Wall clock time and date at job start Tue Mar 31 2020 10:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48508 * 109.47255 * 150.00346 * 3 2 1 7 7 C 1.37875 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00214 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46709 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00065 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99599 * 359.97438 * 13 12 11 15 15 C 1.49328 * 119.99982 * 180.02562 * 13 12 11 16 16 O 1.21403 * 119.99973 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99582 * 180.27489 * 15 13 12 18 18 C 1.40487 * 119.99751 * 179.72617 * 17 15 13 19 19 C 1.40334 * 126.11162 * 359.67831 * 18 17 15 20 20 N 1.30834 * 108.20908 * 179.88304 * 19 18 17 21 21 N 1.40058 * 108.36116 * 0.38394 * 20 19 18 22 22 C 1.46496 * 125.99570 * 179.73013 * 21 20 19 23 23 F 1.39904 * 109.46911 * 30.02829 * 22 21 20 24 24 F 1.39896 * 109.47143 * 150.02285 * 22 21 20 25 25 C 1.35224 * 108.01215 * 359.75509 * 21 20 19 26 26 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46601 * 59.99934 * 9 7 2 28 28 H 1.08998 * 109.47035 * 300.00442 * 9 7 2 29 29 H 1.08995 * 109.47349 * 60.00725 * 10 9 7 30 30 H 1.08993 * 109.47590 * 299.99760 * 10 9 7 31 31 H 1.08995 * 109.46784 * 60.00182 * 11 10 9 32 32 H 1.08992 * 109.47177 * 299.99779 * 11 10 9 33 33 H 0.97000 * 120.00380 * 359.97438 * 12 11 10 34 34 H 0.97001 * 120.00485 * 359.71509 * 17 15 13 35 35 H 1.07997 * 125.90145 * 0.04743 * 19 18 17 36 36 H 1.08996 * 109.47328 * 270.03176 * 22 21 20 37 37 H 1.08000 * 126.18047 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5517 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 6 7.3651 -4.2638 -0.0010 14 8 8.1537 -3.3413 -0.0006 15 6 7.8629 -5.6717 -0.0020 16 8 7.0740 -6.5945 -0.0029 17 7 9.1880 -5.9179 0.0040 18 6 9.6563 -7.2424 0.0088 19 6 8.8631 -8.4001 0.0143 20 7 9.6573 -9.4398 0.0151 21 7 10.9815 -8.9835 0.0190 22 6 12.1816 -9.8236 0.0266 23 9 11.9114 -11.0287 -0.6307 24 9 13.2215 -9.1572 -0.6303 25 6 10.9579 -7.6315 0.0151 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 3.6580 -3.1505 -0.8907 30 1 3.6587 -3.1501 0.8892 31 1 5.9149 -2.1225 0.8890 32 1 5.9150 -2.1227 -0.8909 33 1 5.4098 -4.7549 -0.0014 34 1 9.8183 -5.1806 0.0049 35 1 7.7835 -8.4281 0.0149 36 1 12.4748 -10.0291 1.0561 37 1 11.8183 -6.9788 0.0162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320569517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:10 Heat of formation + Delta-G solvation = -81.504352 kcal Electronic energy + Delta-G solvation = -24559.206691 eV Core-core repulsion = 20202.868371 eV Total energy + Delta-G solvation = -4356.338320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.91047 -48.02499 -42.01724 -40.64387 -38.72168 -36.09269 -35.21621 -33.38031 -32.87732 -31.53571 -30.10891 -27.81714 -26.55246 -24.88226 -22.89211 -22.31393 -21.48591 -20.83323 -20.18133 -18.93344 -18.69041 -18.58825 -18.01335 -16.93448 -16.72981 -16.32472 -16.22289 -15.58666 -15.39432 -15.11869 -14.80450 -14.77676 -14.37546 -14.30207 -14.08093 -13.86151 -13.74180 -13.46632 -12.86728 -12.75399 -12.15069 -12.01681 -11.82334 -11.51644 -11.49154 -11.15837 -10.95113 -10.25295 -10.23465 -10.03595 -9.83358 -9.64613 -9.26855 -9.17948 -8.58499 -8.45944 -6.08750 -4.07979 0.79687 1.16482 1.33467 2.08104 2.26590 2.88199 3.07113 3.28546 3.32588 3.36526 3.39286 3.51297 3.83697 4.04598 4.26921 4.41339 4.49841 4.84249 4.94642 5.24813 5.36933 5.47850 5.51001 5.87402 5.93678 6.05265 6.21022 6.34025 6.46102 6.64234 6.69939 6.93094 7.16072 7.19391 7.29887 7.47806 7.72019 7.82908 8.47218 8.95244 9.52900 11.04393 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.049148 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.571169 B =15526.097439 C =16030.912165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.111 3.889 12 N -0.687 5.687 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.512 3.488 16 O -0.506 6.506 17 N -0.617 5.617 18 C 0.014 3.986 19 C 0.072 3.928 20 N -0.261 5.261 21 N -0.437 5.437 22 C 0.518 3.482 23 F -0.172 7.172 24 F -0.181 7.181 25 C 0.037 3.963 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.425 0.575 35 H 0.217 0.783 36 H 0.158 0.842 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.701 -18.262 1.609 33.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.011 4.011 12 N -0.339 5.339 13 C 0.286 3.714 14 O -0.401 6.401 15 C 0.294 3.706 16 O -0.379 6.379 17 N -0.264 5.264 18 C -0.090 4.090 19 C -0.117 4.117 20 N -0.081 5.081 21 N -0.232 5.232 22 C 0.385 3.615 23 F -0.153 7.153 24 F -0.163 7.163 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.263 0.737 35 H 0.233 0.767 36 H 0.174 0.826 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 27.732 -19.449 1.575 33.909 hybrid contribution 0.438 1.869 -0.238 1.934 sum 28.170 -17.580 1.337 33.233 Atomic orbital electron populations 1.69911 1.06317 1.26982 1.50813 1.25034 0.94757 0.99237 0.94462 0.86775 0.80365 0.83553 0.78569 1.20246 1.21362 1.18921 1.21084 0.89233 0.94584 1.51253 0.90917 1.19505 0.97402 0.91206 0.96729 1.21751 0.90005 1.01341 1.02265 1.21891 0.96771 0.79806 1.02627 1.46007 1.05843 1.11346 1.70699 1.19652 0.84168 0.88248 0.79301 1.90784 1.55217 1.45171 1.48908 1.20390 0.82271 0.90463 0.77433 1.90665 1.55042 1.45394 1.46847 1.42432 1.07462 1.05753 1.70718 1.17757 0.91748 0.85527 1.14011 1.24836 1.01771 0.87281 0.97845 1.77599 0.84677 1.22672 1.23105 1.49453 1.06577 1.05108 1.62032 1.21240 0.73547 0.73118 0.93632 1.93143 1.93469 1.44712 1.83959 1.93136 1.57343 1.81324 1.84455 1.21760 0.97991 0.84841 1.06117 0.92661 0.96228 0.96657 0.91739 0.91720 0.90937 0.90951 0.74974 0.73711 0.76673 0.82579 0.79493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.03 5.27 -26.73 -0.14 -2.18 16 11 C 0.11 1.65 5.67 -4.04 -0.02 1.63 16 12 N -0.69 -8.82 5.55 -60.77 -0.34 -9.15 16 13 C 0.51 6.41 7.89 -11.64 -0.09 6.32 16 14 O -0.52 -7.61 16.48 5.49 0.09 -7.52 16 15 C 0.51 5.67 7.86 -11.64 -0.09 5.58 16 16 O -0.51 -6.23 13.63 5.45 0.07 -6.16 16 17 N -0.62 -5.39 5.46 -10.48 -0.06 -5.45 16 18 C 0.01 0.12 6.90 -83.96 -0.58 -0.45 16 19 C 0.07 0.75 10.84 -17.19 -0.19 0.56 16 20 N -0.26 -2.74 12.39 30.72 0.38 -2.36 16 21 N -0.44 -3.38 3.98 -66.45 -0.26 -3.65 16 22 C 0.52 2.50 6.63 59.84 0.40 2.90 16 23 F -0.17 -1.27 17.36 2.25 0.04 -1.23 16 24 F -0.18 -0.93 17.01 2.25 0.04 -0.89 16 25 C 0.04 0.25 11.09 -16.91 -0.19 0.06 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.44 7.20 -51.92 -0.37 0.06 16 28 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.41 4.79 7.94 -40.82 -0.32 4.47 16 34 H 0.43 2.90 8.29 -40.82 -0.34 2.56 16 35 H 0.22 2.30 5.92 -52.49 -0.31 1.98 16 36 H 0.16 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.19 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -34.05 337.34 -4.16 -38.21 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.86 Total: 2.04 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.45 Total: 1.11 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.50 Total: -47.21 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.16 Total: -13.68 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.08 Total: -2.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.05 -4.16 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320569517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.293 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds