Wall clock time and date at job start Tue Mar 31 2020 10:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48505 * 109.46951 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47628 * 119.99374 * 3 2 1 7 7 C 1.37880 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.16795 * 179.97438 * 9 7 2 11 11 N 1.47479 * 87.99630 * 139.69766 * 10 9 7 12 12 C 1.39466 * 110.99876 * 221.26403 * 11 10 9 13 13 C 1.39971 * 120.13737 * 128.07633 * 12 11 10 14 14 C 1.48372 * 120.15541 * 359.97438 * 13 12 11 15 15 N 1.34076 * 126.68636 * 60.14931 * 14 13 12 16 16 N 1.28976 * 107.26588 * 180.02562 * 15 14 13 17 17 N 1.28724 * 108.95826 * 359.97438 * 16 15 14 18 18 H 0.97003 * 125.34073 * 179.97438 * 17 16 15 19 19 N 1.28871 * 109.32510 * 359.72936 * 17 16 15 20 20 C 1.39206 * 119.69002 * 180.02562 * 13 12 11 21 21 C 1.38065 * 119.94977 * 0.02562 * 20 13 12 22 22 C 1.38362 * 120.27696 * 359.97438 * 21 20 13 23 23 C 1.38166 * 120.32108 * 359.72793 * 22 21 20 24 24 N 1.48020 * 119.98354 * 180.27312 * 23 22 21 25 25 O 1.21792 * 120.00346 * 319.82705 * 24 23 22 26 26 O 1.21800 * 119.99949 * 139.82334 * 24 23 22 27 27 C 1.47479 * 87.83674 * 332.95898 * 11 10 9 28 28 H 0.97000 * 119.99801 * 0.02562 * 1 2 3 29 29 H 1.08995 * 113.38580 * 46.91704 * 9 7 2 30 30 H 1.09001 * 113.47676 * 24.89830 * 10 9 7 31 31 H 1.09002 * 113.47360 * 254.49765 * 10 9 7 32 32 H 1.08000 * 120.02879 * 180.02562 * 20 13 12 33 33 H 1.08000 * 119.86152 * 180.02562 * 21 20 13 34 34 H 1.07999 * 119.84357 * 180.02562 * 22 21 20 35 35 H 1.08995 * 113.47728 * 141.77894 * 27 11 10 36 36 H 1.09001 * 113.47472 * 272.17937 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2081 -4.3600 0.9539 12 6 1.8908 -5.0519 1.9540 13 6 1.6055 -4.8023 3.3014 14 6 0.5762 -3.8001 3.6721 15 7 -0.7224 -3.8248 3.3391 16 7 -1.2699 -2.7773 3.8552 17 7 -0.3735 -2.1071 4.4910 18 1 -0.5271 -1.2767 4.9684 19 7 0.7591 -2.7149 4.3983 20 6 2.2930 -5.4979 4.2920 21 6 3.2511 -6.4284 3.9423 22 6 3.5317 -6.6738 2.6099 23 6 2.8519 -5.9943 1.6173 24 7 3.1538 -6.2671 0.1941 25 8 4.3060 -6.4360 -0.1625 26 8 2.2499 -6.3228 -0.6203 27 6 0.8554 -2.9990 1.3992 28 1 -0.4850 0.8401 -0.0004 29 1 0.4431 -2.5323 -0.7304 30 1 3.1390 -3.5650 0.4215 31 1 2.1871 -4.2522 -0.9629 32 1 2.0770 -5.3099 5.3334 33 1 3.7833 -6.9676 4.7121 34 1 4.2823 -7.4035 2.3442 35 1 -0.2046 -2.8756 1.6208 36 1 1.4988 -2.6219 2.1942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606345339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:16 Heat of formation + Delta-G solvation = 195.971327 kcal Electronic energy + Delta-G solvation = -27104.898824 eV Core-core repulsion = 23211.281939 eV Total energy + Delta-G solvation = -3893.616885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.64179 -43.47099 -41.93384 -39.54782 -37.54587 -35.61295 -35.04081 -34.82625 -33.09151 -32.26021 -29.56897 -27.82407 -27.38091 -26.36397 -25.57517 -25.17612 -23.02854 -22.72657 -21.26169 -20.58543 -19.91662 -19.73183 -19.06694 -18.50691 -18.12225 -17.61959 -16.79172 -16.71432 -16.62734 -16.51117 -15.76885 -15.20333 -14.75657 -14.45654 -14.23664 -13.77804 -13.60407 -13.37432 -13.27107 -13.01573 -12.91991 -12.69445 -12.55900 -12.49396 -12.33177 -12.20681 -12.15265 -12.09019 -11.81524 -11.37898 -11.09679 -11.02947 -10.68294 -10.50269 -9.49156 -8.29755 -6.44744 -1.05994 -0.40086 0.08075 0.10396 0.38433 0.92629 1.34398 1.37382 1.39858 1.45121 2.08575 2.30664 2.49480 2.67839 2.95351 3.21412 3.29721 3.55413 3.63339 3.88717 3.88869 3.99154 4.03409 4.10059 4.24642 4.38408 4.44485 4.53857 4.57283 4.81969 4.83474 4.97539 5.03496 5.18330 5.35723 5.41355 5.57499 5.60546 5.86556 6.03982 6.52775 6.62111 7.09699 7.24831 8.79412 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.011405 B = 0.006547 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.536970 B = 4276.066963 C = 5852.143541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.008 3.992 11 N -0.432 5.432 12 C 0.155 3.845 13 C -0.069 4.069 14 C 0.218 3.782 15 N -0.284 5.284 16 N -0.059 5.059 17 N -0.200 5.200 18 H 0.492 0.508 19 N -0.285 5.285 20 C 0.000 4.000 21 C -0.116 4.116 22 C -0.017 4.017 23 C -0.091 4.091 24 N 0.034 4.966 25 O -0.153 6.153 26 O -0.189 6.189 27 C 0.022 3.978 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.209 0.791 34 H 0.180 0.820 35 H 0.067 0.933 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 -9.274 15.884 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.016 3.984 10 C -0.117 4.117 11 N -0.144 5.144 12 C 0.051 3.949 13 C -0.076 4.076 14 C -0.063 4.063 15 N -0.156 5.156 16 N -0.054 5.054 17 N -0.050 5.050 18 H 0.350 0.650 19 N -0.137 5.137 20 C -0.020 4.020 21 C -0.134 4.134 22 C -0.036 4.036 23 C -0.177 4.177 24 N 0.552 4.448 25 O -0.373 6.373 26 O -0.398 6.398 27 C -0.106 4.106 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.197 0.803 33 H 0.226 0.774 34 H 0.197 0.803 35 H 0.085 0.915 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.529 -9.200 16.277 19.238 hybrid contribution 0.665 1.680 -0.578 1.897 sum 5.194 -7.520 15.699 18.166 Atomic orbital electron populations 1.70093 1.07477 1.28121 1.49335 1.25815 0.95642 1.02674 0.93541 0.85582 0.78468 0.78264 0.79269 1.19450 1.20378 1.19059 1.21137 0.92865 0.90789 1.52925 0.92312 1.20038 0.94002 0.91736 0.92587 1.24161 0.94543 0.96310 0.96709 1.65617 1.25240 1.13930 1.09582 1.19613 0.88600 0.94119 0.92604 1.17138 0.99504 0.99985 0.90950 1.23061 0.91737 0.94164 0.97329 1.76252 1.06919 1.13956 1.18493 1.78859 1.18641 1.00756 1.07104 1.47691 1.01883 1.21618 1.33835 0.64972 1.74947 1.09388 1.07360 1.22051 1.21856 0.90406 0.89812 0.99920 1.21556 0.98328 0.98665 0.94879 1.21469 0.94947 0.95738 0.91465 1.20830 1.06941 1.09127 0.80759 1.43612 1.00009 0.97447 1.03757 1.94450 1.05956 1.52314 1.84598 1.94605 1.40262 1.55472 1.49458 1.24447 1.00293 0.84565 1.01265 0.92398 0.94498 0.92188 0.89724 0.80320 0.77450 0.80261 0.91477 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 13.26 21.45 0.28 -52.27 16 2 C 0.02 1.33 5.46 84.66 0.46 1.79 16 3 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.54 -29.95 8.82 25.60 0.23 -29.73 16 8 H 0.06 3.20 7.81 -2.92 -0.02 3.17 16 9 C 0.04 1.92 3.78 -11.13 -0.04 1.87 16 10 C 0.01 0.40 5.03 83.57 0.42 0.82 16 11 N -0.43 -19.26 5.84 -723.82 -4.23 -23.49 16 12 C 0.15 5.63 5.28 38.47 0.20 5.84 16 13 C -0.07 -2.09 5.58 -19.93 -0.11 -2.20 16 14 C 0.22 7.28 4.34 137.33 0.60 7.88 16 15 N -0.28 -10.64 10.31 -52.21 -0.54 -11.18 16 16 N -0.06 -1.97 13.21 37.02 0.49 -1.48 16 17 N -0.20 -5.33 7.90 37.02 0.29 -5.04 16 18 H 0.49 8.19 8.96 -347.53 -3.12 5.08 16 19 N -0.28 -8.49 11.83 -52.16 -0.62 -9.11 16 20 C 0.00 0.00 9.77 22.46 0.22 0.22 16 21 C -0.12 -1.48 10.03 22.26 0.22 -1.25 16 22 C -0.02 -0.33 9.67 22.28 0.22 -0.11 16 23 C -0.09 -2.88 6.08 36.48 0.22 -2.65 16 24 N 0.03 1.25 3.32 -46.21 -0.15 1.10 16 25 O -0.15 -5.35 19.00 18.90 0.36 -4.99 16 26 O -0.19 -7.95 15.80 18.89 0.30 -7.66 16 27 C 0.02 1.04 4.66 83.64 0.39 1.42 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.04 2.22 8.11 -2.39 -0.02 2.20 16 30 H 0.06 2.78 7.72 -2.39 -0.02 2.76 16 31 H 0.08 4.06 6.36 -2.39 -0.02 4.04 16 32 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 34 H 0.18 2.41 8.04 -2.91 -0.02 2.39 16 35 H 0.07 3.45 5.78 -2.39 -0.01 3.43 16 36 H 0.07 3.27 5.64 -2.39 -0.01 3.26 16 Total: -1.00 -75.45 312.69 -0.71 -76.16 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -1.94 Total: 9.70 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.02 Total: -16.11 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.47 Total: -101.47 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.66 Total: -12.65 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -75.45 -0.71 -76.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.130 kcal (2) G-P(sol) polarization free energy of solvation -75.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds