Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48508 * 109.47255 * 150.00346 * 3 2 1 7 7 C 1.37875 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00214 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.46709 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00065 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99599 * 359.97438 * 13 12 11 15 15 C 1.49328 * 119.99982 * 180.02562 * 13 12 11 16 16 O 1.21403 * 119.99973 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99582 * 180.27489 * 15 13 12 18 18 C 1.40487 * 119.99751 * 179.72617 * 17 15 13 19 19 C 1.40334 * 126.11162 * 359.67831 * 18 17 15 20 20 N 1.30834 * 108.20908 * 179.88304 * 19 18 17 21 21 N 1.40058 * 108.36116 * 0.38394 * 20 19 18 22 22 C 1.46496 * 125.99570 * 179.73013 * 21 20 19 23 23 F 1.39904 * 109.46911 * 30.02829 * 22 21 20 24 24 F 1.39896 * 109.47143 * 150.02285 * 22 21 20 25 25 C 1.35224 * 108.01215 * 359.75509 * 21 20 19 26 26 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46601 * 59.99934 * 9 7 2 28 28 H 1.08998 * 109.47035 * 300.00442 * 9 7 2 29 29 H 1.08995 * 109.47349 * 60.00725 * 10 9 7 30 30 H 1.08993 * 109.47590 * 299.99760 * 10 9 7 31 31 H 1.08995 * 109.46784 * 60.00182 * 11 10 9 32 32 H 1.08992 * 109.47177 * 299.99779 * 11 10 9 33 33 H 0.97000 * 120.00380 * 359.97438 * 12 11 10 34 34 H 0.97001 * 120.00485 * 359.71509 * 17 15 13 35 35 H 1.07997 * 125.90145 * 0.04743 * 19 18 17 36 36 H 1.08996 * 109.47328 * 270.03176 * 22 21 20 37 37 H 1.08000 * 126.18047 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5517 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 6 7.3651 -4.2638 -0.0010 14 8 8.1537 -3.3413 -0.0006 15 6 7.8629 -5.6717 -0.0020 16 8 7.0740 -6.5945 -0.0029 17 7 9.1880 -5.9179 0.0040 18 6 9.6563 -7.2424 0.0088 19 6 8.8631 -8.4001 0.0143 20 7 9.6573 -9.4398 0.0151 21 7 10.9815 -8.9835 0.0190 22 6 12.1816 -9.8236 0.0266 23 9 11.9114 -11.0287 -0.6307 24 9 13.2215 -9.1572 -0.6303 25 6 10.9579 -7.6315 0.0151 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 3.6580 -3.1505 -0.8907 30 1 3.6587 -3.1501 0.8892 31 1 5.9149 -2.1225 0.8890 32 1 5.9150 -2.1227 -0.8909 33 1 5.4098 -4.7549 -0.0014 34 1 9.8183 -5.1806 0.0049 35 1 7.7835 -8.4281 0.0149 36 1 12.4748 -10.0291 1.0561 37 1 11.8183 -6.9788 0.0162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320569517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = -108.105172 kcal Electronic energy + Delta-G solvation = -24560.360189 eV Core-core repulsion = 20202.868371 eV Total energy + Delta-G solvation = -4357.491818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.32155 -48.45516 -42.69489 -41.53683 -39.67002 -37.25469 -36.16645 -35.10094 -33.48866 -33.28736 -30.77801 -29.32710 -27.24790 -25.95773 -24.22394 -23.01984 -22.31155 -22.15404 -21.21564 -19.64895 -19.44252 -19.05980 -18.86857 -18.47954 -17.72000 -17.27216 -16.96294 -16.63629 -16.33083 -16.15274 -15.79888 -15.73186 -15.22524 -15.04500 -14.90993 -14.79716 -14.76239 -14.53755 -14.07304 -13.79871 -13.62060 -13.29195 -12.83320 -12.71213 -12.65883 -12.21701 -12.16383 -11.88076 -11.76191 -11.58173 -11.31387 -10.89585 -10.77210 -10.73866 -10.27993 -9.11676 -8.26838 -6.31265 0.03707 0.52916 0.72114 1.23300 1.39953 1.41529 1.51403 1.53175 2.18294 2.38917 2.50782 2.60429 2.98509 3.09030 3.31442 3.57897 3.61775 3.89172 4.04362 4.20958 4.25636 4.32888 4.50874 4.77068 4.84406 4.89544 5.04258 5.18740 5.34476 5.49259 5.54854 5.58174 5.66930 5.84709 6.20719 6.29769 6.34279 6.65900 6.77475 6.85850 7.33499 8.89669 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.049148 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.571169 B =15526.097439 C =16030.912165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.106 4.106 11 C 0.124 3.876 12 N -0.686 5.686 13 C 0.512 3.488 14 O -0.541 6.541 15 C 0.514 3.486 16 O -0.523 6.523 17 N -0.599 5.599 18 C -0.014 4.014 19 C 0.059 3.941 20 N -0.292 5.292 21 N -0.438 5.438 22 C 0.513 3.487 23 F -0.190 7.190 24 F -0.181 7.181 25 C 0.067 3.933 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.420 0.580 34 H 0.435 0.565 35 H 0.205 0.795 36 H 0.208 0.792 37 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.240 -17.796 1.924 36.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.002 3.998 12 N -0.338 5.338 13 C 0.292 3.708 14 O -0.419 6.419 15 C 0.296 3.704 16 O -0.399 6.399 17 N -0.247 5.247 18 C -0.118 4.118 19 C -0.130 4.130 20 N -0.113 5.113 21 N -0.232 5.232 22 C 0.381 3.619 23 F -0.171 7.171 24 F -0.163 7.163 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.257 0.743 34 H 0.275 0.725 35 H 0.221 0.779 36 H 0.224 0.776 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 31.320 -19.025 1.888 36.694 hybrid contribution -0.612 1.593 -0.350 1.742 sum 30.708 -17.431 1.538 35.344 Atomic orbital electron populations 1.70075 1.08378 1.28116 1.52744 1.26048 0.95621 1.03664 0.94222 0.85651 0.79636 0.78138 0.79184 1.19256 1.21344 1.16520 1.21496 0.92156 0.93153 1.50248 0.94758 1.19467 0.93839 0.94421 0.97217 1.21527 0.92136 0.98388 1.02298 1.21567 0.94434 0.80938 1.02904 1.45862 1.06335 1.10756 1.70838 1.19827 0.83689 0.88792 0.78451 1.90773 1.55550 1.45893 1.49696 1.20026 0.83013 0.89372 0.77980 1.90677 1.55660 1.45442 1.48138 1.42237 1.06716 1.06250 1.69475 1.17864 0.92516 0.84977 1.16414 1.24740 1.01644 0.88212 0.98397 1.77543 0.86074 1.23166 1.24493 1.49829 1.06540 1.05937 1.60849 1.22110 0.72450 0.71922 0.95448 1.93108 1.93569 1.45838 1.84576 1.93138 1.57043 1.81282 1.84799 1.22380 0.98265 0.84780 1.02448 0.92588 0.95577 0.95741 0.91827 0.91782 0.90685 0.90706 0.74289 0.72491 0.77892 0.77594 0.75488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 7 C -0.53 -29.79 9.66 25.60 0.25 -29.54 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.11 -3.62 5.27 30.60 0.16 -3.46 16 11 C 0.12 3.48 5.67 86.38 0.49 3.97 16 12 N -0.69 -16.73 5.55 -464.53 -2.58 -19.31 16 13 C 0.51 12.23 7.89 87.23 0.69 12.92 16 14 O -0.54 -14.72 16.48 -3.29 -0.05 -14.78 16 15 C 0.51 10.88 7.86 87.23 0.69 11.56 16 16 O -0.52 -12.82 13.63 -3.41 -0.05 -12.86 16 17 N -0.60 -9.47 5.46 -305.41 -1.67 -11.14 16 18 C -0.01 -0.22 6.90 37.71 0.26 0.04 16 19 C 0.06 1.21 10.84 85.35 0.93 2.13 16 20 N -0.29 -5.94 12.39 -56.72 -0.70 -6.64 16 21 N -0.44 -5.76 3.98 -364.14 -1.45 -7.21 16 22 C 0.51 3.50 6.63 127.77 0.85 4.35 16 23 F -0.19 -2.52 17.36 44.97 0.78 -1.74 16 24 F -0.18 -1.31 17.01 44.97 0.77 -0.54 16 25 C 0.07 0.69 11.09 83.62 0.93 1.62 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 28 H 0.02 1.02 7.57 -2.39 -0.02 1.01 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.42 9.38 7.94 -92.71 -0.74 8.65 16 34 H 0.44 4.92 8.29 -92.71 -0.77 4.15 16 35 H 0.20 4.53 5.92 -2.91 -0.02 4.52 16 36 H 0.21 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.23 0.32 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -75.37 337.34 2.64 -72.73 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -0.41 Total: 11.60 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.82 Total: 3.73 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -6.10 Total: -103.29 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.10 Total: -27.64 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 1.55 Total: -2.28 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -75.37 2.64 -72.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320569517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.375 kcal (2) G-P(sol) polarization free energy of solvation -75.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds