Wall clock time and date at job start Tue Mar 31 2020 10:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48505 * 109.46951 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47628 * 119.99374 * 3 2 1 7 7 C 1.37880 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.16795 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.99630 * 139.69766 * 10 9 7 12 12 C 1.39466 * 110.99876 * 221.26403 * 11 10 9 13 13 C 1.39971 * 120.13737 * 128.07633 * 12 11 10 14 14 C 1.48372 * 120.15541 * 359.97438 * 13 12 11 15 15 N 1.34076 * 126.68636 * 60.14931 * 14 13 12 16 16 N 1.28976 * 107.26588 * 180.02562 * 15 14 13 17 17 N 1.28724 * 108.95826 * 359.97438 * 16 15 14 18 18 H 0.97003 * 125.34073 * 179.97438 * 17 16 15 19 19 N 1.28871 * 109.32510 * 359.72936 * 17 16 15 20 20 C 1.39206 * 119.69002 * 180.02562 * 13 12 11 21 21 C 1.38065 * 119.94977 * 0.02562 * 20 13 12 22 22 C 1.38362 * 120.27696 * 359.97438 * 21 20 13 23 23 C 1.38166 * 120.32108 * 359.72793 * 22 21 20 24 24 N 1.48020 * 119.98354 * 180.27312 * 23 22 21 25 25 O 1.21792 * 120.00346 * 319.82705 * 24 23 22 26 26 O 1.21800 * 119.99949 * 139.82334 * 24 23 22 27 27 C 1.47479 * 87.83674 * 332.95898 * 11 10 9 28 28 H 0.97000 * 119.99801 * 0.02562 * 1 2 3 29 29 H 1.08995 * 113.38580 * 46.91704 * 9 7 2 30 30 H 1.09001 * 113.47676 * 24.89830 * 10 9 7 31 31 H 1.09002 * 113.47360 * 254.49765 * 10 9 7 32 32 H 1.08000 * 120.02879 * 180.02562 * 20 13 12 33 33 H 1.08000 * 119.86152 * 180.02562 * 21 20 13 34 34 H 1.07999 * 119.84357 * 180.02562 * 22 21 20 35 35 H 1.08995 * 113.47728 * 141.77894 * 27 11 10 36 36 H 1.09001 * 113.47472 * 272.17937 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2081 -4.3600 0.9539 12 6 1.8908 -5.0519 1.9540 13 6 1.6055 -4.8023 3.3014 14 6 0.5762 -3.8001 3.6721 15 7 -0.7224 -3.8248 3.3391 16 7 -1.2699 -2.7773 3.8552 17 7 -0.3735 -2.1071 4.4910 18 1 -0.5271 -1.2767 4.9684 19 7 0.7591 -2.7149 4.3983 20 6 2.2930 -5.4979 4.2920 21 6 3.2511 -6.4284 3.9423 22 6 3.5317 -6.6738 2.6099 23 6 2.8519 -5.9943 1.6173 24 7 3.1538 -6.2671 0.1941 25 8 4.3060 -6.4360 -0.1625 26 8 2.2499 -6.3228 -0.6203 27 6 0.8554 -2.9990 1.3992 28 1 -0.4850 0.8401 -0.0004 29 1 0.4431 -2.5323 -0.7304 30 1 3.1390 -3.5650 0.4215 31 1 2.1871 -4.2522 -0.9629 32 1 2.0770 -5.3099 5.3334 33 1 3.7833 -6.9676 4.7121 34 1 4.2823 -7.4035 2.3442 35 1 -0.2046 -2.8756 1.6208 36 1 1.4988 -2.6219 2.1942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606345339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:16 Heat of formation + Delta-G solvation = 219.499808 kcal Electronic energy + Delta-G solvation = -27103.878552 eV Core-core repulsion = 23211.281939 eV Total energy + Delta-G solvation = -3892.596613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.39393 -42.09452 -40.45758 -38.24845 -36.12577 -34.36450 -33.60950 -33.14703 -31.70695 -30.99866 -27.96912 -26.42299 -25.75675 -24.72843 -24.28827 -23.74073 -21.74511 -21.50544 -19.47845 -19.29988 -18.65255 -18.34657 -17.42391 -17.15389 -16.69081 -16.15413 -15.51977 -15.44910 -15.08219 -14.79347 -14.39565 -13.89415 -13.29925 -13.10407 -12.76793 -12.31403 -12.18556 -11.94287 -11.85380 -11.44456 -11.28644 -11.23779 -11.02832 -10.98780 -10.82233 -10.75867 -10.75113 -10.43011 -10.27176 -9.72835 -9.49362 -9.40773 -9.11645 -8.62689 -8.10900 -6.25322 -4.32366 0.17625 0.75615 1.29464 1.35946 1.65910 2.19302 2.43611 3.13186 3.17133 3.22591 3.25773 3.66254 4.05637 4.25917 4.42676 4.45251 4.62540 4.81554 4.99275 5.02229 5.08467 5.34037 5.44549 5.58111 5.67100 5.74642 5.89833 5.90553 5.94003 6.12175 6.31835 6.33363 6.55412 6.59359 6.67443 6.72204 7.39006 7.49666 7.71663 7.98253 8.08229 8.35011 8.70824 9.33829 10.83469 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.006547 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.536970 B = 4276.066963 C = 5852.143541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.056 3.944 10 C -0.012 4.012 11 N -0.421 5.421 12 C 0.196 3.804 13 C -0.052 4.052 14 C 0.227 3.773 15 N -0.249 5.249 16 N -0.046 5.046 17 N -0.224 5.224 18 H 0.474 0.526 19 N -0.288 5.288 20 C -0.014 4.014 21 C -0.155 4.155 22 C -0.023 4.023 23 C -0.076 4.076 24 N 0.032 4.968 25 O -0.177 6.177 26 O -0.126 6.126 27 C -0.007 4.007 28 H 0.265 0.735 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -8.439 12.504 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.036 3.964 10 C -0.137 4.137 11 N -0.132 5.132 12 C 0.089 3.911 13 C -0.059 4.059 14 C -0.053 4.053 15 N -0.122 5.122 16 N -0.041 5.041 17 N -0.069 5.069 18 H 0.328 0.672 19 N -0.140 5.140 20 C -0.035 4.035 21 C -0.174 4.174 22 C -0.043 4.043 23 C -0.162 4.162 24 N 0.554 4.446 25 O -0.387 6.387 26 O -0.349 6.349 27 C -0.134 4.134 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.105 0.895 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.043 -8.349 12.917 15.515 hybrid contribution 1.316 1.517 0.286 2.029 sum 3.360 -6.832 13.203 15.241 Atomic orbital electron populations 1.69965 1.05980 1.27238 1.48508 1.25021 0.94875 0.99315 0.94128 0.86625 0.79690 0.82612 0.78995 1.19738 1.21018 1.20167 1.20892 0.92839 0.89706 1.52542 0.92119 1.20148 0.94097 0.90550 0.91577 1.24549 0.95070 0.97712 0.96369 1.65644 1.24273 1.14625 1.08626 1.19525 0.86602 0.92630 0.92308 1.16826 0.98935 0.99124 0.91012 1.22748 0.91858 0.93525 0.97195 1.76289 1.05710 1.12881 1.17358 1.78925 1.18096 1.00593 1.06519 1.47605 1.02647 1.21508 1.35146 0.67162 1.74997 1.09104 1.07752 1.22114 1.21314 0.91733 0.91205 0.99224 1.20836 1.00637 1.01036 0.94929 1.20886 0.95479 0.96338 0.91552 1.20508 1.05969 1.08168 0.81590 1.43260 1.00378 0.98196 1.02781 1.94505 1.05966 1.54195 1.84081 1.94585 1.39987 1.52189 1.48152 1.24984 1.01814 0.83131 1.03474 0.92521 0.90609 0.91851 0.88830 0.83965 0.83345 0.83429 0.89516 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 13.26 55.43 0.74 -23.76 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.97 8.82 -34.44 -0.30 -14.27 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.40 3.78 -91.14 -0.34 1.05 16 10 C -0.01 -0.27 5.03 -7.55 -0.04 -0.31 16 11 N -0.42 -8.95 5.84 -180.13 -1.05 -10.00 16 12 C 0.20 3.57 5.28 -83.55 -0.44 3.13 16 13 C -0.05 -0.83 5.58 -104.72 -0.58 -1.42 16 14 C 0.23 3.87 4.34 -156.28 -0.68 3.19 16 15 N -0.25 -4.58 10.31 32.15 0.33 -4.25 16 16 N -0.05 -0.76 13.21 60.35 0.80 0.03 16 17 N -0.22 -3.04 7.90 60.35 0.48 -2.56 16 18 H 0.47 4.18 8.96 -340.36 -3.05 1.13 16 19 N -0.29 -4.46 11.83 32.16 0.38 -4.08 16 20 C -0.01 -0.17 9.77 -39.29 -0.38 -0.55 16 21 C -0.15 -1.50 10.03 -39.60 -0.40 -1.90 16 22 C -0.02 -0.27 9.67 -39.56 -0.38 -0.66 16 23 C -0.08 -1.26 6.08 -79.78 -0.48 -1.75 16 24 N 0.03 0.59 3.32 34.04 0.11 0.71 16 25 O -0.18 -3.20 19.00 -29.46 -0.56 -3.76 16 26 O -0.13 -2.51 15.80 -29.46 -0.47 -2.98 16 27 C -0.01 -0.17 4.66 -7.45 -0.03 -0.20 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.08 2.09 8.11 -51.93 -0.42 1.66 16 30 H 0.06 1.41 7.72 -51.93 -0.40 1.01 16 31 H 0.09 2.07 6.36 -51.93 -0.33 1.74 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.15 1.42 8.04 -52.49 -0.42 1.00 16 35 H 0.09 2.10 5.78 -51.93 -0.30 1.80 16 36 H 0.07 1.67 5.64 -51.93 -0.29 1.38 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -31.88 312.69 -9.33 -41.21 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.61 Total: 1.15 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.17 Total: -11.88 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 1.78 Total: -43.91 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -1.03 Total: -6.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.88 -9.33 -41.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.710 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 228.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 219.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds