Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46850 * 2 1 4 4 C 1.53000 * 109.46911 * 240.00929 * 2 1 3 5 5 C 1.50702 * 109.47253 * 175.59611 * 4 2 1 6 6 C 1.38231 * 120.01022 * 95.05887 * 5 4 2 7 7 C 1.38226 * 120.01201 * 179.76852 * 6 5 4 8 8 C 1.38254 * 120.02672 * 0.51742 * 7 6 5 9 9 C 1.38194 * 120.01598 * 359.73611 * 8 7 6 10 10 C 1.38332 * 120.00390 * 275.34125 * 5 4 2 11 11 Cl 1.73599 * 120.01281 * 359.95117 * 10 5 4 12 12 N 1.46498 * 109.47594 * 120.00551 * 2 1 3 13 13 C 1.38827 * 119.99838 * 275.41041 * 12 2 1 14 14 C 1.39803 * 119.58241 * 359.97438 * 13 12 2 15 15 C 1.38591 * 119.48404 * 179.97438 * 14 13 12 16 16 C 1.38385 * 118.68638 * 0.02562 * 15 14 13 17 17 C 1.40556 * 119.15093 * 0.02562 * 16 15 14 18 18 C 1.41304 * 119.78736 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.40028 * 120.00106 * 179.97438 * 18 17 16 21 21 N 1.30743 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99917 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47428 * 90.00561 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00549 * 22 20 18 25 25 H 1.48506 * 109.47337 * 330.00261 * 22 20 18 26 26 N 1.31955 * 119.58297 * 179.72928 * 13 12 2 27 27 H 1.09002 * 109.46376 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47719 * 59.99857 * 1 2 3 29 29 H 1.09000 * 109.47165 * 299.99238 * 1 2 3 30 30 H 1.09008 * 109.47005 * 295.58650 * 4 2 1 31 31 H 1.08997 * 109.47510 * 55.59259 * 4 2 1 32 32 H 1.07999 * 119.99212 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.98565 * 180.27632 * 7 6 5 34 34 H 1.08001 * 119.99334 * 179.76945 * 8 7 6 35 35 H 1.07998 * 120.01179 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99942 * 95.40274 * 12 2 1 37 37 H 1.07998 * 120.25654 * 359.96023 * 14 13 12 38 38 H 1.08011 * 120.65494 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.42151 * 179.97438 * 16 15 14 40 40 H 0.96997 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5430 -0.6273 -1.3052 6 6 4.3190 -1.6538 -0.8002 7 6 5.6976 -1.5700 -0.8557 8 6 6.3013 -0.4549 -1.4066 9 6 5.5267 0.5743 -1.9071 10 6 4.1465 0.4887 -1.8566 11 17 3.1727 1.7809 -2.4855 12 7 2.0185 -0.6907 1.1961 13 6 2.1430 -0.0003 2.3940 14 6 1.8003 1.3539 2.4490 15 6 1.9250 2.0410 3.6462 16 6 2.3887 1.3598 4.7579 17 6 2.7180 -0.0014 4.6387 18 6 3.1933 -0.7099 5.7651 19 1 3.3022 -0.2055 6.7139 20 6 3.5222 -2.0663 5.6515 21 7 3.3899 -2.6771 4.5031 22 14 4.1499 -3.0030 7.1408 23 1 3.0020 -3.5981 7.8712 24 1 5.0670 -4.0829 6.6959 25 1 4.8797 -2.0727 8.0393 26 7 2.5787 -0.6319 3.4676 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 1.7426 -1.7691 -1.2108 31 1 1.6136 -0.2548 -2.1375 32 1 3.8480 -2.5232 -0.3659 33 1 6.3034 -2.3742 -0.4650 34 1 7.3785 -0.3883 -1.4463 35 1 5.9984 1.4456 -2.3370 36 1 2.2547 -1.6304 1.1509 37 1 1.4415 1.8608 1.5654 38 1 1.6652 3.0875 3.7101 39 1 2.4971 1.8679 5.7047 40 1 3.6180 -3.6165 4.4243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 47.712523 kcal Electronic energy + Delta-G solvation = -23675.008289 eV Core-core repulsion = 20286.919177 eV Total energy + Delta-G solvation = -3388.089112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.55945 -38.24890 -36.37436 -36.23625 -33.52967 -32.28046 -30.81872 -30.55612 -29.91414 -27.96037 -26.43554 -25.27242 -22.67068 -22.12918 -21.52657 -20.95218 -19.76228 -17.32006 -17.00469 -16.37044 -15.67503 -15.36936 -14.92544 -14.76733 -14.24125 -13.97691 -13.72966 -13.61573 -13.37304 -12.95982 -12.73171 -12.38451 -12.07784 -11.98582 -11.83094 -11.70859 -11.47354 -11.32857 -11.19719 -11.14708 -10.95181 -10.74641 -10.57649 -10.51072 -10.30559 -9.85403 -9.45494 -8.84672 -8.79448 -8.54720 -7.85442 -7.45093 -6.43505 -6.28478 -4.42330 1.23777 1.35271 2.19709 2.91175 3.12339 3.15892 3.30283 3.34619 3.69989 4.00905 4.22574 4.70674 4.81213 4.88995 5.00910 5.19780 5.31067 5.38789 5.49266 5.59371 5.73871 5.81419 5.90829 5.97659 6.04336 6.13626 6.20260 6.26188 6.31295 6.44748 6.52536 6.55487 6.72124 6.87538 6.92069 6.95706 7.02133 7.29616 7.66603 7.87772 7.99223 8.21727 8.43385 8.75223 8.85642 9.18805 10.29884 10.45450 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.004328 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.360338 B = 6467.538619 C = 7376.855985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.168 3.832 3 H 0.079 0.921 4 C -0.092 4.092 5 C -0.061 4.061 6 C -0.091 4.091 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.033 4.033 11 Cl -0.075 7.075 12 N -0.729 5.729 13 C 0.416 3.584 14 C -0.365 4.365 15 C -0.032 4.032 16 C -0.319 4.319 17 C 0.294 3.706 18 C -0.436 4.436 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.716 5.716 22 Si 0.902 3.098 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.262 1.262 26 N -0.531 5.531 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.392 0.608 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 0.926 -14.008 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.097 0.903 4 C -0.130 4.130 5 C -0.062 4.062 6 C -0.109 4.109 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.131 4.131 10 C -0.059 4.059 11 Cl -0.046 7.046 12 N -0.366 5.366 13 C 0.176 3.824 14 C -0.391 4.391 15 C -0.057 4.057 16 C -0.342 4.342 17 C 0.167 3.833 18 C -0.468 4.468 19 H 0.099 0.901 20 C -0.152 4.152 21 N -0.338 5.338 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.186 1.186 26 N -0.252 5.252 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.726 0.128 -14.309 14.413 hybrid contribution 0.108 0.324 0.718 0.795 sum 1.834 0.452 -13.590 13.721 Atomic orbital electron populations 1.22297 0.96418 1.01931 1.01861 1.20589 0.92881 0.96926 0.83561 0.90300 1.21009 0.90497 1.02367 0.99148 1.19656 0.96319 0.92903 0.97327 1.21028 0.93604 0.98476 0.97792 1.21237 0.94940 0.98246 0.98323 1.21048 0.99827 0.93607 0.98908 1.20965 0.91515 0.99675 1.00975 1.20762 0.91659 0.90688 1.02839 1.98345 1.71348 1.49301 1.85586 1.44181 1.74084 1.12159 1.06137 1.18491 0.89561 0.87526 0.86794 1.20639 1.24744 0.95344 0.98398 1.20588 0.95282 0.96858 0.92951 1.21515 1.17544 0.97173 0.97980 1.18180 0.87197 0.88042 0.89930 1.19555 1.37320 0.94157 0.95803 0.90057 1.26016 0.94434 0.98202 0.96512 1.70158 1.30177 1.09799 1.23702 0.86420 0.79288 0.79484 0.82113 1.19553 1.20308 1.18647 1.68215 1.23592 1.35889 0.97531 0.92716 0.92713 0.91689 0.90269 0.89474 0.85158 0.85552 0.85497 0.85361 0.77345 0.89161 0.89139 0.88895 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.38 37.16 0.35 -2.03 16 2 C 0.17 2.63 2.25 -67.93 -0.15 2.48 16 3 H 0.08 1.36 6.21 -51.93 -0.32 1.04 16 4 C -0.09 -1.19 4.39 -27.88 -0.12 -1.31 16 5 C -0.06 -0.85 4.88 -104.59 -0.51 -1.36 16 6 C -0.09 -1.26 9.28 -39.59 -0.37 -1.63 16 7 C -0.11 -1.41 10.05 -39.58 -0.40 -1.81 16 8 C -0.12 -1.40 10.04 -39.59 -0.40 -1.80 16 9 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16 10 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 11 Cl -0.07 -0.95 27.16 -51.86 -1.41 -2.35 16 12 N -0.73 -14.30 4.82 -53.90 -0.26 -14.56 16 13 C 0.42 10.12 7.62 -155.32 -1.18 8.93 16 14 C -0.37 -8.56 8.81 -38.87 -0.34 -8.90 16 15 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 16 C -0.32 -8.25 9.83 -38.65 -0.38 -8.63 16 17 C 0.29 8.26 6.55 -85.00 -0.56 7.71 16 18 C -0.44 -11.94 9.14 -37.75 -0.34 -12.29 16 19 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 20 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 21 N -0.72 -18.94 11.46 55.55 0.64 -18.30 16 22 Si 0.90 18.83 29.56 -169.99 -5.02 13.81 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 N -0.53 -14.63 7.89 -10.33 -0.08 -14.72 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.07 7.59 -51.93 -0.39 0.67 16 30 H 0.08 0.93 8.05 -51.92 -0.42 0.51 16 31 H 0.09 1.00 7.14 -51.93 -0.37 0.63 16 32 H 0.13 1.71 7.96 -52.49 -0.42 1.29 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.39 7.66 8.37 -40.82 -0.34 7.31 16 37 H 0.09 1.92 6.02 -52.49 -0.32 1.60 16 38 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -29.98 350.27 -11.49 -41.46 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.09 Total: 11.93 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -5.54 Total: -22.54 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.30 Total: -47.58 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.41 Total: -2.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.98 -11.49 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.177 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds