Wall clock time and date at job start Tue Mar 31 2020 10:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47104 * 239.99855 * 3 2 1 5 5 H 1.48499 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46973 * 119.99786 * 3 2 1 7 7 C 1.38803 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00134 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47365 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47595 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.47419 * 179.97438 * 12 11 10 14 14 C 1.34237 * 116.99991 * 179.97438 * 13 12 11 15 15 O 1.20824 * 119.99663 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99997 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.47043 * 60.00231 * 16 14 13 18 18 C 1.53002 * 109.46999 * 179.97438 * 16 14 13 19 19 C 1.53006 * 109.46886 * 180.02562 * 18 16 14 20 20 C 1.52999 * 109.46997 * 300.00398 * 19 18 16 21 21 H 1.09001 * 109.47362 * 299.99445 * 20 19 18 22 22 C 1.50706 * 109.46573 * 180.02562 * 20 19 18 23 23 O 1.20818 * 120.00197 * 359.72236 * 22 20 19 24 24 O 1.34230 * 119.99763 * 179.97438 * 22 20 19 25 25 C 1.52997 * 109.47317 * 60.00177 * 20 19 18 26 26 C 1.52996 * 109.47131 * 299.99507 * 25 20 19 27 27 H 0.96999 * 119.99884 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46961 * 60.00175 * 10 9 7 29 29 H 1.09003 * 109.46958 * 300.00073 * 10 9 7 30 30 H 1.09003 * 109.47104 * 59.99696 * 11 10 9 31 31 H 1.09003 * 109.46863 * 300.00335 * 11 10 9 32 32 H 1.09003 * 109.47210 * 59.99679 * 12 11 10 33 33 H 1.09003 * 109.46776 * 299.99738 * 12 11 10 34 34 H 1.08996 * 109.46698 * 60.00243 * 18 16 14 35 35 H 1.09001 * 109.47142 * 300.00189 * 18 16 14 36 36 H 1.09000 * 109.46866 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.46611 * 60.00303 * 19 18 16 38 38 H 0.96692 * 116.99954 * 180.02562 * 24 22 20 39 39 H 1.08996 * 109.46952 * 59.99813 * 25 20 19 40 40 H 1.09001 * 109.46832 * 179.97438 * 25 20 19 41 41 H 1.09000 * 109.47380 * 300.00763 * 26 25 20 42 42 H 1.09000 * 109.47054 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9793 -5.3243 0.0036 12 6 3.1513 -6.3078 0.0051 13 8 2.6421 -7.6675 0.0063 14 6 3.5485 -8.6577 0.0072 15 8 4.7282 -8.3967 0.0065 16 6 3.0946 -10.0947 0.0091 17 1 2.4949 -10.2875 -0.8805 18 6 4.3165 -11.0155 0.0091 19 6 3.8556 -12.4745 0.0104 20 6 3.0148 -12.7426 1.2602 21 1 3.6146 -12.5503 2.1498 22 6 2.5614 -14.1798 1.2616 23 8 2.8741 -14.9129 0.3536 24 8 1.8060 -14.6442 2.2693 25 6 1.7929 -11.8218 1.2600 26 6 2.2537 -10.3629 1.2589 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7306 0.8928 29 1 3.1244 -3.7322 -0.8872 30 1 1.3709 -5.4848 -0.8865 31 1 1.3704 -5.4838 0.8935 32 1 3.7593 -6.1471 0.8954 33 1 3.7605 -6.1484 -0.8846 34 1 4.9165 -10.8228 0.8985 35 1 4.9153 -10.8247 -0.8815 36 1 4.7262 -13.1304 0.0109 37 1 3.2559 -12.6667 -0.8792 38 1 1.5399 -15.5728 2.2266 39 1 1.1932 -12.0142 0.3705 40 1 1.1937 -12.0132 2.1502 41 1 2.8536 -10.1706 2.1484 42 1 1.3832 -9.7069 1.2592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:22 Heat of formation + Delta-G solvation = -220.302838 kcal Electronic energy + Delta-G solvation = -23169.641067 eV Core-core repulsion = 19432.371972 eV Total energy + Delta-G solvation = -3737.269095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20147 -40.55653 -38.34908 -36.70404 -36.51691 -33.56329 -32.46018 -32.16675 -31.31481 -26.99979 -25.72597 -25.21276 -23.28638 -22.48139 -21.36444 -20.83812 -20.14095 -18.47413 -17.80029 -17.37705 -17.23300 -16.77842 -16.65122 -16.14690 -15.13989 -14.83409 -14.71374 -14.55420 -14.30613 -14.09784 -13.72512 -13.29318 -13.05795 -12.80124 -12.77093 -12.61400 -12.13796 -12.04911 -11.96262 -11.84511 -11.62970 -11.35839 -11.14772 -11.04978 -10.99131 -10.95255 -10.87677 -10.71425 -10.67229 -10.38653 -10.30118 -9.64864 -9.08247 -8.37895 -6.58132 -6.26002 -3.97278 1.72739 2.08638 2.48210 2.58495 3.20664 3.21990 3.26575 3.52144 4.01393 4.09681 4.18679 4.23817 4.47413 4.55292 4.70190 4.78608 4.85024 4.93780 4.97487 5.08518 5.11179 5.16861 5.27286 5.29435 5.38122 5.43186 5.47266 5.57495 5.59879 5.65818 5.75388 5.77584 5.87589 5.89943 6.03677 6.14848 6.42897 6.43381 6.65502 7.41749 7.57473 7.66917 8.33268 9.20242 10.82074 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.040960 B = 0.001782 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.433083 B =15706.765064 C =16172.139728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.072 3.928 13 O -0.354 6.354 14 C 0.463 3.537 15 O -0.509 6.509 16 C -0.083 4.083 17 H 0.111 0.889 18 C -0.104 4.104 19 C -0.103 4.103 20 C -0.083 4.083 21 H 0.112 0.888 22 C 0.483 3.517 23 O -0.515 6.515 24 O -0.516 6.516 25 C -0.108 4.108 26 C -0.111 4.111 27 H 0.268 0.732 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -28.211 3.335 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.270 6.270 14 C 0.306 3.694 15 O -0.397 6.397 16 C -0.102 4.102 17 H 0.129 0.871 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.102 4.102 21 H 0.130 0.870 22 C 0.325 3.675 23 O -0.403 6.403 24 O -0.327 6.327 25 C -0.146 4.146 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.623 -27.934 3.102 28.339 hybrid contribution 1.864 0.768 -0.051 2.017 sum 5.487 -27.167 3.051 27.883 Atomic orbital electron populations 1.70006 1.05922 1.27536 1.47010 1.25017 0.95101 0.99115 0.94500 0.86204 0.79228 0.81104 0.78885 1.19911 1.20780 1.19906 1.22658 0.94564 0.90700 1.58848 0.90890 1.84642 1.08776 0.99212 1.96890 1.23182 1.03445 0.96396 1.03321 1.21278 0.96443 0.91570 1.04286 1.23272 0.97747 0.76738 1.02544 1.86479 1.40341 1.16906 1.83290 1.23624 0.84674 0.88722 0.72411 1.90668 1.18720 1.85079 1.45266 1.21155 0.99310 0.87571 1.02163 0.87063 1.21460 0.95866 0.92315 1.04465 1.21476 0.99979 0.96285 0.96339 1.21184 0.99155 0.87409 1.02456 0.86963 1.23563 0.74334 0.91078 0.78511 1.90732 1.53960 1.59265 1.36317 1.84545 1.64986 1.34866 1.48352 1.21538 0.95621 0.93394 1.04040 1.21543 1.00449 0.96461 0.96382 0.92182 0.91751 0.91760 0.90363 0.90359 0.91199 0.91206 0.90494 0.90075 0.90254 0.90483 0.73140 0.90739 0.89659 0.90731 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.46 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.12 -3.17 21.44 -107.50 -2.30 -5.48 16 10 C -0.11 -2.26 5.67 37.15 0.21 -2.05 16 11 C -0.10 -1.55 5.60 -26.74 -0.15 -1.70 16 12 C 0.07 1.01 5.47 37.16 0.20 1.21 16 13 O -0.35 -4.55 10.13 -39.28 -0.40 -4.95 16 14 C 0.46 5.44 7.26 36.00 0.26 5.70 16 15 O -0.51 -7.41 15.73 -18.75 -0.29 -7.71 16 16 C -0.08 -0.64 2.63 -91.77 -0.24 -0.88 16 17 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 18 C -0.10 -0.73 4.49 -26.73 -0.12 -0.85 16 19 C -0.10 -0.63 4.49 -26.73 -0.12 -0.75 16 20 C -0.08 -0.46 2.63 -91.77 -0.24 -0.70 16 21 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 22 C 0.48 3.32 7.63 36.01 0.27 3.60 16 23 O -0.51 -5.19 16.74 -18.74 -0.31 -5.50 16 24 O -0.52 -2.52 13.33 -39.26 -0.52 -3.04 16 25 C -0.11 -0.54 5.14 -26.73 -0.14 -0.68 16 26 C -0.11 -0.69 5.14 -26.73 -0.14 -0.83 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 29 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.41 0.46 9.10 45.56 0.41 0.87 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -34.55 367.83 -8.46 -43.01 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.88 Total: -2.79 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 0.00 Total: -10.45 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.73 Total: -24.98 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -1.53 Total: -21.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.55 -8.46 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.293 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds