Wall clock time and date at job start Tue Mar 31 2020 11:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48509 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47031 * 299.99600 * 3 2 1 6 6 H 1.48495 * 109.47465 * 60.00265 * 3 2 1 7 7 C 1.39024 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99967 * 161.10983 * 7 2 1 9 9 N 1.36909 * 119.99906 * 341.09502 * 7 2 1 10 10 C 1.34776 * 119.99385 * 137.39960 * 9 7 2 11 11 O 1.21622 * 119.99851 * 187.35788 * 10 9 7 12 12 C 1.47466 * 120.00509 * 7.36414 * 10 9 7 13 13 C 1.39614 * 120.68341 * 328.10250 * 12 10 9 14 14 C 1.39927 * 118.13922 * 179.97438 * 13 12 10 15 15 C 1.39869 * 119.89424 * 359.81805 * 14 13 12 16 16 N 1.32154 * 119.97266 * 0.34704 * 15 14 13 17 17 C 1.32182 * 122.37710 * 359.75092 * 16 15 14 18 18 O 1.35224 * 119.50318 * 179.97438 * 17 16 15 19 19 C 1.50625 * 121.28560 * 180.66722 * 15 14 13 20 20 C 1.52595 * 111.23373 * 337.10706 * 19 15 14 21 21 C 1.53432 * 109.42293 * 54.85430 * 20 19 15 22 22 C 1.47262 * 119.75452 * 179.79181 * 14 13 12 23 23 O 1.21281 * 121.17183 * 348.61428 * 22 14 13 24 24 C 1.46490 * 120.00445 * 317.40889 * 9 7 2 25 25 C 1.53005 * 117.50060 * 350.64326 * 24 9 7 26 26 C 1.53000 * 117.49777 * 281.98656 * 24 9 7 27 27 H 0.97001 * 119.99881 * 5.05951 * 1 2 3 28 28 H 1.08001 * 120.93274 * 359.95285 * 13 12 10 29 29 H 0.96705 * 114.00044 * 90.00502 * 18 17 16 30 30 H 1.08993 * 109.13913 * 216.64929 * 19 15 14 31 31 H 1.09000 * 109.11763 * 97.54670 * 19 15 14 32 32 H 1.09000 * 109.48199 * 294.85814 * 20 19 15 33 33 H 1.09006 * 109.47348 * 174.84075 * 20 19 15 34 34 H 1.08999 * 109.88104 * 55.41073 * 21 20 19 35 35 H 1.09003 * 109.88400 * 176.49539 * 21 20 19 36 36 H 1.09008 * 115.55546 * 136.31826 * 24 9 7 37 37 H 1.09008 * 117.49394 * 0.02562 * 25 24 9 38 38 H 1.08996 * 117.49899 * 145.01935 * 25 24 9 39 39 H 1.09000 * 117.50177 * 214.98007 * 26 24 9 40 40 H 1.09002 * 117.49722 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0088 -1.2040 -0.0005 8 1 3.0452 -1.2291 -0.3034 9 7 1.3796 -2.3578 0.3831 10 6 1.5723 -3.4945 -0.3150 11 8 0.9139 -4.4845 -0.0588 12 6 2.5815 -3.5379 -1.3894 13 6 2.8646 -2.4001 -2.1474 14 6 3.8322 -2.5011 -3.1531 15 6 4.4865 -3.7179 -3.3713 16 7 4.1853 -4.7713 -2.6323 17 6 3.2778 -4.7264 -1.6723 18 8 3.0149 -5.8400 -0.9518 19 6 5.5436 -3.8579 -4.4352 20 6 5.3844 -2.7924 -5.5159 21 6 5.3798 -1.4027 -4.8656 22 6 4.1555 -1.3242 -3.9771 23 8 3.4656 -0.3272 -3.9457 24 6 0.4969 -2.3570 1.5522 25 6 0.4873 -1.1033 2.4293 26 6 1.1540 -2.3855 2.9336 27 1 -0.4850 0.8368 -0.0741 28 1 2.3509 -1.4682 -1.9629 29 1 3.5639 -5.9359 -0.1615 30 1 5.4628 -4.8443 -4.8916 31 1 6.5272 -3.7570 -3.9765 32 1 4.4446 -2.9492 -6.0454 33 1 6.2140 -2.8618 -6.2196 34 1 6.2812 -1.2705 -4.2673 35 1 5.3289 -0.6331 -5.6359 36 1 -0.4441 -2.8938 1.4313 37 1 1.1375 -0.2790 2.1361 38 1 -0.4599 -0.8156 2.8855 39 1 0.6453 -2.9409 3.7215 40 1 2.2432 -2.4046 2.9725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318031616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:54 Heat of formation + Delta-G solvation = -31.779738 kcal Electronic energy + Delta-G solvation = -27159.355226 eV Core-core repulsion = 23327.109906 eV Total energy + Delta-G solvation = -3832.245320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77440 -39.13551 -38.36907 -36.95461 -35.99080 -35.14324 -33.50828 -32.22245 -31.31842 -29.75281 -28.45992 -25.44197 -24.16322 -23.54219 -21.80875 -21.50537 -21.27867 -19.83765 -19.08148 -18.25603 -17.40843 -16.97179 -16.09487 -15.63401 -15.39381 -15.11748 -14.99894 -14.60796 -14.49392 -14.05098 -13.94436 -13.59295 -13.29149 -13.12331 -12.83821 -12.60133 -12.24002 -12.03000 -11.76766 -11.62014 -11.50555 -11.23745 -11.15588 -11.09274 -10.89963 -10.50531 -10.45304 -9.92427 -9.72433 -9.48491 -9.22257 -9.20747 -8.91082 -8.58762 -8.40705 -7.50722 -6.54170 -4.25769 0.66617 1.41649 2.47932 3.03869 3.15099 3.17061 3.56399 3.68333 3.94501 4.11160 4.24652 4.42439 4.53476 4.69805 4.70084 4.82673 4.97233 5.08663 5.17343 5.40539 5.41665 5.51350 5.59642 5.68934 5.74082 5.84851 5.91117 5.97278 6.01899 6.05217 6.18082 6.40191 6.47289 6.48322 6.75957 6.87662 6.95883 7.17497 7.24380 7.67809 7.81454 7.81698 8.07452 8.16780 8.86655 9.30096 9.74507 10.47795 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.006370 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.585001 B = 4394.639102 C = 6192.439017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.404 5.404 10 C 0.521 3.479 11 O -0.576 6.576 12 C -0.175 4.175 13 C 0.037 3.963 14 C -0.256 4.256 15 C 0.203 3.797 16 N -0.528 5.528 17 C 0.376 3.624 18 O -0.460 6.460 19 C -0.073 4.073 20 C -0.112 4.112 21 C -0.164 4.164 22 C 0.403 3.597 23 O -0.445 6.445 24 C 0.118 3.882 25 C -0.139 4.139 26 C -0.217 4.217 27 H 0.274 0.726 28 H 0.193 0.807 29 H 0.398 0.602 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.251 -1.749 -5.314 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.497 4.497 8 H 0.108 0.892 9 N -0.121 5.121 10 C 0.309 3.691 11 O -0.460 6.460 12 C -0.182 4.182 13 C 0.012 3.988 14 C -0.260 4.260 15 C 0.063 3.937 16 N -0.248 5.248 17 C 0.196 3.804 18 O -0.267 6.267 19 C -0.111 4.111 20 C -0.150 4.150 21 C -0.201 4.201 22 C 0.280 3.720 23 O -0.319 6.319 24 C 0.013 3.987 25 C -0.177 4.177 26 C -0.256 4.256 27 H 0.085 0.915 28 H 0.210 0.790 29 H 0.257 0.743 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.301 -2.482 -5.585 11.978 hybrid contribution 0.292 1.611 0.636 1.756 sum 10.593 -0.871 -4.949 11.724 Atomic orbital electron populations 1.69973 1.06162 1.28317 1.41943 1.25345 0.95149 0.99565 0.94686 0.86288 0.80474 0.82202 0.78550 1.18900 1.19811 1.20018 1.19384 0.95862 0.84856 1.49636 0.89175 1.42684 1.40298 1.07390 1.21740 1.17685 0.84672 0.84649 0.82071 1.90689 1.49579 1.36168 1.69586 1.21177 1.02368 0.93101 1.01535 1.23321 0.88967 1.00389 0.86128 1.21203 1.04566 0.96971 1.03242 1.21288 0.92796 0.86893 0.92731 1.66948 1.17912 1.31635 1.08282 1.19303 0.87990 0.84452 0.88641 1.84696 1.61718 1.39942 1.40308 1.20409 0.96448 1.00849 0.93383 1.21508 1.03547 0.92432 0.97510 1.22332 0.98372 0.99302 1.00123 1.22435 0.84939 0.85119 0.79530 1.90588 1.49128 1.32071 1.60070 1.21040 0.94326 1.01499 0.81850 1.22973 1.01081 0.92235 1.01371 1.23418 0.99918 1.03519 0.98773 0.91547 0.79046 0.74310 0.88923 0.89013 0.90949 0.89720 0.87989 0.88713 0.87873 0.87782 0.90250 0.90049 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.99 11.46 55.50 0.64 -20.35 16 2 C 0.06 1.52 3.08 -17.46 -0.05 1.47 16 3 Si 0.90 19.03 29.28 -169.99 -4.98 14.06 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.37 -8.96 5.69 -14.99 -0.09 -9.05 16 8 H 0.09 2.14 6.05 -52.49 -0.32 1.83 16 9 N -0.40 -9.95 2.80 -108.92 -0.31 -10.25 16 10 C 0.52 12.92 7.30 -12.50 -0.09 12.83 16 11 O -0.58 -15.51 15.77 -13.35 -0.21 -15.72 16 12 C -0.18 -3.83 5.60 -104.73 -0.59 -4.42 16 13 C 0.04 0.76 7.39 -38.44 -0.28 0.48 16 14 C -0.26 -4.45 5.82 -104.99 -0.61 -5.06 16 15 C 0.20 3.11 6.70 -81.88 -0.55 2.57 16 16 N -0.53 -9.27 10.23 -8.79 -0.09 -9.36 16 17 C 0.38 7.40 7.73 -16.50 -0.13 7.27 16 18 O -0.46 -8.63 12.10 -35.97 -0.44 -9.06 16 19 C -0.07 -0.75 5.91 -28.13 -0.17 -0.91 16 20 C -0.11 -0.96 5.89 -26.71 -0.16 -1.11 16 21 C -0.16 -1.67 6.19 -27.27 -0.17 -1.84 16 22 C 0.40 6.36 6.88 -30.26 -0.21 6.16 16 23 O -0.44 -8.67 17.29 5.56 0.10 -8.57 16 24 C 0.12 2.75 5.18 -67.93 -0.35 2.40 16 25 C -0.14 -2.95 8.12 -26.69 -0.22 -3.17 16 26 C -0.22 -4.31 10.46 -26.70 -0.28 -4.59 16 27 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 28 H 0.19 4.45 5.01 -52.49 -0.26 4.19 16 29 H 0.40 5.47 9.06 45.56 0.41 5.88 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 2.52 8.01 -51.92 -0.42 2.10 16 37 H 0.10 2.35 5.30 -51.92 -0.28 2.08 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -31.50 333.20 -8.00 -39.50 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -3.80 Total: 11.72 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.94 Total: 3.03 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.24 Total: -39.96 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.55 Total: -33.35 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.98 Total: 14.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.50 -8.00 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318031616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.716 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds