Wall clock time and date at job start Tue Mar 31 2020 11:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48509 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47031 * 299.99600 * 3 2 1 6 6 H 1.48495 * 109.47465 * 60.00265 * 3 2 1 7 7 C 1.39024 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99967 * 161.10983 * 7 2 1 9 9 N 1.36909 * 119.99906 * 341.09502 * 7 2 1 10 10 C 1.34776 * 119.99385 * 137.39960 * 9 7 2 11 11 O 1.21622 * 119.99851 * 187.35788 * 10 9 7 12 12 C 1.47466 * 120.00509 * 7.36414 * 10 9 7 13 13 C 1.39614 * 120.68341 * 328.10250 * 12 10 9 14 14 C 1.39927 * 118.13922 * 179.97438 * 13 12 10 15 15 C 1.39869 * 119.89424 * 359.81805 * 14 13 12 16 16 N 1.32154 * 119.97266 * 0.34704 * 15 14 13 17 17 C 1.32182 * 122.37710 * 359.75092 * 16 15 14 18 18 O 1.35224 * 119.50318 * 179.97438 * 17 16 15 19 19 C 1.50625 * 121.28560 * 180.66722 * 15 14 13 20 20 C 1.52595 * 111.23373 * 337.10706 * 19 15 14 21 21 C 1.53432 * 109.42293 * 54.85430 * 20 19 15 22 22 C 1.47262 * 119.75452 * 179.79181 * 14 13 12 23 23 O 1.21281 * 121.17183 * 348.61428 * 22 14 13 24 24 C 1.46490 * 120.00445 * 317.40889 * 9 7 2 25 25 C 1.53005 * 117.50060 * 350.64326 * 24 9 7 26 26 C 1.53000 * 117.49777 * 281.98656 * 24 9 7 27 27 H 0.97001 * 119.99881 * 5.05951 * 1 2 3 28 28 H 1.08001 * 120.93274 * 359.95285 * 13 12 10 29 29 H 0.96705 * 114.00044 * 90.00502 * 18 17 16 30 30 H 1.08993 * 109.13913 * 216.64929 * 19 15 14 31 31 H 1.09000 * 109.11763 * 97.54670 * 19 15 14 32 32 H 1.09000 * 109.48199 * 294.85814 * 20 19 15 33 33 H 1.09006 * 109.47348 * 174.84075 * 20 19 15 34 34 H 1.08999 * 109.88104 * 55.41073 * 21 20 19 35 35 H 1.09003 * 109.88400 * 176.49539 * 21 20 19 36 36 H 1.09008 * 115.55546 * 136.31826 * 24 9 7 37 37 H 1.09008 * 117.49394 * 0.02562 * 25 24 9 38 38 H 1.08996 * 117.49899 * 145.01935 * 25 24 9 39 39 H 1.09000 * 117.50177 * 214.98007 * 26 24 9 40 40 H 1.09002 * 117.49722 * 0.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0088 -1.2040 -0.0005 8 1 3.0452 -1.2291 -0.3034 9 7 1.3796 -2.3578 0.3831 10 6 1.5723 -3.4945 -0.3150 11 8 0.9139 -4.4845 -0.0588 12 6 2.5815 -3.5379 -1.3894 13 6 2.8646 -2.4001 -2.1474 14 6 3.8322 -2.5011 -3.1531 15 6 4.4865 -3.7179 -3.3713 16 7 4.1853 -4.7713 -2.6323 17 6 3.2778 -4.7264 -1.6723 18 8 3.0149 -5.8400 -0.9518 19 6 5.5436 -3.8579 -4.4352 20 6 5.3844 -2.7924 -5.5159 21 6 5.3798 -1.4027 -4.8656 22 6 4.1555 -1.3242 -3.9771 23 8 3.4656 -0.3272 -3.9457 24 6 0.4969 -2.3570 1.5522 25 6 0.4873 -1.1033 2.4293 26 6 1.1540 -2.3855 2.9336 27 1 -0.4850 0.8368 -0.0741 28 1 2.3509 -1.4682 -1.9629 29 1 3.5639 -5.9359 -0.1615 30 1 5.4628 -4.8443 -4.8916 31 1 6.5272 -3.7570 -3.9765 32 1 4.4446 -2.9492 -6.0454 33 1 6.2140 -2.8618 -6.2196 34 1 6.2812 -1.2705 -4.2673 35 1 5.3289 -0.6331 -5.6359 36 1 -0.4441 -2.8938 1.4313 37 1 1.1375 -0.2790 2.1361 38 1 -0.4599 -0.8156 2.8855 39 1 0.6453 -2.9409 3.7215 40 1 2.2432 -2.4046 2.9725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318031616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:53 Heat of formation + Delta-G solvation = -54.450979 kcal Electronic energy + Delta-G solvation = -27160.338325 eV Core-core repulsion = 23327.109906 eV Total energy + Delta-G solvation = -3833.228419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19348 -40.68518 -39.93975 -38.37106 -37.79330 -36.27124 -35.21758 -33.88882 -33.05952 -31.05319 -29.52978 -27.31626 -25.51336 -24.95433 -23.39089 -22.95596 -22.60797 -21.50214 -20.58513 -19.76920 -19.01897 -18.31486 -17.77217 -17.07935 -17.05367 -16.65470 -16.37292 -16.05193 -15.80299 -15.68930 -15.14162 -15.01733 -14.86898 -14.53218 -14.27656 -14.09370 -13.89660 -13.43617 -13.19695 -12.95173 -12.90083 -12.77327 -12.74489 -12.19235 -12.13328 -11.96789 -11.94264 -11.64447 -11.23058 -11.13219 -10.83075 -10.70863 -10.55764 -10.34261 -9.90330 -9.37974 -8.40792 -6.17046 -0.72850 -0.11294 1.16683 1.33658 1.38375 1.47588 1.94555 2.15971 2.31452 2.62841 2.69491 2.86270 3.02904 3.30782 3.40738 3.67003 3.75804 3.99677 4.05898 4.12985 4.15282 4.17948 4.29657 4.37762 4.44811 4.59607 4.79420 4.80195 4.81113 4.94916 5.01057 5.04868 5.11035 5.21572 5.24428 5.30977 5.33925 5.43661 5.44548 5.94857 6.28301 6.44073 6.50322 6.68622 6.97601 7.41433 7.86705 8.62618 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.006370 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.585001 B = 4394.639102 C = 6192.439017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.034 3.966 3 Si 0.954 3.046 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.411 5.411 10 C 0.509 3.491 11 O -0.612 6.612 12 C -0.211 4.211 13 C 0.024 3.976 14 C -0.268 4.268 15 C 0.222 3.778 16 N -0.527 5.527 17 C 0.381 3.619 18 O -0.472 6.472 19 C -0.073 4.073 20 C -0.105 4.105 21 C -0.152 4.152 22 C 0.401 3.599 23 O -0.493 6.493 24 C 0.079 3.921 25 C -0.130 4.130 26 C -0.185 4.185 27 H 0.275 0.725 28 H 0.161 0.839 29 H 0.417 0.583 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -1.780 -6.711 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.174 4.174 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.107 0.893 9 N -0.127 5.127 10 C 0.298 3.702 11 O -0.499 6.499 12 C -0.217 4.217 13 C -0.001 4.001 14 C -0.271 4.271 15 C 0.083 3.917 16 N -0.247 5.247 17 C 0.201 3.799 18 O -0.282 6.282 19 C -0.110 4.110 20 C -0.142 4.142 21 C -0.189 4.189 22 C 0.280 3.720 23 O -0.371 6.371 24 C -0.025 4.025 25 C -0.167 4.167 26 C -0.224 4.224 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.279 0.721 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.871 -2.516 -6.962 15.723 hybrid contribution -0.785 1.535 0.993 1.990 sum 13.086 -0.981 -5.968 14.417 Atomic orbital electron populations 1.70062 1.07378 1.28967 1.43426 1.25921 0.95601 1.01767 0.94087 0.85481 0.79623 0.78870 0.78337 1.18343 1.20823 1.18737 1.19476 0.95805 0.84930 1.49673 0.89285 1.42867 1.40146 1.07520 1.22160 1.18217 0.85082 0.84321 0.82556 1.90627 1.51141 1.37175 1.70949 1.21018 1.03691 0.94814 1.02184 1.22998 0.90273 0.98894 0.87921 1.21564 1.03716 0.99132 1.02659 1.22298 0.92100 0.85138 0.92181 1.67188 1.17294 1.32174 1.08025 1.19328 0.87843 0.83757 0.88962 1.84624 1.62837 1.39363 1.41369 1.20725 0.95546 1.02488 0.92205 1.21584 1.05165 0.90209 0.97282 1.22420 0.95718 1.01180 0.99571 1.23310 0.86160 0.83359 0.79155 1.90574 1.51298 1.33492 1.61706 1.21113 0.94423 1.03692 0.83304 1.22894 1.01591 0.91672 1.00566 1.23440 1.00079 1.02076 0.96771 0.91452 0.82181 0.72085 0.87266 0.85650 0.91822 0.85021 0.85129 0.87055 0.90147 0.89105 0.88971 0.87159 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.41 11.46 21.68 0.25 -45.17 16 2 C 0.03 1.69 3.08 84.95 0.26 1.95 16 3 Si 0.95 39.86 29.28 68.60 2.01 41.87 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.37 -18.79 5.69 84.09 0.48 -18.31 16 8 H 0.09 4.44 6.05 -2.91 -0.02 4.42 16 9 N -0.41 -21.26 2.80 -616.77 -1.73 -22.99 16 10 C 0.51 26.69 7.30 86.68 0.63 27.32 16 11 O -0.61 -34.82 15.77 13.69 0.22 -34.60 16 12 C -0.21 -9.62 5.60 -19.93 -0.11 -9.73 16 13 C 0.02 1.06 7.39 23.01 0.17 1.23 16 14 C -0.27 -9.15 5.82 -20.10 -0.12 -9.26 16 15 C 0.22 6.29 6.70 42.88 0.29 6.58 16 16 N -0.53 -17.69 10.23 -294.87 -3.02 -20.71 16 17 C 0.38 15.17 7.73 85.22 0.66 15.82 16 18 O -0.47 -17.95 12.10 -67.27 -0.81 -18.76 16 19 C -0.07 -1.10 5.91 29.69 0.18 -0.93 16 20 C -0.10 -1.20 5.89 30.60 0.18 -1.02 16 21 C -0.15 -2.42 6.19 30.24 0.19 -2.24 16 22 C 0.40 12.15 6.88 28.31 0.19 12.34 16 23 O -0.49 -19.50 17.29 -3.03 -0.05 -19.55 16 24 C 0.08 3.86 5.18 44.99 0.23 4.10 16 25 C -0.13 -5.56 8.12 30.62 0.25 -5.31 16 26 C -0.19 -7.29 10.46 30.62 0.32 -6.96 16 27 H 0.28 13.66 8.32 -92.71 -0.77 12.88 16 28 H 0.16 7.97 5.01 -2.91 -0.01 7.96 16 29 H 0.42 11.57 9.06 -74.05 -0.67 10.90 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 4.19 8.01 -2.38 -0.02 4.17 16 37 H 0.09 4.16 5.30 -2.38 -0.01 4.14 16 38 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -74.33 333.20 1.10 -73.22 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.44 Total: 31.12 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 3.80 Total: 15.56 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -4.50 Total: -88.86 kcal Atomic # 8 Polarization: -72.27 SS G_CDS: -0.65 Total: -72.92 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.01 Total: 41.87 kcal Total: -74.33 1.10 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318031616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.774 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds