Wall clock time and date at job start Tue Mar 31 2020 11:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46850 * 2 1 4 4 C 1.53000 * 109.46911 * 240.00929 * 2 1 3 5 5 C 1.50702 * 109.47253 * 175.59611 * 4 2 1 6 6 C 1.38231 * 120.01022 * 95.05887 * 5 4 2 7 7 C 1.38226 * 120.01201 * 179.76852 * 6 5 4 8 8 C 1.38254 * 120.02672 * 0.51742 * 7 6 5 9 9 C 1.38194 * 120.01598 * 359.73611 * 8 7 6 10 10 C 1.38332 * 120.00390 * 275.34125 * 5 4 2 11 11 Cl 1.73599 * 120.01281 * 359.95117 * 10 5 4 12 12 N 1.46498 * 109.47594 * 120.00551 * 2 1 3 13 13 C 1.38827 * 119.99838 * 275.41041 * 12 2 1 14 14 C 1.39803 * 119.58241 * 359.97438 * 13 12 2 15 15 C 1.38591 * 119.48404 * 179.97438 * 14 13 12 16 16 C 1.38385 * 118.68638 * 0.02562 * 15 14 13 17 17 C 1.40556 * 119.15093 * 0.02562 * 16 15 14 18 18 C 1.41304 * 119.78736 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.40028 * 120.00106 * 179.97438 * 18 17 16 21 21 N 1.30743 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99917 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47428 * 90.00561 * 22 20 18 24 24 H 1.48499 * 109.47134 * 210.00549 * 22 20 18 25 25 H 1.48506 * 109.47337 * 330.00261 * 22 20 18 26 26 N 1.31955 * 119.58297 * 179.72928 * 13 12 2 27 27 H 1.09002 * 109.46376 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47719 * 59.99857 * 1 2 3 29 29 H 1.09000 * 109.47165 * 299.99238 * 1 2 3 30 30 H 1.09008 * 109.47005 * 295.58650 * 4 2 1 31 31 H 1.08997 * 109.47510 * 55.59259 * 4 2 1 32 32 H 1.07999 * 119.99212 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.98565 * 180.27632 * 7 6 5 34 34 H 1.08001 * 119.99334 * 179.76945 * 8 7 6 35 35 H 1.07998 * 120.01179 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99942 * 95.40274 * 12 2 1 37 37 H 1.07998 * 120.25654 * 359.96023 * 14 13 12 38 38 H 1.08011 * 120.65494 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.42151 * 179.97438 * 16 15 14 40 40 H 0.96997 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5430 -0.6273 -1.3052 6 6 4.3190 -1.6538 -0.8002 7 6 5.6976 -1.5700 -0.8557 8 6 6.3013 -0.4549 -1.4066 9 6 5.5267 0.5743 -1.9071 10 6 4.1465 0.4887 -1.8566 11 17 3.1727 1.7809 -2.4855 12 7 2.0185 -0.6907 1.1961 13 6 2.1430 -0.0003 2.3940 14 6 1.8003 1.3539 2.4490 15 6 1.9250 2.0410 3.6462 16 6 2.3887 1.3598 4.7579 17 6 2.7180 -0.0014 4.6387 18 6 3.1933 -0.7099 5.7651 19 1 3.3022 -0.2055 6.7139 20 6 3.5222 -2.0663 5.6515 21 7 3.3899 -2.6771 4.5031 22 14 4.1499 -3.0030 7.1408 23 1 3.0020 -3.5981 7.8712 24 1 5.0670 -4.0829 6.6959 25 1 4.8797 -2.0727 8.0393 26 7 2.5787 -0.6319 3.4676 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 1.7426 -1.7691 -1.2108 31 1 1.6136 -0.2548 -2.1375 32 1 3.8480 -2.5232 -0.3659 33 1 6.3034 -2.3742 -0.4650 34 1 7.3785 -0.3883 -1.4463 35 1 5.9984 1.4456 -2.3370 36 1 2.2547 -1.6304 1.1509 37 1 1.4415 1.8608 1.5654 38 1 1.6652 3.0875 3.7101 39 1 2.4971 1.8679 5.7047 40 1 3.6180 -3.6165 4.4243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:08 Heat of formation + Delta-G solvation = 33.786817 kcal Electronic energy + Delta-G solvation = -23675.612153 eV Core-core repulsion = 20286.919177 eV Total energy + Delta-G solvation = -3388.692976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.104 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67985 -39.96078 -37.68766 -37.37041 -35.36882 -33.71596 -32.35788 -31.71341 -31.48059 -29.68209 -27.60767 -27.09622 -23.71658 -23.55152 -23.24340 -22.35410 -21.27660 -19.19465 -18.16860 -17.90670 -16.94582 -16.61547 -16.39959 -16.30100 -15.90732 -15.36975 -14.99315 -14.93773 -14.65678 -14.38433 -14.33843 -13.77485 -13.51921 -13.41167 -13.07873 -12.91030 -12.85765 -12.71019 -12.56685 -12.48578 -12.41149 -12.18481 -12.12018 -11.81804 -11.67604 -11.59401 -11.24260 -10.62581 -9.81002 -9.79699 -9.56692 -9.39998 -8.22297 -8.19483 -6.44329 0.22540 0.34879 1.09778 1.18630 1.38630 1.42243 1.54643 1.60196 2.26540 2.66907 2.71745 2.95944 3.68599 3.82433 3.98171 4.08383 4.12892 4.28351 4.37873 4.40954 4.45525 4.49211 4.67970 4.71090 4.77928 4.89025 4.89656 5.00380 5.02506 5.03438 5.12930 5.19812 5.27864 5.40053 5.40492 5.46970 5.53903 5.76123 5.89864 6.00309 6.12013 6.26016 6.61690 6.88449 7.00529 7.29061 8.39065 8.54610 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.004328 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.360338 B = 6467.538619 C = 7376.855985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.066 0.934 4 C -0.083 4.083 5 C -0.076 4.076 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.047 4.047 11 Cl -0.069 7.069 12 N -0.720 5.720 13 C 0.405 3.595 14 C -0.367 4.367 15 C -0.032 4.032 16 C -0.349 4.349 17 C 0.261 3.739 18 C -0.473 4.473 19 H 0.082 0.918 20 C 0.029 3.971 21 N -0.748 5.748 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.259 1.259 26 N -0.561 5.561 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.391 0.609 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 0.849 -14.974 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.076 4.076 6 C -0.126 4.126 7 C -0.140 4.140 8 C -0.135 4.135 9 C -0.139 4.139 10 C -0.074 4.074 11 Cl -0.040 7.040 12 N -0.355 5.355 13 C 0.164 3.836 14 C -0.392 4.392 15 C -0.056 4.056 16 C -0.372 4.372 17 C 0.134 3.866 18 C -0.505 4.505 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.370 5.370 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.183 1.183 26 N -0.284 5.284 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.225 0.775 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.980 0.067 -15.327 15.454 hybrid contribution 0.003 0.413 0.873 0.966 sum 1.983 0.480 -14.454 14.597 Atomic orbital electron populations 1.22231 0.95055 1.02448 1.02168 1.20777 0.93795 0.96206 0.83106 0.91598 1.20954 0.90092 1.02925 0.98122 1.19786 0.96797 0.93195 0.97868 1.21194 0.94320 0.98793 0.98341 1.21521 0.94915 0.99133 0.98447 1.21396 1.01251 0.92955 0.97890 1.21287 0.91361 1.00457 1.00752 1.20966 0.92339 0.90890 1.03166 1.98340 1.71246 1.48927 1.85474 1.44331 1.73227 1.12069 1.05848 1.18887 0.88905 0.88369 0.87468 1.20934 1.23944 0.95205 0.99148 1.20967 0.93939 0.98381 0.92314 1.21652 1.19390 0.96956 0.99168 1.18640 0.87961 0.89299 0.90706 1.19890 1.38993 0.95627 0.95983 0.89953 1.26875 0.94145 0.98461 0.99777 1.70239 1.30508 1.10449 1.25773 0.85223 0.78762 0.77897 0.77855 1.18932 1.19144 1.18294 1.68204 1.25056 1.36899 0.98245 0.92138 0.89675 0.94032 0.89065 0.87639 0.85235 0.84295 0.82916 0.83543 0.77485 0.86947 0.85885 0.88376 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.38 71.98 0.68 -3.63 16 2 C 0.17 5.01 2.25 44.99 0.10 5.12 16 3 H 0.07 2.18 6.21 -2.39 -0.01 2.17 16 4 C -0.08 -2.01 4.39 29.85 0.13 -1.87 16 5 C -0.08 -2.03 4.88 -19.84 -0.10 -2.12 16 6 C -0.11 -2.95 9.28 22.27 0.21 -2.75 16 7 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 8 C -0.12 -2.65 10.04 22.26 0.22 -2.43 16 9 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 10 C -0.05 -1.23 6.31 22.33 0.14 -1.09 16 11 Cl -0.07 -1.62 27.16 -2.72 -0.07 -1.70 16 12 N -0.72 -28.13 4.82 -324.44 -1.56 -29.69 16 13 C 0.40 19.86 7.62 133.42 1.02 20.88 16 14 C -0.37 -17.02 8.81 22.73 0.20 -16.82 16 15 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 16 C -0.35 -18.40 9.83 22.87 0.22 -18.18 16 17 C 0.26 15.16 6.55 40.17 0.26 15.42 16 18 C -0.47 -26.67 9.14 23.46 0.21 -26.46 16 19 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 20 C 0.03 1.53 5.50 85.29 0.47 2.00 16 21 N -0.75 -40.22 11.46 21.84 0.25 -39.97 16 22 Si 0.98 38.88 29.56 68.60 2.03 40.91 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 26 N -0.56 -31.74 7.89 -186.59 -1.47 -33.21 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.31 7.59 -2.39 -0.02 1.29 16 30 H 0.09 1.97 8.05 -2.38 -0.02 1.96 16 31 H 0.11 2.16 7.14 -2.39 -0.02 2.14 16 32 H 0.13 3.42 7.96 -2.91 -0.02 3.39 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.39 15.38 8.37 -92.71 -0.78 14.60 16 37 H 0.11 4.63 6.02 -2.91 -0.02 4.61 16 38 H 0.12 4.86 8.06 -2.90 -0.02 4.83 16 39 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.28 13.34 8.29 -92.71 -0.77 12.57 16 Total: -1.00 -65.84 350.27 3.90 -61.95 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: 0.29 Total: 40.37 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.44 Total: -38.66 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -2.78 Total: -102.87 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.70 kcal Total: -65.84 3.90 -61.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.734 kcal (2) G-P(sol) polarization free energy of solvation -65.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds