Wall clock time and date at job start Tue Mar 31 2020 11:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00096 * 2 1 4 4 H 1.09000 * 109.46995 * 30.00467 * 3 2 1 5 5 C 1.50706 * 109.47193 * 149.99843 * 3 2 1 6 6 O 1.20829 * 119.99519 * 5.00424 * 5 3 2 7 7 O 1.34224 * 120.00072 * 184.99907 * 5 3 2 8 8 C 1.45203 * 116.99806 * 179.97438 * 7 5 3 9 9 H 1.09001 * 109.47412 * 330.00244 * 8 7 5 10 10 C 1.50702 * 109.47049 * 90.00358 * 8 7 5 11 11 H 1.08002 * 120.00299 * 240.00351 * 10 8 7 12 12 C 1.37884 * 119.99942 * 59.71910 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.50701 * 109.47342 * 210.00067 * 8 7 5 19 19 C 1.34512 * 125.79026 * 144.71904 * 18 8 7 20 20 C 1.41380 * 106.83988 * 179.89468 * 19 18 8 21 21 C 1.34513 * 106.84289 * 0.36714 * 20 19 18 22 22 O 1.34303 * 108.41875 * 359.77470 * 21 20 19 23 23 C 1.50695 * 109.47108 * 269.99956 * 3 2 1 24 24 C 1.38230 * 120.00388 * 324.72845 * 23 3 2 25 25 C 1.38238 * 120.00132 * 179.79208 * 24 23 3 26 26 C 1.38234 * 119.99816 * 0.43375 * 25 24 23 27 27 C 1.38229 * 119.99987 * 359.82029 * 26 25 24 28 28 C 1.38230 * 120.00179 * 359.97438 * 27 26 25 29 29 H 1.08992 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47012 * 299.99933 * 1 2 3 31 31 H 1.09008 * 109.46955 * 59.99579 * 1 2 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 33 33 H 1.07999 * 126.57939 * 0.02562 * 19 18 8 34 34 H 1.08003 * 126.57774 * 180.16410 * 20 19 18 35 35 H 1.08001 * 125.79262 * 179.75296 * 21 20 19 36 36 H 1.08001 * 120.00078 * 359.97438 * 24 23 3 37 37 H 1.08000 * 119.99858 * 180.27298 * 25 24 23 38 38 H 1.08004 * 119.99860 * 179.83335 * 26 25 24 39 39 H 1.08000 * 119.99989 * 179.97438 * 27 26 25 40 40 H 1.08011 * 119.99933 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2639 0.7105 6 8 3.7880 0.2084 1.0899 7 8 4.0227 2.3993 0.9216 8 6 5.2945 2.2839 1.6125 9 1 5.2617 1.4344 2.2948 10 6 6.3964 2.0770 0.6054 11 1 7.0030 1.1843 0.6444 12 6 6.6262 3.0247 -0.3694 13 7 5.8875 4.1117 -0.4168 14 14 7.9870 2.7646 -1.6223 15 1 8.6665 1.4718 -1.3540 16 1 7.4046 2.7431 -2.9883 17 1 8.9713 3.8720 -1.5213 18 6 5.5583 3.5454 2.3935 19 6 6.1745 3.6175 3.5870 20 6 6.2094 4.9839 3.9482 21 6 5.6051 5.6644 2.9577 22 8 5.2128 4.7880 2.0187 23 6 2.2146 1.7643 -1.4208 24 6 2.5650 0.8519 -2.3982 25 6 2.7482 1.2722 -3.7024 26 6 2.5898 2.6064 -4.0272 27 6 2.2445 3.5197 -3.0488 28 6 2.0571 3.0988 -1.7455 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 6.0495 4.7786 -1.1024 33 1 6.5691 2.7904 4.1586 34 1 6.6361 5.4010 4.8484 35 1 5.4597 6.7340 2.9234 36 1 2.6928 -0.1899 -2.1436 37 1 3.0177 0.5585 -4.4669 38 1 2.7355 2.9352 -5.0456 39 1 2.1211 4.5622 -3.3025 40 1 1.7869 3.8124 -0.9811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:12 Heat of formation + Delta-G solvation = -74.157769 kcal Electronic energy + Delta-G solvation = -27089.449944 eV Core-core repulsion = 23223.074224 eV Total energy + Delta-G solvation = -3866.375720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32020 -39.85309 -38.50881 -37.27844 -35.27067 -32.96187 -31.85857 -31.77020 -30.52176 -29.82909 -27.72997 -26.54016 -25.66033 -23.22050 -22.20250 -21.66463 -20.68612 -19.87730 -19.43004 -17.33807 -16.82095 -16.74438 -16.52570 -16.03719 -15.47353 -15.17654 -14.90670 -14.43998 -14.37407 -14.24108 -14.17062 -13.75693 -13.05308 -13.00797 -12.67915 -12.35262 -12.21128 -11.83077 -11.77424 -11.62321 -11.36383 -11.27150 -11.06341 -10.99816 -10.94012 -10.64968 -10.33266 -9.88054 -9.82229 -9.40470 -9.06127 -8.82463 -8.75110 -8.51810 -8.37143 -7.34468 -6.20716 -4.41233 1.62148 1.80369 2.87429 3.12529 3.21957 3.28183 3.30095 3.34286 3.65303 4.07602 4.24977 4.28319 4.53731 4.90092 5.12360 5.12750 5.31097 5.32202 5.42609 5.47974 5.49249 5.59975 5.69297 5.85999 5.88494 5.94645 5.96795 6.26172 6.33230 6.38294 6.47004 6.78662 6.80309 6.81661 6.84512 6.89026 7.18840 7.24524 7.33508 7.47696 7.64040 7.75229 7.82529 8.40519 8.60551 8.97412 9.31943 10.78111 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.006080 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.941096 B = 4603.913000 C = 5624.222399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.140 3.860 4 H 0.096 0.904 5 C 0.465 3.535 6 O -0.508 6.508 7 O -0.328 6.328 8 C 0.280 3.720 9 H 0.071 0.929 10 C -0.547 4.547 11 H 0.074 0.926 12 C 0.084 3.916 13 N -0.819 5.819 14 Si 0.892 3.108 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.280 1.280 18 C 0.084 3.916 19 C -0.265 4.265 20 C -0.220 4.220 21 C -0.082 4.082 22 O -0.117 6.117 23 C -0.105 4.105 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.078 4.078 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.266 0.734 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.182 0.818 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 0.537 -2.146 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.080 3.920 4 H 0.114 0.886 5 C 0.306 3.694 6 O -0.397 6.397 7 O -0.244 6.244 8 C 0.228 3.772 9 H 0.088 0.912 10 C -0.582 4.582 11 H 0.092 0.908 12 C -0.127 4.127 13 N -0.452 5.452 14 Si 0.719 3.281 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.206 1.206 18 C 0.030 3.970 19 C -0.284 4.284 20 C -0.240 4.240 21 C -0.151 4.151 22 O -0.009 6.009 23 C -0.106 4.106 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.134 4.134 27 C -0.139 4.139 28 C -0.096 4.096 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.199 0.801 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.863 0.346 -2.367 10.149 hybrid contribution 1.049 0.299 -0.483 1.193 sum -8.814 0.644 -2.850 9.286 Atomic orbital electron populations 1.22865 0.80745 1.02935 1.00148 1.88008 1.19564 1.25037 1.94740 1.20259 0.92780 0.86114 0.92816 0.88615 1.22572 0.85646 0.83780 0.77363 1.90566 1.68775 1.31917 1.48472 1.86718 1.34893 1.33149 1.69615 1.18816 0.80187 0.87155 0.91075 0.91155 1.21261 1.16550 1.06857 1.13581 0.90801 1.25103 0.95792 0.94506 0.97291 1.70044 1.36045 1.07407 1.31658 0.86510 0.81722 0.78681 0.81197 1.19282 1.20434 1.20606 1.22777 0.97669 0.84676 0.91880 1.21167 1.11904 0.97031 0.98329 1.21487 1.07381 0.93886 1.01210 1.23774 1.05522 0.95593 0.90259 1.84408 1.61015 1.15069 1.40358 1.19826 1.02478 0.94379 0.93918 1.20947 0.97068 0.99915 0.92486 1.21044 1.01359 0.96000 0.96337 1.21105 0.99598 0.93548 0.99144 1.21000 1.00544 0.99241 0.93088 1.20916 0.97864 0.94444 0.96410 0.89250 0.93838 0.93759 0.92445 0.84939 0.85188 0.80064 0.85673 0.86396 0.86580 0.86222 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.81 101.05 1.09 1.44 16 2 O -0.36 -6.11 9.04 -55.14 -0.50 -6.61 16 3 C 0.14 2.56 2.84 -29.03 -0.08 2.48 16 4 H 0.10 1.49 7.70 -51.93 -0.40 1.09 16 5 C 0.47 10.77 7.24 36.01 0.26 11.04 16 6 O -0.51 -12.98 15.73 -25.47 -0.40 -13.38 16 7 O -0.33 -8.25 9.23 -42.04 -0.39 -8.63 16 8 C 0.28 7.26 2.58 -29.03 -0.07 7.19 16 9 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 10 C -0.55 -15.14 8.90 -34.44 -0.31 -15.44 16 11 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 12 C 0.08 2.28 5.25 -17.82 -0.09 2.19 16 13 N -0.82 -22.16 10.64 55.43 0.59 -21.57 16 14 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.08 2.06 5.59 -35.63 -0.20 1.86 16 19 C -0.26 -5.86 10.81 -39.70 -0.43 -6.29 16 20 C -0.22 -4.32 10.91 -39.70 -0.43 -4.76 16 21 C -0.08 -1.65 12.09 29.42 0.36 -1.30 16 22 O -0.12 -2.84 8.90 2.03 0.02 -2.83 16 23 C -0.11 -1.90 4.93 -104.63 -0.52 -2.42 16 24 C -0.09 -1.51 9.35 -39.58 -0.37 -1.88 16 25 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.12 -1.74 10.05 -39.59 -0.40 -2.13 16 27 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.08 -1.33 9.68 -39.58 -0.38 -1.71 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.18 2.85 8.06 -52.49 -0.42 2.43 16 36 H 0.13 2.20 7.64 -52.49 -0.40 1.80 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -32.32 354.89 -7.67 -39.99 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.94 Total: 6.01 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.37 Total: -14.45 kcal Atomic # 7 Polarization: -22.16 SS G_CDS: 0.59 Total: -21.57 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.27 Total: -31.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.32 -7.67 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.171 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds