Wall clock time and date at job start Tue Mar 31 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46492 * 120.00290 * 2 1 4 4 C 1.50696 * 109.47669 * 270.00057 * 3 2 1 5 5 H 1.08003 * 119.99499 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00584 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99954 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00271 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.46907 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46837 * 119.99971 * 8 6 4 11 11 H 1.48497 * 109.46912 * 239.99940 * 8 6 4 12 12 C 1.34781 * 119.99895 * 180.02562 * 2 1 3 13 13 O 1.21352 * 120.00099 * 183.62814 * 12 2 1 14 14 C 1.49351 * 119.99830 * 3.62141 * 12 2 1 15 15 O 1.21386 * 120.00122 * 354.17727 * 14 12 2 16 16 N 1.34774 * 119.99613 * 174.16769 * 14 12 2 17 17 C 1.39935 * 119.99458 * 180.02562 * 16 14 12 18 18 C 1.40459 * 125.98144 * 0.02562 * 17 16 14 19 19 C 1.35223 * 107.86393 * 179.97438 * 18 17 16 20 20 N 1.34985 * 107.87560 * 359.97438 * 19 18 17 21 21 C 1.46497 * 125.96932 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47068 * 125.02778 * 21 20 19 23 23 F 1.39896 * 109.47308 * 175.00124 * 22 21 20 24 24 F 1.39901 * 109.46801 * 295.00389 * 22 21 20 25 25 N 1.31272 * 125.97561 * 179.97438 * 17 16 14 26 26 H 1.09002 * 109.47653 * 263.99523 * 1 2 3 27 27 H 1.09009 * 109.46990 * 23.99316 * 1 2 3 28 28 H 1.09001 * 109.47439 * 143.99499 * 1 2 3 29 29 H 1.08998 * 109.47109 * 30.00136 * 3 2 1 30 30 H 1.09005 * 109.47155 * 149.99723 * 3 2 1 31 31 H 0.97000 * 120.00281 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00210 * 0.02562 * 16 14 12 33 33 H 1.07999 * 126.06807 * 359.97438 * 18 17 16 34 34 H 1.07997 * 126.05994 * 180.02562 * 19 18 17 35 35 H 1.08992 * 109.47656 * 245.02716 * 21 20 19 36 36 H 1.08999 * 109.47386 * 5.03481 * 21 20 19 37 37 H 1.09004 * 109.46843 * 54.99955 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2416 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6185 -0.6730 8 14 3.4381 3.4168 -3.4338 9 1 2.8610 2.4164 -4.3672 10 1 2.8000 4.7372 -3.6678 11 1 4.9007 3.5256 -3.6664 12 6 2.1388 -1.1673 -0.0005 13 8 3.3505 -1.1684 0.0660 14 6 1.3942 -2.4593 -0.0828 15 8 0.1811 -2.4643 -0.0426 16 7 2.0694 -3.6196 -0.2019 17 6 1.3717 -4.8302 -0.2795 18 6 -0.0243 -4.9817 -0.2462 19 6 -0.3008 -6.3015 -0.3473 20 7 0.8712 -6.9643 -0.4418 21 6 1.0316 -8.4150 -0.5679 22 6 1.8705 -8.7295 -1.8083 23 9 2.1197 -10.1049 -1.8663 24 9 1.1741 -8.3330 -2.9550 25 7 1.9074 -6.0228 -0.3971 26 1 -0.3634 -0.1075 1.0220 27 1 -0.3633 0.9390 -0.4179 28 1 -0.3634 -0.8313 -0.6041 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0294 4.4444 -0.8502 32 1 3.0389 -3.6156 -0.2338 33 1 -0.7483 -4.1854 -0.1559 34 1 -1.2850 -6.7462 -0.3525 35 1 1.5335 -8.8036 0.3181 36 1 0.0514 -8.8819 -0.6644 37 1 2.8165 -8.1908 -1.7532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321271903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:56 Heat of formation + Delta-G solvation = -86.549189 kcal Electronic energy + Delta-G solvation = -25647.598330 eV Core-core repulsion = 21291.041249 eV Total energy + Delta-G solvation = -4356.557080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07756 -48.09693 -42.62847 -41.60630 -39.58476 -37.31275 -36.14230 -34.69028 -34.13383 -31.27297 -30.15376 -29.35119 -27.78839 -26.50242 -24.81520 -23.87091 -22.69000 -21.57605 -20.78221 -19.00414 -18.75953 -18.72593 -18.57973 -18.05646 -17.97661 -17.35021 -17.20760 -16.82926 -16.49349 -16.11363 -15.83893 -15.15831 -15.00350 -14.99569 -14.69479 -14.45926 -14.24930 -14.06322 -13.98607 -13.82854 -13.61895 -13.47807 -13.20599 -12.93022 -12.63503 -12.47931 -12.25460 -12.15975 -11.96501 -11.76534 -11.68336 -10.65869 -10.39647 -10.01158 -9.63422 -9.40928 -8.25080 -6.39711 0.06008 0.75329 0.84434 1.39200 1.40801 1.51925 1.57154 1.69865 2.23031 2.36883 2.48186 2.62786 3.05785 3.20434 3.21411 3.44131 3.62884 3.84566 3.97455 4.33588 4.40671 4.43133 4.49655 4.71526 4.73594 4.80555 4.91569 5.13967 5.17763 5.42712 5.53520 5.68520 5.77244 5.95410 5.98592 6.28246 6.56879 6.63470 6.68013 6.94494 7.30954 8.82870 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.002583 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.301743 B =10836.911450 C =11434.780225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.568 5.568 3 C 0.254 3.746 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.924 5.924 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.494 3.506 13 O -0.557 6.557 14 C 0.533 3.467 15 O -0.489 6.489 16 N -0.608 5.608 17 C 0.287 3.713 18 C -0.290 4.290 19 C 0.098 3.902 20 N -0.371 5.371 21 C 0.095 3.905 22 C 0.251 3.749 23 F -0.199 7.199 24 F -0.215 7.215 25 N -0.342 5.342 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.014 0.986 31 H 0.269 0.731 32 H 0.429 0.571 33 H 0.169 0.831 34 H 0.230 0.770 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -25.787 1.287 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.298 5.298 3 C 0.134 3.866 4 C -0.586 4.586 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.793 3.207 9 H -0.193 1.193 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.275 3.725 13 O -0.437 6.437 14 C 0.314 3.686 15 O -0.361 6.361 16 N -0.258 5.258 17 C 0.032 3.968 18 C -0.320 4.320 19 C -0.047 4.047 20 N -0.155 5.155 21 C -0.027 4.027 22 C 0.196 3.804 23 F -0.181 7.181 24 F -0.197 7.197 25 N -0.172 5.172 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.267 0.733 33 H 0.186 0.814 34 H 0.246 0.754 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.252 -26.338 1.283 27.945 hybrid contribution 0.398 1.162 -0.769 1.449 sum -8.854 -25.176 0.514 26.693 Atomic orbital electron populations 1.22421 0.76860 1.04554 1.03425 1.48093 1.09243 1.05730 1.66756 1.19089 0.91715 0.78993 0.96838 1.21662 1.37356 1.06962 0.92623 0.92677 1.25806 0.94708 0.96221 1.01974 1.70040 1.38593 1.14779 1.32938 0.85351 0.77957 0.78385 0.79031 1.19255 1.19485 1.20539 1.19911 0.87271 0.85261 0.80012 1.90724 1.14641 1.87292 1.51005 1.20000 0.87319 0.84300 0.76982 1.90565 1.13009 1.86039 1.46506 1.42207 1.11787 1.02062 1.69700 1.19310 0.92188 0.85549 0.99741 1.22013 0.93635 0.98228 1.18119 1.23267 0.92808 0.91259 0.97346 1.48063 1.03595 1.05866 1.57965 1.22964 1.06284 0.74918 0.98484 1.22277 0.97495 0.77400 0.83203 1.93011 1.95176 1.33250 1.96647 1.93001 1.81786 1.90658 1.54223 1.77272 1.12030 0.96281 1.31664 0.91049 0.90973 0.87834 0.94548 0.96767 0.92193 0.73296 0.81397 0.75414 0.84304 0.82422 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.34 9.55 127.77 1.22 3.56 16 2 N -0.57 -24.70 2.86 -852.87 -2.44 -27.13 16 3 C 0.25 13.39 5.16 85.63 0.44 13.83 16 4 C -0.55 -30.90 9.38 25.60 0.24 -30.66 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.71 5.46 84.65 0.46 1.17 16 7 N -0.92 -54.42 13.29 21.44 0.28 -54.13 16 8 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.49 20.82 7.73 87.24 0.67 21.50 16 13 O -0.56 -26.90 16.05 -3.25 -0.05 -26.96 16 14 C 0.53 18.08 7.74 87.24 0.68 18.75 16 15 O -0.49 -15.76 10.26 -3.36 -0.03 -15.79 16 16 N -0.61 -18.29 5.43 -308.89 -1.68 -19.97 16 17 C 0.29 7.78 8.10 133.40 1.08 8.86 16 18 C -0.29 -6.66 9.60 22.12 0.21 -6.44 16 19 C 0.10 1.42 11.43 83.51 0.95 2.38 16 20 N -0.37 -5.85 3.66 -348.12 -1.27 -7.12 16 21 C 0.10 0.69 6.70 86.38 0.58 1.27 16 22 C 0.25 3.03 5.42 71.98 0.39 3.42 16 23 F -0.20 -2.59 17.34 44.97 0.78 -1.81 16 24 F -0.22 -3.89 17.32 44.97 0.78 -3.12 16 25 N -0.34 -8.19 12.36 -54.53 -0.67 -8.86 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 2.43 8.03 -2.38 -0.02 2.41 16 28 H 0.10 3.32 5.35 -2.51 -0.01 3.31 16 29 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.01 0.84 7.38 -2.38 -0.02 0.83 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.43 12.50 8.31 -92.71 -0.77 11.73 16 33 H 0.17 4.13 5.91 -2.91 -0.02 4.12 16 34 H 0.23 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.16 0.05 8.07 -2.39 -0.02 0.03 16 37 H 0.12 1.54 8.05 -2.39 -0.02 1.52 16 Total: -1.00 -73.83 335.32 5.02 -68.80 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.37 Total: 12.35 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 6.93 Total: 37.63 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -5.78 Total: -117.22 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.75 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.56 Total: -4.92 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.83 5.02 -68.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321271903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.745 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds