Wall clock time and date at job start Tue Mar 31 2020 10:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48503 * 109.47040 * 239.99847 * 3 2 1 5 5 H 1.48498 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47197 * 119.99898 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.87746 * 300.69532 * 9 7 2 11 11 C 1.55152 * 111.04128 * 176.79441 * 9 7 2 12 12 C 1.54320 * 102.94118 * 206.40570 * 11 9 7 13 13 N 1.47014 * 107.27380 * 22.18831 * 12 11 9 14 14 C 1.34781 * 125.65284 * 181.02071 * 13 12 11 15 15 O 1.21599 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99219 * 0.04827 * 14 13 12 17 17 C 1.40847 * 119.99508 * 179.97438 * 16 14 13 18 18 C 1.40239 * 126.07665 * 0.02562 * 17 16 14 19 19 N 1.30838 * 108.34163 * 179.97438 * 18 17 16 20 20 N 1.40070 * 108.36360 * 0.02562 * 19 18 17 21 21 C 1.46497 * 126.05770 * 180.02562 * 20 19 18 22 22 F 1.39902 * 109.47251 * 119.97542 * 21 20 19 23 23 F 1.39906 * 109.47086 * 239.97575 * 21 20 19 24 24 C 1.35726 * 126.07649 * 179.71630 * 17 16 14 25 25 C 1.47430 * 108.70312 * 1.06155 * 13 12 11 26 26 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00311 * 62.42930 * 10 9 7 28 28 H 1.09007 * 110.71500 * 324.76880 * 11 9 7 29 29 H 1.09000 * 110.72475 * 88.03847 * 11 9 7 30 30 H 1.09000 * 109.87963 * 262.77148 * 12 11 9 31 31 H 1.09006 * 109.88030 * 141.61202 * 12 11 9 32 32 H 0.96998 * 120.00902 * 359.97438 * 16 14 13 33 33 H 1.07994 * 125.82809 * 359.92869 * 18 17 16 34 34 H 1.09003 * 109.47720 * 359.97231 * 21 20 19 35 35 H 1.08005 * 126.21870 * 0.02562 * 24 17 16 36 36 H 1.08997 * 110.36336 * 217.03107 * 25 13 12 37 37 H 1.09002 * 110.45871 * 94.75588 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4057 -2.5992 1.1484 11 6 2.2247 -3.7045 -0.0798 12 6 1.3626 -4.8018 -0.7387 13 7 0.2753 -4.1270 -1.4624 14 6 -0.7056 -4.7390 -2.1551 15 8 -1.5566 -4.0772 -2.7177 16 7 -0.7434 -6.0845 -2.2238 17 6 -1.7688 -6.7241 -2.9472 18 6 -2.8093 -6.0896 -3.6412 19 7 -3.5617 -7.0104 -4.1869 20 7 -3.0302 -8.2648 -3.8612 21 6 -3.5695 -9.5631 -4.2730 22 9 -2.6082 -10.2514 -5.0210 23 9 -3.9012 -10.3114 -3.1384 24 6 -1.9221 -8.0638 -3.1015 25 6 0.4361 -2.6699 -1.3057 26 1 -0.4850 0.8401 0.0004 27 1 -0.2835 -1.9221 1.1896 28 1 3.0856 -3.4638 -0.7036 29 1 2.5428 -4.0104 0.9168 30 1 0.9475 -5.4568 0.0273 31 1 1.9687 -5.3807 -1.4357 32 1 -0.0646 -6.6124 -1.7751 33 1 -2.9635 -5.0231 -3.7123 34 1 -4.4614 -9.4100 -4.8807 35 1 -1.2813 -8.8308 -2.6922 36 1 -0.5374 -2.1888 -1.2112 37 1 0.9836 -2.2539 -2.1515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466037668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:15 Heat of formation + Delta-G solvation = -99.012098 kcal Electronic energy + Delta-G solvation = -26243.485020 eV Core-core repulsion = 21886.387508 eV Total energy + Delta-G solvation = -4357.097513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.30090 -48.40347 -42.49074 -41.09877 -39.11464 -36.08647 -35.82431 -34.17060 -33.34013 -31.89572 -30.44764 -29.47379 -27.23950 -26.40504 -24.41838 -23.02823 -22.32497 -21.43697 -20.99896 -19.30875 -19.22632 -18.82528 -18.78272 -18.52386 -17.28880 -16.95503 -16.88013 -16.47042 -16.10852 -15.81735 -15.63846 -15.22277 -14.95867 -14.77228 -14.73539 -14.61737 -14.45739 -14.04840 -13.74308 -13.46700 -13.31671 -13.13672 -12.79663 -12.52674 -12.29709 -12.27028 -12.18411 -12.10311 -12.04263 -11.28134 -11.17161 -10.87631 -10.62565 -10.29961 -9.59273 -8.87455 -8.22611 -6.38935 0.43255 0.72550 1.42994 1.44879 1.46215 1.53118 1.55639 2.28946 2.40232 2.56467 2.98338 3.03984 3.23821 3.62024 3.65623 3.81568 3.93398 4.09347 4.18373 4.31877 4.33375 4.41571 4.65070 4.78075 4.98722 5.09318 5.12740 5.29421 5.40164 5.43800 5.48410 5.71329 5.78991 5.99900 6.11795 6.34079 6.67637 6.96658 7.31972 7.39177 7.46722 8.82632 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.002669 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.934549 B =10489.350628 C =10841.673170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.111 4.111 12 C 0.103 3.897 13 N -0.626 5.626 14 C 0.714 3.286 15 O -0.623 6.623 16 N -0.643 5.643 17 C 0.024 3.976 18 C 0.056 3.944 19 N -0.280 5.280 20 N -0.438 5.438 21 C 0.511 3.489 22 F -0.185 7.185 23 F -0.185 7.185 24 C 0.038 3.962 25 C 0.127 3.873 26 H 0.269 0.731 27 H 0.374 0.626 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.423 0.577 33 H 0.195 0.805 34 H 0.199 0.801 35 H 0.218 0.782 36 H 0.044 0.956 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 -20.014 -6.271 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.149 4.149 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.416 3.584 15 O -0.504 6.504 16 N -0.293 5.293 17 C -0.080 4.080 18 C -0.133 4.133 19 N -0.100 5.100 20 N -0.234 5.234 21 C 0.377 3.623 22 F -0.166 7.166 23 F -0.167 7.167 24 C -0.107 4.107 25 C 0.004 3.996 26 H 0.078 0.922 27 H 0.223 0.777 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.262 0.738 33 H 0.211 0.789 34 H 0.215 0.785 35 H 0.235 0.765 36 H 0.063 0.937 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.309 -20.377 -7.288 21.893 hybrid contribution 0.958 1.722 0.718 2.097 sum -2.351 -18.656 -6.570 19.918 Atomic orbital electron populations 1.69765 1.07139 1.28450 1.50114 1.25805 0.95725 1.02772 0.93149 0.85540 0.78300 0.78480 0.78893 1.19499 1.21315 1.19527 1.21785 0.93984 0.91240 1.52354 0.91224 1.19873 0.86812 0.93196 0.81029 1.86081 1.48890 1.57613 1.47030 1.22599 0.97322 0.93484 1.01448 1.22213 0.88053 0.95760 0.95891 1.47810 1.27340 1.08605 1.52434 1.15529 0.81408 0.81686 0.79769 1.90749 1.41648 1.65183 1.52791 1.41644 1.29334 1.03943 1.54348 1.17713 0.94814 0.91128 1.04367 1.24596 0.92518 1.00558 0.95637 1.77359 1.22022 0.87137 1.23433 1.49721 1.23152 1.06399 1.44096 1.21319 0.89450 0.71701 0.79802 1.93129 1.68158 1.79551 1.75780 1.93131 1.92138 1.76611 1.54799 1.22372 0.93161 0.95940 0.99180 1.22738 1.00138 0.77165 0.99599 0.92159 0.77662 0.89169 0.89624 0.90475 0.88663 0.73844 0.78900 0.78477 0.76498 0.93704 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 10.72 21.44 0.23 -49.07 16 2 C 0.03 1.36 5.30 84.65 0.45 1.81 16 3 Si 0.96 41.18 29.54 68.60 2.03 43.20 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.56 -28.09 8.26 25.60 0.21 -27.88 16 8 H 0.07 3.39 7.78 -2.91 -0.02 3.36 16 9 C 0.23 10.76 0.87 -10.15 -0.01 10.75 16 10 O -0.59 -29.47 13.15 -148.98 -1.96 -31.43 16 11 C -0.11 -3.89 6.13 31.78 0.19 -3.70 16 12 C 0.10 3.00 6.15 86.73 0.53 3.53 16 13 N -0.63 -23.95 3.33 -829.75 -2.76 -26.71 16 14 C 0.71 27.15 8.46 179.05 1.51 28.66 16 15 O -0.62 -28.46 13.75 -4.03 -0.06 -28.52 16 16 N -0.64 -17.75 5.44 -317.69 -1.73 -19.47 16 17 C 0.02 0.67 6.90 37.59 0.26 0.93 16 18 C 0.06 1.77 10.84 85.33 0.92 2.70 16 19 N -0.28 -7.62 12.57 -56.78 -0.71 -8.34 16 20 N -0.44 -9.14 3.90 -363.70 -1.42 -10.56 16 21 C 0.51 6.71 6.39 127.77 0.82 7.52 16 22 F -0.18 -2.63 17.48 44.97 0.79 -1.85 16 23 F -0.19 -2.71 17.49 44.97 0.79 -1.92 16 24 C 0.04 0.76 11.47 83.49 0.96 1.72 16 25 C 0.13 5.99 5.50 86.85 0.48 6.47 16 26 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.37 19.93 7.32 -74.06 -0.54 19.39 16 28 H 0.09 2.93 8.03 -2.38 -0.02 2.91 16 29 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.42 8.37 7.81 -92.71 -0.72 7.65 16 33 H 0.19 7.03 5.91 -2.91 -0.02 7.02 16 34 H 0.20 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.04 2.45 7.47 -2.39 -0.02 2.44 16 37 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 Total: -1.00 -67.58 326.24 1.41 -66.17 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.11 Total: 35.99 kcal Atomic # 6 Polarization: 26.18 SS G_CDS: 6.33 Total: 32.51 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -6.39 Total: -114.16 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -2.01 Total: -59.95 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.57 Total: -3.77 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -67.58 1.41 -66.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466037668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.840 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds