Wall clock time and date at job start Tue Mar 31 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46492 * 120.00290 * 2 1 4 4 C 1.50696 * 109.47669 * 270.00057 * 3 2 1 5 5 H 1.08003 * 119.99499 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00584 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99954 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00271 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46837 * 119.99971 * 8 6 4 11 11 H 1.48497 * 109.46912 * 239.99940 * 8 6 4 12 12 C 1.34781 * 119.99895 * 180.02562 * 2 1 3 13 13 O 1.21352 * 120.00099 * 183.62814 * 12 2 1 14 14 C 1.49351 * 119.99830 * 3.62141 * 12 2 1 15 15 O 1.21386 * 120.00122 * 354.17727 * 14 12 2 16 16 N 1.34774 * 119.99613 * 174.16769 * 14 12 2 17 17 C 1.39935 * 119.99458 * 180.02562 * 16 14 12 18 18 C 1.40459 * 125.98144 * 0.02562 * 17 16 14 19 19 C 1.35223 * 107.86393 * 179.97438 * 18 17 16 20 20 N 1.34985 * 107.87560 * 359.97438 * 19 18 17 21 21 C 1.46497 * 125.96932 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47068 * 125.02778 * 21 20 19 23 23 F 1.39896 * 109.47308 * 175.00124 * 22 21 20 24 24 F 1.39901 * 109.46801 * 295.00389 * 22 21 20 25 25 N 1.31272 * 125.97561 * 179.97438 * 17 16 14 26 26 H 1.09002 * 109.47653 * 263.99523 * 1 2 3 27 27 H 1.09009 * 109.46990 * 23.99316 * 1 2 3 28 28 H 1.09001 * 109.47439 * 143.99499 * 1 2 3 29 29 H 1.08998 * 109.47109 * 30.00136 * 3 2 1 30 30 H 1.09005 * 109.47155 * 149.99723 * 3 2 1 31 31 H 0.97000 * 120.00281 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00210 * 0.02562 * 16 14 12 33 33 H 1.07999 * 126.06807 * 359.97438 * 18 17 16 34 34 H 1.07997 * 126.05994 * 180.02562 * 19 18 17 35 35 H 1.08992 * 109.47656 * 245.02716 * 21 20 19 36 36 H 1.08999 * 109.47386 * 5.03481 * 21 20 19 37 37 H 1.09004 * 109.46843 * 54.99955 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2416 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6185 -0.6730 8 14 3.4381 3.4168 -3.4338 9 1 2.8610 2.4164 -4.3672 10 1 2.8000 4.7372 -3.6678 11 1 4.9007 3.5256 -3.6664 12 6 2.1388 -1.1673 -0.0005 13 8 3.3505 -1.1684 0.0660 14 6 1.3942 -2.4593 -0.0828 15 8 0.1811 -2.4643 -0.0426 16 7 2.0694 -3.6196 -0.2019 17 6 1.3717 -4.8302 -0.2795 18 6 -0.0243 -4.9817 -0.2462 19 6 -0.3008 -6.3015 -0.3473 20 7 0.8712 -6.9643 -0.4418 21 6 1.0316 -8.4150 -0.5679 22 6 1.8705 -8.7295 -1.8083 23 9 2.1197 -10.1049 -1.8663 24 9 1.1741 -8.3330 -2.9550 25 7 1.9074 -6.0228 -0.3971 26 1 -0.3634 -0.1075 1.0220 27 1 -0.3633 0.9390 -0.4179 28 1 -0.3634 -0.8313 -0.6041 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0294 4.4444 -0.8502 32 1 3.0389 -3.6156 -0.2338 33 1 -0.7483 -4.1854 -0.1559 34 1 -1.2850 -6.7462 -0.3525 35 1 1.5335 -8.8036 0.3181 36 1 0.0514 -8.8819 -0.6644 37 1 2.8165 -8.1908 -1.7532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321271903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:56 Heat of formation + Delta-G solvation = -63.878859 kcal Electronic energy + Delta-G solvation = -25646.615270 eV Core-core repulsion = 21291.041249 eV Total energy + Delta-G solvation = -4355.574021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.46029 -47.46360 -41.66398 -40.27748 -38.06559 -35.89251 -34.77202 -33.32724 -32.60747 -30.41609 -28.71594 -28.04014 -26.33322 -24.92529 -23.71729 -22.59393 -21.73496 -20.49774 -19.43141 -18.30262 -17.96913 -17.40812 -17.28329 -16.89974 -16.66054 -16.22433 -15.80304 -15.44725 -15.10199 -14.83053 -14.40200 -14.36384 -14.09080 -13.83930 -13.79084 -13.34963 -13.20876 -13.06860 -12.91476 -12.45966 -12.15548 -12.01110 -11.76914 -11.34178 -11.06854 -11.01063 -10.93290 -10.75281 -10.54605 -10.23922 -9.69209 -9.11957 -8.88796 -8.52312 -8.51255 -7.84269 -6.12733 -4.18478 1.28259 1.67802 1.82644 2.64657 2.76853 3.10642 3.26830 3.34494 3.38976 3.68216 3.73979 3.86707 3.92306 4.19385 4.37908 4.47531 4.53628 4.69876 4.79225 5.10604 5.22360 5.38923 5.53162 5.84671 5.97377 6.09477 6.41342 6.56892 6.69904 6.72366 6.86715 7.23787 7.31797 7.54120 7.77796 7.85198 8.09428 8.12983 8.54969 8.86477 9.46992 10.95497 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.002583 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.301743 B =10836.911450 C =11434.780225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.558 5.558 3 C 0.240 3.760 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.500 3.500 13 O -0.522 6.522 14 C 0.520 3.480 15 O -0.494 6.494 16 N -0.615 5.615 17 C 0.315 3.685 18 C -0.259 4.259 19 C 0.072 3.928 20 N -0.379 5.379 21 C 0.098 3.902 22 C 0.252 3.748 23 F -0.198 7.198 24 F -0.198 7.198 25 N -0.324 5.324 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.428 0.572 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 -23.580 1.955 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.290 5.290 3 C 0.122 3.878 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.279 3.721 13 O -0.399 6.399 14 C 0.303 3.697 15 O -0.366 6.366 16 N -0.265 5.265 17 C 0.058 3.942 18 C -0.289 4.289 19 C -0.072 4.072 20 N -0.163 5.163 21 C -0.025 4.025 22 C 0.197 3.803 23 F -0.179 7.179 24 F -0.179 7.179 25 N -0.154 5.154 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.267 0.733 33 H 0.195 0.805 34 H 0.198 0.802 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.526 -24.082 1.948 25.306 hybrid contribution -0.125 0.663 -1.013 1.217 sum -7.651 -23.419 0.936 24.655 Atomic orbital electron populations 1.22253 0.79431 1.04086 1.01848 1.48118 1.07722 1.06609 1.66520 1.19564 0.92874 0.77188 0.98162 1.21419 1.37039 1.06681 0.91902 0.92140 1.24931 0.95134 0.96214 0.97687 1.69938 1.38069 1.14296 1.30781 0.86393 0.78116 0.78416 0.84239 1.19703 1.20851 1.20777 1.19305 0.87438 0.84082 0.81235 1.90757 1.12949 1.86462 1.49747 1.21021 0.87684 0.85057 0.75927 1.90566 1.13657 1.86201 1.46179 1.42465 1.11782 1.01890 1.70409 1.19157 0.91406 0.85858 0.97731 1.21974 0.94598 0.96644 1.15681 1.22635 0.91352 0.92460 1.00769 1.47719 1.04040 1.04815 1.59769 1.22572 1.04091 0.77196 0.98681 1.22180 0.97289 0.77627 0.83188 1.93014 1.95132 1.33156 1.96639 1.93033 1.81454 1.90458 1.52970 1.77346 1.10332 0.96178 1.31573 0.93121 0.90995 0.88916 0.94005 0.93209 0.92584 0.73337 0.80453 0.80232 0.86616 0.86128 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.55 59.84 0.57 1.72 16 2 N -0.56 -11.87 2.86 -183.51 -0.52 -12.40 16 3 C 0.24 6.11 5.16 -5.20 -0.03 6.08 16 4 C -0.53 -14.69 9.38 -34.45 -0.32 -15.01 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.50 10.23 7.73 -11.63 -0.09 10.14 16 13 O -0.52 -12.05 16.05 5.49 0.09 -11.96 16 14 C 0.52 8.77 7.74 -11.63 -0.09 8.68 16 15 O -0.49 -8.11 10.26 5.47 0.06 -8.06 16 16 N -0.62 -9.16 5.43 -11.58 -0.06 -9.22 16 17 C 0.32 4.39 8.10 -154.55 -1.25 3.14 16 18 C -0.26 -3.20 9.60 -39.82 -0.38 -3.58 16 19 C 0.07 0.65 11.43 -17.24 -0.20 0.45 16 20 N -0.38 -3.58 3.66 -61.38 -0.22 -3.81 16 21 C 0.10 0.54 6.70 -4.04 -0.03 0.52 16 22 C 0.25 1.80 5.42 37.16 0.20 2.01 16 23 F -0.20 -1.50 17.34 2.25 0.04 -1.46 16 24 F -0.20 -1.98 17.32 2.25 0.04 -1.94 16 25 N -0.32 -4.11 12.36 31.41 0.39 -3.72 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.22 8.03 -51.92 -0.42 0.80 16 28 H 0.09 1.53 5.35 -51.94 -0.28 1.25 16 29 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 30 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.43 6.04 8.31 -40.82 -0.34 5.70 16 33 H 0.18 2.30 5.91 -52.49 -0.31 1.99 16 34 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 0.35 8.07 -51.93 -0.42 -0.07 16 37 H 0.12 0.87 8.05 -51.93 -0.42 0.46 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -33.20 335.32 -4.94 -38.14 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.80 Total: 2.27 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: -1.71 Total: 15.80 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.31 Total: -54.23 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.14 Total: -20.02 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.20 -4.94 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321271903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.740 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds