Wall clock time and date at job start Tue Mar 31 2020 11:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35918 * 116.99632 * 2 1 4 4 C 1.38478 * 119.98074 * 0.25311 * 3 2 1 5 5 C 1.39537 * 119.78542 * 180.18675 * 4 3 2 6 6 C 1.47742 * 120.12573 * 179.81084 * 5 4 3 7 7 O 1.21473 * 119.99910 * 359.72607 * 6 5 4 8 8 O 1.34710 * 119.99949 * 179.44552 * 6 5 4 9 9 C 1.45202 * 116.99623 * 180.27328 * 8 6 5 10 10 H 1.09001 * 109.47505 * 30.00669 * 9 8 6 11 11 C 1.50710 * 109.46799 * 150.00273 * 9 8 6 12 12 H 1.07998 * 119.99774 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99800 * 180.02562 * 11 9 8 14 14 N 1.31515 * 120.00393 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99803 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47050 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46858 * 120.00108 * 15 13 11 18 18 H 1.48501 * 109.46910 * 239.99529 * 15 13 11 19 19 C 1.50700 * 109.47859 * 270.00319 * 9 8 6 20 20 C 1.34507 * 125.79186 * 144.71248 * 19 9 8 21 21 C 1.41385 * 106.84080 * 179.89114 * 20 19 9 22 22 C 1.34522 * 106.84047 * 0.37867 * 21 20 19 23 23 O 1.34304 * 108.41692 * 359.76921 * 22 21 20 24 24 C 1.39659 * 119.75440 * 359.53713 * 5 4 3 25 25 C 1.37947 * 119.95831 * 0.25320 * 24 5 4 26 26 C 1.38294 * 120.21450 * 359.97438 * 25 24 5 27 27 C 1.50705 * 119.87775 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46989 * 60.00661 * 1 2 3 29 29 H 1.09004 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47439 * 300.00120 * 1 2 3 31 31 H 1.08000 * 120.11331 * 359.97187 * 4 3 2 32 32 H 0.96994 * 120.00268 * 180.02562 * 14 13 11 33 33 H 1.07992 * 126.58149 * 0.03453 * 20 19 9 34 34 H 1.07995 * 126.57976 * 180.16397 * 21 20 19 35 35 H 1.07998 * 125.78865 * 179.75125 * 22 21 20 36 36 H 1.07996 * 120.01879 * 180.27079 * 24 5 4 37 37 H 1.08003 * 119.89274 * 179.97438 * 25 24 5 38 38 H 1.08998 * 109.47100 * 89.99838 * 27 26 25 39 39 H 1.08996 * 109.46723 * 209.99501 * 27 26 25 40 40 H 1.08997 * 109.46723 * 329.99928 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2913 2.3721 0.0053 5 6 1.9290 3.6133 0.0013 6 6 1.1312 4.8568 0.0027 7 8 -0.0822 4.7999 0.0023 8 8 1.7494 6.0537 0.0102 9 6 0.9023 7.2330 0.0173 10 1 -0.0326 7.0059 0.5296 11 6 1.6087 8.3545 0.7347 12 1 2.5956 8.1967 1.1439 13 6 0.9949 9.5818 0.8685 14 7 -0.2067 9.7741 0.3698 15 14 1.8708 10.9720 1.7572 16 1 3.2017 10.5031 2.2196 17 1 2.0452 12.1194 0.8307 18 1 1.0618 11.3991 2.9270 19 6 0.6094 7.6498 -1.4010 20 6 -0.5453 8.1798 -1.8426 21 6 -0.3828 8.4206 -3.2263 22 6 0.8586 8.0154 -3.5492 23 8 1.4549 7.5494 -2.4396 24 6 3.3242 3.6758 0.0018 25 6 4.0658 2.5126 0.0010 26 6 3.4323 1.2833 0.0001 27 6 4.2500 0.0174 -0.0002 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2128 2.3173 0.0090 32 1 -0.6383 10.6376 0.4636 33 1 -1.4265 8.3846 -1.2529 34 1 -1.1160 8.8448 -3.8962 35 1 1.3006 8.0574 -4.5337 36 1 3.8221 4.6341 0.0032 37 1 5.1447 2.5622 0.0009 38 1 4.4468 -0.2883 1.0273 39 1 3.6996 -0.7704 -0.5146 40 1 5.1948 0.1954 -0.5137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346720762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:57 Heat of formation + Delta-G solvation = -82.113292 kcal Electronic energy + Delta-G solvation = -25947.911586 eV Core-core repulsion = 22081.190889 eV Total energy + Delta-G solvation = -3866.720698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34976 -40.45404 -39.30486 -37.33957 -35.75382 -33.37053 -32.90934 -31.69050 -30.24658 -29.68206 -27.77443 -27.40378 -26.52972 -23.50698 -22.33116 -22.16379 -20.74168 -20.36340 -19.38523 -18.23984 -16.94155 -16.85944 -16.17426 -16.03735 -15.89819 -15.58461 -15.16397 -15.03009 -14.75388 -14.46381 -14.01666 -13.66240 -13.64985 -13.16115 -12.81766 -12.40178 -12.24964 -12.16776 -11.93980 -11.79654 -11.58548 -11.41469 -11.37129 -11.16788 -11.09088 -11.08010 -10.98187 -10.38520 -10.14399 -9.83691 -9.43463 -8.89974 -8.84125 -8.64967 -8.20462 -7.25447 -6.22956 -4.42189 0.82252 1.39339 2.86462 2.96108 3.13486 3.19502 3.25610 3.29821 3.46150 3.89467 3.94611 4.18735 4.25358 4.70734 4.78797 4.96327 5.04478 5.07307 5.13395 5.19521 5.37158 5.41141 5.45656 5.53952 5.61000 5.73623 5.83128 6.03802 6.06681 6.19206 6.37060 6.40451 6.46631 6.65510 6.69108 6.98453 7.14689 7.23508 7.24642 7.34574 7.67004 7.71308 7.81977 8.33336 8.47110 8.74933 9.24900 10.74610 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.003661 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.400486 B = 7647.130500 C = 8248.294751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.109 3.891 4 C -0.145 4.145 5 C -0.079 4.079 6 C 0.498 3.502 7 O -0.512 6.512 8 O -0.340 6.340 9 C 0.299 3.701 10 H 0.079 0.921 11 C -0.529 4.529 12 H 0.079 0.921 13 C 0.069 3.931 14 N -0.867 5.867 15 Si 0.914 3.086 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.020 3.980 20 C -0.174 4.174 21 C -0.219 4.219 22 C -0.089 4.089 23 O -0.178 6.178 24 C -0.091 4.091 25 C -0.099 4.099 26 C -0.092 4.092 27 C -0.106 4.106 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.268 0.732 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.184 0.816 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 -15.388 -2.297 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.064 3.936 4 C -0.164 4.164 5 C -0.081 4.081 6 C 0.342 3.658 7 O -0.403 6.403 8 O -0.256 6.256 9 C 0.246 3.754 10 H 0.096 0.904 11 C -0.566 4.566 12 H 0.097 0.903 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.741 3.259 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.031 4.031 20 C -0.194 4.194 21 C -0.238 4.238 22 C -0.156 4.156 23 O -0.075 6.075 24 C -0.109 4.109 25 C -0.117 4.117 26 C -0.093 4.093 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.201 0.799 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.472 -15.512 -2.292 16.305 hybrid contribution -0.400 1.469 0.107 1.526 sum 4.072 -14.043 -2.185 14.784 Atomic orbital electron populations 1.23099 0.78246 1.03833 1.01935 1.86037 1.21415 1.26277 1.89082 1.18575 0.91655 0.84043 0.99293 1.21306 1.00959 0.90622 1.03530 1.19088 0.93595 0.90754 1.04640 1.21076 0.86395 0.85160 0.73133 1.90772 1.15100 1.88255 1.46127 1.86596 1.42554 1.14531 1.81911 1.19236 0.92349 0.78790 0.85022 0.90359 1.20932 1.04609 0.94857 1.36235 0.90273 1.24940 0.95096 0.98486 0.95104 1.70036 1.13237 1.24549 1.42392 0.86168 0.79729 0.80936 0.79084 1.19242 1.20661 1.20531 1.23549 0.87913 1.02944 0.88702 1.21282 0.99902 1.05298 0.92904 1.21717 0.97690 1.07560 0.96863 1.23605 0.94546 1.06908 0.90567 1.83988 1.41867 1.65410 1.16225 1.21504 0.92498 0.99698 0.97219 1.20883 1.00158 0.90585 1.00082 1.19472 0.90533 0.96442 1.02833 1.20654 0.98821 0.94382 1.02435 0.92410 0.88215 0.92365 0.84033 0.92175 0.83682 0.85151 0.79898 0.83757 0.84586 0.91135 0.91068 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.74 9.52 -19.48 -0.19 -3.93 16 3 C 0.11 1.47 6.65 -39.28 -0.26 1.21 16 4 C -0.15 -2.24 8.58 -39.01 -0.33 -2.57 16 5 C -0.08 -1.39 5.87 -105.00 -0.62 -2.01 16 6 C 0.50 10.85 7.87 34.62 0.27 11.13 16 7 O -0.51 -12.20 15.60 -19.25 -0.30 -12.50 16 8 O -0.34 -8.13 9.08 -43.33 -0.39 -8.53 16 9 C 0.30 7.95 2.42 -29.03 -0.07 7.88 16 10 H 0.08 2.22 7.16 -51.93 -0.37 1.85 16 11 C -0.53 -14.52 8.89 -34.44 -0.31 -14.82 16 12 H 0.08 2.13 7.81 -52.49 -0.41 1.72 16 13 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 14 N -0.87 -23.77 10.50 55.43 0.58 -23.19 16 15 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.02 0.52 5.67 -35.63 -0.20 0.32 16 20 C -0.17 -4.38 9.05 -39.70 -0.36 -4.74 16 21 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 22 C -0.09 -1.85 12.09 29.42 0.36 -1.49 16 23 O -0.18 -4.40 10.63 2.02 0.02 -4.38 16 24 C -0.09 -1.36 9.61 -39.16 -0.38 -1.74 16 25 C -0.10 -1.20 9.67 -39.67 -0.38 -1.58 16 26 C -0.09 -1.11 5.90 -104.38 -0.62 -1.73 16 27 C -0.11 -0.96 9.78 36.01 0.35 -0.61 16 28 H 0.06 0.52 7.67 -51.93 -0.40 0.13 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 31 H 0.14 2.12 5.88 -52.49 -0.31 1.81 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.15 3.74 7.51 -52.49 -0.39 3.35 16 34 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 36 H 0.14 2.15 7.61 -52.49 -0.40 1.75 16 37 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 40 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -31.71 349.93 -6.84 -38.55 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.74 Total: 5.92 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.08 Total: -12.94 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.58 Total: -23.19 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.86 Total: -29.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.71 -6.84 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346720762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.562 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds