94164 -33.79694 -32.80841 -31.38296 -30.95265 -30.41072 -28.73850 -27.11323 -24.67081 -23.51009 -22.79003 -21.65480 -20.67599 -20.06503 -17.90292 -17.35752 -17.15011 -16.47948 -16.37002 -16.06430 -15.79041 -15.28059 -15.11869 -14.88447 -14.85476 -14.60689 -14.48047 -14.23014 -13.71438 -13.05495 -12.84122 -12.71823 -12.60790 -12.53713 -12.25147 -12.14262 -12.09491 -11.73550 -11.35546 -11.18811 -10.83531 -10.57892 -10.42453 -10.08183 -9.64624 -9.60846 -9.34624 -9.01243 -8.45077 -8.26207 -7.95152 -6.07623 -4.11688 0.00006 0.73401 1.60575 1.93543 2.10409 3.16939 3.31865 3.33163 3.35640 3.39746 3.75231 4.16855 4.24592 4.28933 4.39797 4.48089 4.60283 4.65263 4.93830 5.00836 5.24913 5.26911 5.28496 5.34905 5.39240 5.60134 5.62708 5.70176 5.80987 5.85053 5.91995 6.11072 6.34008 6.45322 6.56602 6.81647 6.97895 7.03490 7.15284 7.40193 7.53891 7.72714 7.87914 8.26126 8.93039 9.52721 11.02323 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.003438 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.614667 B = 8142.081050 C = 9319.657128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.393 3.607 3 O -0.445 6.445 4 C -0.196 4.196 5 C -0.055 4.055 6 C -0.109 4.109 7 C 0.005 3.995 8 C -0.083 4.083 9 C -0.121 4.121 10 C -0.125 4.125 11 C -0.107 4.107 12 C -0.032 4.032 13 C 0.048 3.952 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.091 4.091 23 C 0.062 3.938 24 F -0.110 7.110 25 C 0.127 3.873 26 F -0.107 7.107 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 6.120 7.629 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.270 3.730 3 O -0.320 6.320 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.127 4.127 7 C 0.003 3.997 8 C -0.083 4.083 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.125 4.125 12 C -0.032 4.032 13 C 0.011 3.989 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.109 4.109 23 C 0.042 3.958 24 F -0.088 7.088 25 C 0.107 3.893 26 F -0.085 7.085 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.852 6.690 7.469 23.137 hybrid contribution 1.461 0.405 0.341 1.554 sum -19.391 7.094 7.810 22.075 Atomic orbital electron populations 1.22205 0.92854 1.05214 1.04978 1.22276 0.91948 0.86905 0.71846 1.90635 1.72002 1.33944 1.35407 1.20511 0.91235 0.97112 1.10977 1.21052 1.00711 0.90061 0.95534 1.20924 0.91928 0.99237 1.00604 1.19144 0.93561 0.91428 0.95520 1.18457 0.98556 0.91937 0.99375 1.20847 1.00897 0.93366 0.98819 1.20979 0.97039 0.96883 0.99352 1.21282 0.96513 0.99812 0.94909 1.20665 0.94565 0.91839 0.96178 1.18377 0.90093 0.98126 0.92316 1.20999 0.91048 1.41433 1.01754 0.92468 1.24993 0.99229 0.95107 0.94848 1.69939 1.28478 1.44601 1.10232 0.86596 0.82858 0.79450 0.78834 1.20118 1.21174 1.20049 1.21158 0.93881 0.97656 0.98185 1.17678 0.78551 0.92281 1.07319 1.91635 1.26606 1.96982 1.93615 1.17839 0.89549 0.80801 1.01152 1.91611 1.79326 1.44739 1.92797 0.88214 0.89129 0.89254 0.83287 0.83420 0.86592 0.86412 0.85979 0.95081 0.95232 0.92720 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 9.75 36.00 0.35 -0.66 16 2 C 0.39 4.05 7.21 -30.84 -0.22 3.83 16 3 O -0.45 -6.48 16.07 5.54 0.09 -6.39 16 4 C -0.20 -2.13 5.88 -104.99 -0.62 -2.75 16 5 C -0.06 -0.42 9.30 -39.53 -0.37 -0.79 16 6 C -0.11 -1.01 9.43 -39.70 -0.37 -1.39 16 7 C 0.00 0.06 5.49 -104.76 -0.57 -0.51 16 8 C -0.08 -1.31 5.30 -104.90 -0.56 -1.87 16 9 C -0.12 -1.70 9.50 -39.23 -0.37 -2.07 16 10 C -0.12 -1.84 10.03 -39.63 -0.40 -2.24 16 11 C -0.11 -1.94 9.69 -39.51 -0.38 -2.32 16 12 C -0.03 -0.68 5.06 -104.67 -0.53 -1.21 16 13 C 0.05 1.20 5.10 -29.03 -0.15 1.05 16 14 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.09 -1.74 8.51 -39.23 -0.33 -2.08 16 23 C 0.06 0.95 7.16 -39.08 -0.28 0.67 16 24 F -0.11 -2.04 15.81 2.25 0.04 -2.00 16 25 C 0.13 1.83 7.29 -38.84 -0.28 1.55 16 26 F -0.11 -1.77 15.45 2.25 0.03 -1.74 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.25 6.45 -51.93 -0.33 -0.09 16 30 H 0.15 0.51 6.33 -52.49 -0.33 0.18 16 31 H 0.15 1.01 8.03 -52.49 -0.42 0.59 16 32 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.12 2.40 7.80 -52.48 -0.41 1.99 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -32.99 341.99 -8.46 -41.46 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.99 Total: -3.80 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -5.50 Total: -23.86 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.09 Total: -6.39 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.07 Total: -3.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.99 -8.46 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244702650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.507 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds