Wall clock time and date at job start Tue Mar 31 2020 12:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46877 * 300.00294 * 3 2 1 6 6 H 1.48496 * 109.46768 * 60.00366 * 3 2 1 7 7 C 1.38950 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99542 * 201.65023 * 7 2 1 9 9 N 1.37090 * 120.00227 * 21.64956 * 7 2 1 10 10 C 1.46507 * 120.00075 * 16.51362 * 9 7 2 11 11 C 1.50698 * 109.47231 * 264.06448 * 10 9 7 12 12 O 1.20830 * 119.99688 * 359.97438 * 11 10 9 13 13 O 1.34221 * 119.99804 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00257 * 196.51318 * 9 7 2 15 15 O 1.21291 * 119.99753 * 359.97438 * 14 9 7 16 16 C 1.50703 * 120.00034 * 180.28033 * 14 9 7 17 17 C 1.52997 * 109.46705 * 179.72446 * 16 14 9 18 18 C 1.50702 * 109.46637 * 179.97438 * 17 16 14 19 19 C 1.38829 * 119.73934 * 269.72326 * 18 17 16 20 20 C 1.37754 * 120.67072 * 179.76256 * 19 18 17 21 21 C 1.39126 * 119.77397 * 0.51552 * 20 19 18 22 22 N 1.37689 * 133.50358 * 179.77415 * 21 20 19 23 23 H 0.96991 * 125.06453 * 0.02562 * 22 21 20 24 24 C 1.36828 * 109.87086 * 179.97438 * 22 21 20 25 25 C 1.34242 * 109.93102 * 359.97438 * 24 22 21 26 26 C 1.40661 * 119.33350 * 359.74229 * 21 20 19 27 27 C 1.36629 * 119.73647 * 90.00192 * 18 17 16 28 28 H 0.97002 * 119.99860 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46523 * 24.06344 * 10 9 7 30 30 H 1.08998 * 109.47061 * 144.05623 * 10 9 7 31 31 H 0.96702 * 116.99921 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.46738 * 299.72092 * 16 14 9 33 33 H 1.08995 * 109.47076 * 59.72115 * 16 14 9 34 34 H 1.09004 * 109.47234 * 299.99342 * 17 16 14 35 35 H 1.08995 * 109.47624 * 60.00005 * 17 16 14 36 36 H 1.08007 * 119.66488 * 0.02562 * 19 18 17 37 37 H 1.07991 * 120.11092 * 180.27859 * 20 19 18 38 38 H 1.08007 * 125.03649 * 180.02562 * 24 22 21 39 39 H 1.07998 * 126.50067 * 180.02562 * 25 24 22 40 40 H 1.08007 * 120.11629 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0318 -1.2364 0.3445 9 7 1.3960 -2.3485 -0.4390 10 6 0.1674 -2.2641 -1.2327 11 6 -1.0271 -2.4242 -0.3279 12 8 -0.8684 -2.5922 0.8581 13 8 -2.2671 -2.3803 -0.8396 14 6 1.9237 -3.5522 -0.1401 15 8 2.9411 -3.6221 0.5165 16 6 1.2534 -4.8108 -0.6275 17 6 2.0529 -6.0284 -0.1595 18 6 1.3823 -7.2871 -0.6464 19 6 0.4245 -7.9072 0.1445 20 6 -0.2040 -9.0558 -0.2838 21 6 0.1302 -9.6077 -1.5164 22 7 -0.3015 -10.7185 -2.2059 23 1 -0.9757 -11.3415 -1.8928 24 6 0.3615 -10.8119 -3.3992 25 6 1.2246 -9.7914 -3.5243 26 6 1.1051 -8.9785 -2.3115 27 6 1.7258 -7.8120 -1.8601 28 1 -0.4850 0.8401 0.0004 29 1 0.1208 -1.2941 -1.7278 30 1 0.1641 -3.0552 -1.9825 31 1 -3.0018 -2.4876 -0.2199 32 1 0.2420 -4.8634 -0.2243 33 1 1.2103 -4.8012 -1.7166 34 1 3.0643 -5.9759 -0.5627 35 1 2.0960 -6.0381 0.9296 36 1 0.1666 -7.4826 1.1035 37 1 -0.9510 -9.5282 0.3368 38 1 0.2119 -11.5908 -4.1323 39 1 1.8824 -9.6052 -4.3603 40 1 2.4747 -7.3263 -2.4682 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:51 Heat of formation + Delta-G solvation = -84.532324 kcal Electronic energy + Delta-G solvation = -25813.602158 eV Core-core repulsion = 21979.069314 eV Total energy + Delta-G solvation = -3834.532844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04616 -41.23290 -40.01212 -38.39278 -37.01578 -36.34774 -34.21150 -33.57997 -32.69162 -29.97749 -29.57511 -29.34787 -27.01293 -24.98042 -23.46635 -22.80942 -21.94601 -21.21364 -20.44443 -19.01314 -18.88660 -18.68113 -18.07690 -17.43364 -17.02079 -16.54198 -16.23503 -16.14424 -15.90284 -15.46636 -15.30877 -15.04461 -14.63152 -14.44085 -14.07613 -13.84571 -13.58413 -13.49024 -13.41608 -13.33561 -13.27877 -12.68896 -12.42867 -12.28210 -12.17736 -12.11433 -12.04415 -11.96539 -11.61845 -11.51148 -10.95204 -10.62704 -10.42476 -9.85409 -9.01217 -8.56186 -8.42594 -5.93890 0.26059 0.66989 1.35937 1.43362 1.57860 1.71429 1.89319 1.90793 2.27424 2.34826 2.55169 2.89197 3.02433 3.14660 3.74373 3.86098 4.07248 4.12019 4.21354 4.29113 4.32213 4.40080 4.51367 4.59163 4.69584 4.73834 4.78957 4.94382 4.97363 5.03392 5.12478 5.25354 5.26307 5.47003 5.52521 5.81053 5.88384 5.88738 5.95876 6.03274 6.28191 6.40782 6.80681 7.12397 7.31754 7.46969 7.95447 8.64310 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.003126 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.711178 B = 8954.089133 C = 9459.913795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.001 4.001 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.285 1.285 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.447 5.447 10 C 0.142 3.858 11 C 0.497 3.503 12 O -0.549 6.549 13 O -0.518 6.518 14 C 0.449 3.551 15 O -0.621 6.621 16 C -0.112 4.112 17 C -0.046 4.046 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.126 4.126 21 C 0.073 3.927 22 N -0.589 5.589 23 H 0.429 0.571 24 C 0.067 3.933 25 C -0.235 4.235 26 C -0.130 4.130 27 C -0.081 4.081 28 H 0.274 0.726 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.212 0.788 39 H 0.157 0.843 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -18.858 -10.209 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.166 5.166 10 C 0.017 3.983 11 C 0.339 3.661 12 O -0.438 6.438 13 O -0.330 6.330 14 C 0.240 3.760 15 O -0.508 6.508 16 C -0.152 4.152 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.146 4.146 21 C -0.035 4.035 22 N -0.193 5.193 23 H 0.269 0.731 24 C -0.060 4.060 25 C -0.259 4.259 26 C -0.135 4.135 27 C -0.099 4.099 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.273 0.727 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.229 0.771 39 H 0.175 0.825 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.013 -18.844 -9.836 22.091 hybrid contribution -0.450 0.988 1.215 1.630 sum -6.463 -17.857 -8.620 20.855 Atomic orbital electron populations 1.69894 1.06792 1.28601 1.47964 1.25958 0.96140 1.02319 0.95812 0.84915 0.78329 0.77068 0.78163 1.19759 1.18427 1.21095 1.19666 0.97446 0.85455 1.44367 0.90386 1.43648 1.21314 1.05276 1.46344 1.20838 0.80194 1.05877 0.91426 1.23829 0.84397 0.69596 0.88233 1.90604 1.86662 1.47207 1.19347 1.84450 1.16730 1.85423 1.46435 1.21083 0.86748 0.85591 0.82610 1.90474 1.28562 1.87367 1.44381 1.21504 0.99608 0.91239 1.02800 1.20067 0.98107 0.89822 1.00414 1.19313 0.99082 0.97004 0.95592 1.20886 0.96477 0.95553 0.99963 1.20187 1.02797 0.97282 0.94352 1.18413 0.98797 0.91034 0.95217 1.41845 1.37496 1.23196 1.16799 0.73139 1.22455 0.94265 1.00623 0.88609 1.22006 1.06714 0.98101 0.99119 1.19571 0.99660 0.97272 0.96979 1.20270 0.99663 0.94704 0.95287 0.91594 0.86252 0.86194 0.72746 0.90368 0.87611 0.91276 0.92530 0.85668 0.84011 0.77134 0.82516 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.96 9.28 21.66 0.20 -46.76 16 2 C 0.00 -0.05 4.87 84.93 0.41 0.36 16 3 Si 0.99 42.54 29.61 68.60 2.03 44.57 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.34 -19.58 9.34 84.04 0.79 -18.79 16 8 H 0.08 4.82 7.37 -2.91 -0.02 4.79 16 9 N -0.45 -23.18 2.18 -639.58 -1.39 -24.57 16 10 C 0.14 6.14 4.97 85.63 0.43 6.57 16 11 C 0.50 21.81 5.88 71.24 0.42 22.23 16 12 O -0.55 -28.94 16.79 21.95 0.37 -28.57 16 13 O -0.52 -17.69 13.42 -51.33 -0.69 -18.38 16 14 C 0.45 22.68 7.41 87.66 0.65 23.33 16 15 O -0.62 -36.22 15.62 -3.06 -0.05 -36.27 16 16 C -0.11 -4.25 4.29 29.85 0.13 -4.12 16 17 C -0.05 -1.64 4.62 29.85 0.14 -1.50 16 18 C -0.11 -3.27 5.10 -20.10 -0.10 -3.37 16 19 C -0.11 -3.00 9.66 22.30 0.22 -2.79 16 20 C -0.13 -2.89 10.08 22.37 0.23 -2.66 16 21 C 0.07 1.64 7.28 39.03 0.28 1.93 16 22 N -0.59 -8.65 6.07 -187.61 -1.14 -9.79 16 23 H 0.43 3.36 8.96 -92.72 -0.83 2.53 16 24 C 0.07 0.87 11.82 83.00 0.98 1.85 16 25 C -0.23 -4.46 11.08 23.51 0.26 -4.20 16 26 C -0.13 -3.29 6.37 -20.20 -0.13 -3.42 16 27 C -0.08 -2.25 9.67 22.23 0.22 -2.04 16 28 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.12 5.35 6.37 -2.38 -0.02 5.33 16 30 H 0.12 4.06 6.68 -2.39 -0.02 4.04 16 31 H 0.41 10.56 9.10 -74.06 -0.67 9.89 16 32 H 0.08 2.98 7.54 -2.38 -0.02 2.96 16 33 H 0.11 3.39 7.41 -2.39 -0.02 3.37 16 34 H 0.07 2.50 8.03 -2.38 -0.02 2.48 16 35 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 36 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.14 2.42 8.06 -2.92 -0.02 2.40 16 38 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -80.06 344.83 3.84 -76.22 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.40 Total: 30.17 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.91 Total: 13.38 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.33 Total: -81.12 kcal Atomic # 8 Polarization: -82.85 SS G_CDS: -0.37 Total: -83.22 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -80.06 3.84 -76.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.311 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds