Wall clock time and date at job start Tue Mar 31 2020 11:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00169 * 2 1 4 4 C 1.50694 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.37964 * 120.08091 * 0.02562 * 4 3 2 6 6 C 1.38344 * 120.15510 * 180.29725 * 5 4 3 7 7 C 1.38397 * 120.29786 * 359.44716 * 6 5 4 8 8 C 1.37924 * 120.14878 * 0.55604 * 7 6 5 9 9 C 1.39609 * 120.07449 * 180.02562 * 4 3 2 10 10 C 1.47727 * 120.15133 * 359.94903 * 9 4 3 11 11 O 1.21474 * 120.00028 * 0.02562 * 10 9 4 12 12 O 1.34709 * 120.00137 * 179.97438 * 10 9 4 13 13 C 1.45207 * 116.99803 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47196 * 330.00035 * 13 12 10 15 15 C 1.50702 * 109.46792 * 210.00678 * 13 12 10 16 16 H 1.08005 * 119.99777 * 272.49816 * 15 13 12 17 17 C 1.37872 * 120.00361 * 92.49738 * 15 13 12 18 18 N 1.31514 * 119.99987 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99950 * 0.06774 * 17 15 13 20 20 H 1.48500 * 109.47210 * 84.86686 * 19 17 15 21 21 H 1.48505 * 109.46941 * 204.86974 * 19 17 15 22 22 H 1.48502 * 109.47113 * 324.86744 * 19 17 15 23 23 C 1.50690 * 109.46953 * 90.00450 * 13 12 10 24 24 C 1.34520 * 125.78832 * 216.15313 * 23 13 12 25 25 C 1.41385 * 106.84024 * 180.02562 * 24 23 13 26 26 C 1.34513 * 106.84121 * 359.97438 * 25 24 23 27 27 O 1.34304 * 108.42203 * 359.74048 * 26 25 24 28 28 H 1.08993 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46754 * 299.99762 * 1 2 3 30 30 H 1.09002 * 109.47366 * 59.99415 * 1 2 3 31 31 H 1.09002 * 109.46705 * 59.99995 * 3 2 1 32 32 H 1.08997 * 109.47097 * 300.00798 * 3 2 1 33 33 H 1.08000 * 119.92378 * 0.02566 * 5 4 3 34 34 H 1.07994 * 119.84809 * 179.72498 * 6 5 4 35 35 H 1.08002 * 119.92069 * 180.29754 * 7 6 5 36 36 H 1.08001 * 120.07013 * 179.69868 * 8 7 6 37 37 H 0.97001 * 119.99915 * 180.02562 * 18 17 15 38 38 H 1.07994 * 126.57584 * 0.03722 * 24 23 13 39 39 H 1.07996 * 126.57762 * 179.97438 * 25 24 23 40 40 H 1.07999 * 125.78910 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1076 -0.0583 -0.0016 6 6 5.4865 -0.1694 0.0040 7 6 6.2785 0.9656 -0.0009 8 6 5.6968 2.2162 0.0002 9 6 4.3054 2.3355 -0.0002 10 6 3.6754 3.6717 -0.0003 11 8 2.4649 3.7725 -0.0002 12 8 4.4434 4.7785 0.0007 13 6 3.7562 6.0576 0.0011 14 1 2.8004 5.9568 -0.5131 15 6 4.6027 7.0828 -0.7085 16 1 5.3459 7.6425 -0.1601 17 6 4.4284 7.3061 -2.0578 18 7 5.1675 8.2004 -2.6772 19 14 3.1416 6.3394 -3.0060 20 1 1.8212 7.0045 -2.8674 21 1 3.5207 6.2857 -4.4409 22 1 3.0602 4.9594 -2.4636 23 6 3.5180 6.4993 1.4220 24 6 2.4335 7.1572 1.8700 25 6 2.6264 7.3699 3.2544 26 6 3.8169 6.8289 3.5697 27 8 4.3497 6.2977 2.4572 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.4954 -0.9481 -0.0024 34 1 5.9471 -1.1462 0.0077 35 1 7.3544 0.8717 -0.0013 36 1 6.3160 3.1010 0.0013 37 1 5.0446 8.3578 -3.6264 38 1 1.5794 7.4638 1.2846 39 1 1.9481 7.8707 3.9292 40 1 4.2658 6.8189 4.5519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345981076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:32 Heat of formation + Delta-G solvation = -104.688792 kcal Electronic energy + Delta-G solvation = -26401.090983 eV Core-core repulsion = 22533.391338 eV Total energy + Delta-G solvation = -3867.699645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.44693 -41.64924 -40.00606 -38.54549 -37.55411 -35.23797 -33.93900 -33.05951 -32.78520 -31.85319 -28.96962 -28.38100 -26.55714 -25.52733 -24.43217 -22.83946 -22.58179 -21.81251 -21.18182 -19.65918 -18.89147 -18.50929 -17.95493 -17.39339 -17.22202 -17.06323 -16.80657 -16.66883 -16.32430 -15.65661 -15.45392 -15.43351 -15.16265 -14.61022 -14.30446 -13.99219 -13.80123 -13.70810 -13.58797 -13.43632 -13.23573 -13.16588 -12.97181 -12.71392 -12.51036 -12.13205 -12.07337 -11.87395 -11.64164 -11.30291 -11.09610 -10.89799 -10.81164 -10.05869 -9.79271 -9.36902 -8.65779 -6.81290 -0.34283 0.31149 0.82257 1.14600 1.18937 1.29610 1.54977 1.67227 1.86802 2.06274 2.21436 2.59307 2.72981 2.86834 3.64687 3.71358 3.93892 4.02496 4.09715 4.11599 4.19857 4.28745 4.30327 4.31971 4.44036 4.51351 4.52053 4.57415 4.76722 4.79680 4.89170 4.97173 5.02084 5.03757 5.18423 5.30167 5.33889 5.44025 5.56837 5.66926 5.88416 5.94606 6.06781 6.26975 6.32737 6.81014 6.88797 8.47763 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.005111 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.333631 B = 5477.219160 C = 6015.915828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.114 3.886 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.072 4.072 7 C -0.126 4.126 8 C -0.072 4.072 9 C -0.150 4.150 10 C 0.484 3.516 11 O -0.543 6.543 12 O -0.359 6.359 13 C 0.263 3.737 14 H 0.070 0.930 15 C -0.521 4.521 16 H 0.051 0.949 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.925 3.075 20 H -0.251 1.251 21 H -0.258 1.258 22 H -0.272 1.272 23 C -0.018 4.018 24 C -0.229 4.229 25 C -0.213 4.213 26 C -0.058 4.058 27 O -0.192 6.192 28 H 0.114 0.886 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.132 0.868 37 H 0.284 0.716 38 H 0.148 0.852 39 H 0.181 0.819 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 -16.567 7.396 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.038 3.962 4 C -0.047 4.047 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.151 4.151 10 C 0.332 3.668 11 O -0.437 6.437 12 O -0.275 6.275 13 C 0.211 3.789 14 H 0.087 0.913 15 C -0.557 4.557 16 H 0.069 0.931 17 C -0.152 4.152 18 N -0.530 5.530 19 Si 0.747 3.253 20 H -0.175 1.175 21 H -0.182 1.182 22 H -0.197 1.197 23 C -0.068 4.068 24 C -0.249 4.249 25 C -0.232 4.232 26 C -0.124 4.124 27 O -0.088 6.088 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.150 0.850 37 H 0.094 0.906 38 H 0.166 0.834 39 H 0.199 0.801 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.725 -16.669 7.198 18.535 hybrid contribution -0.958 0.968 -0.621 1.497 sum -4.683 -15.701 6.577 17.655 Atomic orbital electron populations 1.22953 0.79117 1.04362 1.00530 1.87716 1.21647 1.26971 1.95634 1.21161 0.89735 0.84214 1.01050 1.19891 0.94391 0.93004 0.97393 1.21193 0.95849 0.96188 0.99925 1.21911 0.92724 1.00456 0.93815 1.21575 1.02216 0.90730 0.99841 1.21626 0.92333 1.00228 0.94814 1.19195 0.95437 0.88811 1.11678 1.22003 0.85741 0.87060 0.71996 1.90663 1.16179 1.88467 1.48366 1.87062 1.42835 1.15705 1.81944 1.19177 0.94737 0.78706 0.86239 0.91291 1.20776 1.22457 1.17614 0.94809 0.93093 1.25742 0.97065 0.94699 0.97651 1.69926 1.38848 1.32410 1.11865 0.86070 0.80312 0.79702 0.79188 1.17543 1.18241 1.19658 1.23032 0.90805 1.03697 0.89315 1.21757 0.99970 1.06211 0.96941 1.22096 0.99484 1.06702 0.94907 1.24948 0.95842 1.00686 0.90960 1.84033 1.44797 1.62966 1.17047 0.86771 0.93714 0.93941 0.92173 0.92635 0.82713 0.80908 0.81689 0.85042 0.90647 0.83389 0.80124 0.73904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.83 9.19 -148.98 -1.37 -12.19 16 3 C 0.11 3.75 4.58 71.23 0.33 4.08 16 4 C -0.05 -1.51 5.91 -19.60 -0.12 -1.63 16 5 C -0.11 -2.79 9.37 22.23 0.21 -2.58 16 6 C -0.07 -1.37 10.04 22.33 0.22 -1.15 16 7 C -0.13 -2.79 10.03 22.23 0.22 -2.57 16 8 C -0.07 -2.28 9.62 22.54 0.22 -2.06 16 9 C -0.15 -5.63 5.87 -20.10 -0.12 -5.75 16 10 C 0.48 22.34 7.61 70.33 0.54 22.88 16 11 O -0.54 -26.05 12.67 19.92 0.25 -25.80 16 12 O -0.36 -18.27 9.09 -53.61 -0.49 -18.76 16 13 C 0.26 13.94 1.92 29.10 0.06 14.00 16 14 H 0.07 3.70 4.68 -2.39 -0.01 3.69 16 15 C -0.52 -30.67 9.23 25.60 0.24 -30.44 16 16 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 17 C 0.05 3.11 5.47 84.65 0.46 3.57 16 18 N -0.89 -52.82 13.96 21.45 0.30 -52.52 16 19 Si 0.93 44.44 26.88 68.60 1.84 46.29 16 20 H -0.25 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -13.54 6.80 99.48 0.68 -12.86 16 23 C -0.02 -0.87 6.17 24.83 0.15 -0.72 16 24 C -0.23 -9.72 10.81 22.19 0.24 -9.48 16 25 C -0.21 -7.16 10.91 22.19 0.24 -6.92 16 26 C -0.06 -1.93 12.09 66.97 0.81 -1.12 16 27 O -0.19 -8.60 10.64 0.56 0.01 -8.60 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 2.13 7.35 -2.39 -0.02 2.12 16 32 H 0.06 2.02 7.34 -2.39 -0.02 2.01 16 33 H 0.16 3.25 7.00 -2.91 -0.02 3.23 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.13 4.41 7.61 -2.91 -0.02 4.39 16 37 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.15 5.87 8.06 -2.91 -0.02 5.85 16 39 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.24 5.18 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -74.44 349.15 6.53 -67.92 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 1.03 Total: 21.75 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.95 Total: -18.09 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.30 Total: -52.52 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -1.60 Total: -65.35 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.84 Total: 46.29 kcal Total: -74.44 6.53 -67.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345981076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.770 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds