Wall clock time and date at job start Tue Mar 31 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21304 * 120.00177 * 2 1 4 4 C 1.46825 * 119.99934 * 180.02562 * 2 1 3 5 5 C 1.40094 * 120.06567 * 0.02562 * 4 2 1 6 6 C 1.36462 * 120.14975 * 180.02562 * 5 4 2 7 7 C 1.39649 * 120.27741 * 0.02562 * 6 5 4 8 8 C 1.48232 * 119.93524 * 179.97438 * 7 6 5 9 9 C 1.39447 * 120.13075 * 310.00369 * 8 7 6 10 10 C 1.37976 * 119.86862 * 179.97438 * 9 8 7 11 11 C 1.38356 * 120.12863 * 0.26027 * 10 9 8 12 12 C 1.38321 * 120.26265 * 359.47905 * 11 10 9 13 13 C 1.50703 * 119.93231 * 180.28201 * 12 11 10 14 14 C 1.50698 * 109.47244 * 270.23218 * 13 12 11 15 15 H 1.08008 * 119.99996 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00222 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99876 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00141 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46962 * 59.99984 * 18 16 14 20 20 H 1.48501 * 109.47005 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47156 * 299.99999 * 18 16 14 22 22 C 1.38005 * 120.12723 * 0.52156 * 12 11 10 23 23 C 1.39582 * 120.13100 * 0.25472 * 7 6 5 24 24 F 1.35095 * 120.07516 * 179.72781 * 23 7 6 25 25 C 1.38242 * 119.84675 * 359.44921 * 23 7 6 26 26 F 1.35100 * 120.13882 * 180.28940 * 25 23 7 27 27 H 1.09000 * 109.47168 * 269.99698 * 1 2 3 28 28 H 1.09006 * 109.46891 * 29.99602 * 1 2 3 29 29 H 1.08998 * 109.46994 * 149.99258 * 1 2 3 30 30 H 1.07995 * 119.92766 * 359.97438 * 5 4 2 31 31 H 1.07993 * 119.86294 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.06471 * 359.95480 * 9 8 7 33 33 H 1.08002 * 119.93087 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.86817 * 179.72308 * 11 10 9 35 35 H 1.08996 * 109.47360 * 30.23774 * 13 12 11 36 36 H 1.09001 * 109.46756 * 150.23427 * 13 12 11 37 37 H 0.97000 * 119.99946 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.06448 * 179.72096 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2411 -1.2716 -0.0006 5 6 1.5420 -2.4856 -0.0017 6 6 2.2226 -3.6684 -0.0017 7 6 3.6190 -3.6772 0.0000 8 6 4.3506 -4.9664 0.0005 9 6 4.0207 -5.9581 0.9238 10 6 4.7048 -7.1563 0.9191 11 6 5.7200 -7.3728 0.0043 12 6 6.0481 -6.3950 -0.9173 13 6 7.1509 -6.6412 -1.9145 14 6 8.4647 -6.1864 -1.3330 15 1 8.4979 -5.7619 -0.3404 16 6 9.6243 -6.3122 -2.0681 17 7 9.5840 -6.8295 -3.2765 18 14 11.2530 -5.7491 -1.3470 19 1 11.5328 -6.5097 -0.1026 20 1 12.3397 -5.9916 -2.3296 21 1 11.1814 -4.2990 -1.0352 22 6 5.3708 -5.1925 -0.9223 23 6 4.3273 -2.4745 0.0070 24 9 5.6782 -2.4844 0.0141 25 6 3.6433 -1.2732 0.0008 26 9 4.3229 -0.1056 0.0016 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.4621 -2.4855 -0.0017 31 1 1.6790 -4.6015 -0.0021 32 1 3.2315 -5.7884 1.6412 33 1 4.4504 -7.9248 1.6340 34 1 6.2557 -8.3105 0.0074 35 1 7.2035 -7.7057 -2.1426 36 1 6.9456 -6.0836 -2.8283 37 1 10.3999 -6.9183 -3.7935 38 1 5.6309 -4.4280 -1.6395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244702650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:43 Heat of formation + Delta-G solvation = -104.301860 kcal Electronic energy + Delta-G solvation = -24924.177101 eV Core-core repulsion = 20945.406719 eV Total energy + Delta-G solvation = -3978.770382 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.66346 -49.74622 -41.08759 -40.28345 -39.00435 -35.61683 -34.10786 -32.90788 -31.94299 -31.30062 -29.66608 -28.90628 -25.66002 -25.34759 -23.86816 -22.84787 -21.83591 -21.18233 -18.97263 -18.59667 -18.34732 -18.15267 -17.61873 -17.34512 -16.74039 -16.61246 -16.32090 -16.11845 -15.97042 -15.83358 -15.69590 -15.38925 -14.80504 -14.59464 -14.20587 -14.06523 -13.61421 -13.44185 -13.29037 -13.20450 -13.16306 -12.97171 -12.81394 -12.71762 -12.63198 -12.36741 -11.92992 -11.64510 -11.41730 -10.90767 -10.66338 -10.46414 -9.97461 -9.60090 -9.32308 -8.26498 -6.39507 -0.91476 -0.20629 0.42357 0.59625 1.21835 1.33610 1.36643 1.44771 2.30881 2.35040 2.44010 2.88167 2.98973 3.04223 3.19318 3.35486 3.57441 3.76623 4.01340 4.10696 4.14914 4.32237 4.37140 4.44267 4.61746 4.67425 4.74198 4.74996 4.86990 4.88723 4.99229 5.04833 5.17473 5.27369 5.29477 5.31726 5.51265 5.53490 5.61075 5.70179 6.01073 6.05575 6.18733 6.42316 6.72447 7.29003 8.82779 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.003438 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.614667 B = 8142.081050 C = 9319.657128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.391 3.609 3 O -0.501 6.501 4 C -0.194 4.194 5 C -0.020 4.020 6 C -0.087 4.087 7 C -0.012 4.012 8 C -0.076 4.076 9 C -0.102 4.102 10 C -0.109 4.109 11 C -0.123 4.123 12 C -0.067 4.067 13 C 0.057 3.943 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.115 4.115 23 C 0.026 3.974 24 F -0.145 7.145 25 C 0.092 3.908 26 F -0.134 7.134 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.213 0.787 31 H 0.191 0.809 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.119 0.881 35 H 0.010 0.990 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.036 5.359 10.217 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.272 3.728 3 O -0.379 6.379 4 C -0.196 4.196 5 C -0.037 4.037 6 C -0.105 4.105 7 C -0.013 4.013 8 C -0.076 4.076 9 C -0.119 4.119 10 C -0.127 4.127 11 C -0.141 4.141 12 C -0.067 4.067 13 C 0.020 3.980 14 C -0.570 4.570 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.133 4.133 23 C 0.006 3.994 24 F -0.124 7.124 25 C 0.072 3.928 26 F -0.112 7.112 27 H 0.144 0.856 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.230 0.770 31 H 0.208 0.792 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.137 0.863 35 H 0.028 0.972 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.529 5.911 10.061 28.070 hybrid contribution 2.723 0.671 -0.447 2.840 sum -22.806 6.582 9.614 25.610 Atomic orbital electron populations 1.22295 0.87764 1.07132 1.07072 1.23195 0.94417 0.85569 0.69626 1.90633 1.73577 1.35633 1.38068 1.21014 0.89599 0.99406 1.09613 1.21721 1.03303 0.87532 0.91165 1.21435 0.89615 1.01713 0.97724 1.19229 0.95414 0.89253 0.97403 1.18645 0.97154 0.93542 0.98246 1.21413 1.00895 0.91778 0.97821 1.21406 0.94832 0.98227 0.98222 1.21340 0.98189 0.99008 0.95544 1.20281 0.95000 0.94100 0.97277 1.18089 0.91490 0.95919 0.92508 1.21329 0.92720 1.41334 1.01576 0.93218 1.25887 1.02990 0.95098 0.95207 1.70055 1.29570 1.45633 1.11461 0.85559 0.78467 0.78821 0.78614 1.18785 1.20070 1.20081 1.20979 0.96139 0.96502 0.99672 1.18137 0.77396 0.93896 1.09935 1.91532 1.29323 1.97231 1.94264 1.18320 0.91281 0.79676 1.03548 1.91531 1.80212 1.46047 1.93399 0.85608 0.89048 0.85561 0.77012 0.79169 0.81399 0.82052 0.86315 0.97154 0.98537 0.92443 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.92 9.75 71.24 0.69 -0.23 16 2 C 0.39 7.13 7.21 27.93 0.20 7.33 16 3 O -0.50 -14.70 16.07 -3.10 -0.05 -14.75 16 4 C -0.19 -3.73 5.88 -20.10 -0.12 -3.84 16 5 C -0.02 -0.18 9.30 22.31 0.21 0.03 16 6 C -0.09 -1.13 9.43 22.20 0.21 -0.92 16 7 C -0.01 -0.30 5.49 -19.96 -0.11 -0.41 16 8 C -0.08 -2.31 5.30 -20.05 -0.11 -2.41 16 9 C -0.10 -2.40 9.50 22.50 0.21 -2.18 16 10 C -0.11 -2.85 10.03 22.24 0.22 -2.63 16 11 C -0.12 -4.47 9.69 22.32 0.22 -4.25 16 12 C -0.07 -2.97 5.06 -19.90 -0.10 -3.07 16 13 C 0.06 3.14 5.10 29.10 0.15 3.28 16 14 C -0.53 -31.67 9.09 25.60 0.23 -31.44 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.40 5.46 84.65 0.46 0.86 16 17 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 18 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 C -0.11 -4.69 8.51 22.50 0.19 -4.50 16 23 C 0.03 0.85 7.16 22.60 0.16 1.01 16 24 F -0.14 -5.94 15.81 44.97 0.71 -5.22 16 25 C 0.09 2.74 7.29 22.75 0.17 2.91 16 26 F -0.13 -4.85 15.45 44.97 0.69 -4.16 16 27 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.13 -0.30 6.45 -2.39 -0.02 -0.32 16 30 H 0.21 -0.65 6.33 -2.91 -0.02 -0.67 16 31 H 0.19 0.99 8.03 -2.91 -0.02 0.96 16 32 H 0.17 2.31 8.04 -2.91 -0.02 2.29 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 36 H 0.00 -0.22 8.08 -2.39 -0.02 -0.24 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.09 4.08 7.80 -2.91 -0.02 4.06 16 Total: -1.00 -84.92 341.99 7.66 -77.26 By element: Atomic # 1 Polarization: -4.97 SS G_CDS: 1.10 Total: -3.87 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 2.89 Total: -40.48 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.05 Total: -14.75 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 1.41 Total: -9.38 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -84.92 7.66 -77.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244702650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.038 kcal (2) G-P(sol) polarization free energy of solvation -84.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds