Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46630 * 154.79207 * 3 2 1 5 5 N 1.46502 * 109.46804 * 179.97438 * 4 3 2 6 6 C 1.46508 * 119.99884 * 274.90747 * 5 4 3 7 7 C 1.50694 * 109.47280 * 263.45695 * 6 5 4 8 8 H 1.07999 * 120.00195 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00034 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99559 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00011 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47238 * 89.99888 * 11 9 7 13 13 H 1.48500 * 109.47026 * 209.99545 * 11 9 7 14 14 H 1.48493 * 109.47313 * 329.99284 * 11 9 7 15 15 C 1.34775 * 120.00125 * 94.91269 * 5 4 3 16 16 O 1.21711 * 119.99816 * 4.19520 * 15 5 4 17 17 C 1.46553 * 119.99790 * 184.19561 * 15 5 4 18 18 C 1.37742 * 125.95476 * 173.93693 * 17 15 5 19 19 C 1.39903 * 106.75378 * 179.78761 * 18 17 15 20 20 C 1.36460 * 107.09884 * 0.37616 * 19 18 17 21 21 C 1.47820 * 125.65260 * 179.88337 * 20 19 18 22 22 N 1.34239 * 126.70932 * 359.74451 * 21 20 19 23 23 N 1.28977 * 107.24892 * 179.97438 * 22 21 20 24 24 N 1.28717 * 109.00782 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.31636 * 179.97438 * 24 23 22 26 26 N 1.28872 * 109.36947 * 359.97438 * 24 23 22 27 27 O 1.34329 * 108.69273 * 359.61744 * 20 19 18 28 28 H 1.08995 * 109.47060 * 34.79001 * 3 2 1 29 29 H 1.08997 * 109.46997 * 274.78652 * 3 2 1 30 30 H 1.08998 * 109.47379 * 59.99617 * 4 3 2 31 31 H 1.09001 * 109.47442 * 299.99575 * 4 3 2 32 32 H 1.09005 * 109.46617 * 23.45685 * 6 5 4 33 33 H 1.08995 * 109.46717 * 143.45178 * 6 5 4 34 34 H 0.97006 * 119.99713 * 180.02562 * 10 9 7 35 35 H 1.07998 * 126.62407 * 0.02562 * 18 17 15 36 36 H 1.08001 * 126.45027 * 180.23841 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1174 1.3061 -0.6144 5 7 4.5824 1.3070 -0.6139 6 6 5.3142 1.7479 0.5764 7 6 5.7047 3.1948 0.4187 8 1 5.4351 3.7322 -0.4785 9 6 6.4070 3.8323 1.4194 10 7 6.7356 3.1777 2.5117 11 14 6.8916 5.6256 1.2236 12 1 5.8152 6.4916 1.7684 13 1 8.1539 5.8808 1.9631 14 1 7.0911 5.9302 -0.2160 15 6 5.2570 0.9025 -1.7083 16 8 4.6514 0.6091 -2.7225 17 6 6.7196 0.8158 -1.6770 18 6 7.5213 0.3098 -2.6763 19 6 8.8424 0.4252 -2.2307 20 6 8.7988 0.9832 -0.9861 21 6 9.9696 1.2859 -0.1361 22 7 11.2587 1.0623 -0.4366 23 7 11.9610 1.4667 0.5668 24 7 11.1714 1.9293 1.4719 25 1 11.4505 2.2950 2.3259 26 7 9.9521 1.8308 1.0664 27 8 7.5159 1.2173 -0.6640 28 1 2.9718 -0.8431 -0.5863 29 1 2.9714 -0.0849 1.0241 30 1 2.7536 2.1498 -0.0281 31 1 2.7540 1.3917 -1.6385 32 1 4.6790 1.6366 1.4552 33 1 6.2111 1.1405 0.6970 34 1 7.2294 3.6263 3.2159 35 1 7.1936 -0.0940 -3.6228 36 1 9.7297 0.1266 -2.7693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = 126.345558 kcal Electronic energy + Delta-G solvation = -25940.871456 eV Core-core repulsion = 22044.235371 eV Total energy + Delta-G solvation = -3896.636085 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.49060 -43.53936 -40.58995 -37.94110 -36.87293 -35.52906 -34.63508 -34.51128 -33.88906 -32.68890 -30.60520 -28.99040 -26.65975 -25.56778 -25.11278 -24.60917 -22.55562 -22.40998 -20.66975 -20.14280 -19.00898 -18.44130 -18.28025 -18.12814 -17.76204 -17.09859 -16.99964 -16.34400 -15.93779 -15.61279 -15.11846 -14.95645 -14.44397 -14.27592 -14.11597 -14.02263 -13.97613 -13.58352 -13.47634 -13.46718 -13.13048 -12.93127 -12.72643 -12.48560 -12.43729 -12.16227 -12.14174 -12.10700 -11.78981 -11.65052 -11.22025 -10.89254 -10.42526 -9.68373 -9.31331 -8.06524 -6.13505 -0.36891 0.13429 0.80904 1.17423 1.37253 1.41465 1.47642 1.58532 1.68680 1.78425 1.81109 2.15830 2.27217 2.47699 2.81411 3.15279 3.27367 3.31065 3.73246 3.96873 4.07596 4.12316 4.17740 4.35918 4.55827 4.62467 4.76455 4.85133 4.90625 4.97149 5.05349 5.41503 5.44672 5.55856 5.70064 5.83903 5.99776 6.19355 6.42445 6.57278 6.90226 7.06821 7.13475 7.53127 8.99386 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.005043 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.230703 B = 5550.378897 C = 6986.218643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.120 3.880 5 N -0.584 5.584 6 C 0.248 3.752 7 C -0.539 4.539 8 H 0.040 0.960 9 C 0.048 3.952 10 N -0.890 5.890 11 Si 0.924 3.076 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.599 3.401 16 O -0.558 6.558 17 C -0.061 4.061 18 C -0.126 4.126 19 C -0.141 4.141 20 C 0.045 3.955 21 C 0.233 3.767 22 N -0.262 5.262 23 N -0.046 5.046 24 N -0.202 5.202 25 H 0.493 0.507 26 N -0.273 5.273 27 O -0.113 6.113 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.188 0.812 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -5.674 -2.158 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.072 4.072 4 C -0.004 4.004 5 N -0.312 5.312 6 C 0.128 3.872 7 C -0.578 4.578 8 H 0.059 0.941 9 C -0.154 4.154 10 N -0.528 5.528 11 Si 0.752 3.248 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.211 1.211 15 C 0.387 3.613 16 O -0.440 6.440 17 C -0.116 4.116 18 C -0.146 4.146 19 C -0.163 4.163 20 C -0.011 4.011 21 C -0.046 4.046 22 N -0.137 5.137 23 N -0.041 5.041 24 N -0.053 5.053 25 H 0.352 0.648 26 N -0.126 5.126 27 O -0.005 6.005 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.206 0.794 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.319 -5.618 -1.994 8.687 hybrid contribution 0.505 1.591 0.670 1.799 sum 6.824 -4.027 -1.324 8.034 Atomic orbital electron populations 1.81219 1.14317 1.10195 1.10998 1.29156 0.95003 0.91649 0.91281 1.19703 0.80156 1.00889 1.06445 1.21329 0.78944 0.97079 1.03068 1.48098 1.06818 1.61191 1.15123 1.19407 0.91889 0.94119 0.81767 1.21399 1.36598 0.96831 1.02996 0.94124 1.25135 0.95489 0.99634 0.95167 1.69939 1.38918 1.36844 1.07087 0.86109 0.77939 0.83343 0.77456 1.20345 1.20826 1.21083 1.16707 0.83715 0.77453 0.83396 1.90791 1.67743 1.53559 1.31941 1.22677 0.91882 1.07254 0.89804 1.22343 0.90950 1.01187 1.00147 1.21961 0.99391 1.02009 0.92889 1.18738 0.81149 1.06619 0.94614 1.22079 0.91340 1.01093 0.90088 1.76068 0.99923 1.19288 1.18456 1.78774 1.20499 1.10405 0.94379 1.47814 1.00433 1.38589 1.18456 0.64785 1.75585 1.04267 1.19107 1.13631 1.84787 1.14451 1.62494 1.38778 0.85550 0.85174 0.89174 0.89362 0.94119 0.93810 0.92775 0.79440 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.22 18.54 20.01 0.37 -14.85 16 2 C 0.25 6.32 15.43 89.44 1.38 7.70 16 3 C -0.03 -0.68 6.03 28.79 0.17 -0.51 16 4 C 0.12 3.44 5.42 86.38 0.47 3.91 16 5 N -0.58 -20.90 2.48 -830.99 -2.06 -22.95 16 6 C 0.25 10.47 4.79 85.63 0.41 10.88 16 7 C -0.54 -26.20 8.47 25.60 0.22 -25.99 16 8 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 9 C 0.05 2.39 5.46 84.65 0.46 2.85 16 10 N -0.89 -44.65 13.29 21.45 0.28 -44.36 16 11 Si 0.92 40.85 29.54 68.60 2.03 42.88 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.60 22.12 7.58 86.41 0.65 22.77 16 16 O -0.56 -21.22 16.36 -4.38 -0.07 -21.29 16 17 C -0.06 -2.20 6.78 24.32 0.16 -2.04 16 18 C -0.13 -3.62 10.66 22.56 0.24 -3.38 16 19 C -0.14 -3.87 10.78 22.26 0.24 -3.63 16 20 C 0.04 1.54 7.24 24.39 0.18 1.72 16 21 C 0.23 7.88 8.20 137.06 1.12 9.01 16 22 N -0.26 -7.85 12.53 -52.44 -0.66 -8.51 16 23 N -0.05 -1.19 13.46 37.02 0.50 -0.69 16 24 N -0.20 -4.93 7.90 37.02 0.29 -4.64 16 25 H 0.49 7.29 8.96 -347.50 -3.11 4.18 16 26 N -0.27 -9.30 12.41 -52.39 -0.65 -9.95 16 27 O -0.11 -4.50 6.63 -9.31 -0.06 -4.56 16 28 H 0.13 2.45 8.14 -2.39 -0.02 2.44 16 29 H 0.13 2.54 8.14 -2.39 -0.02 2.53 16 30 H 0.09 2.60 8.11 -2.39 -0.02 2.59 16 31 H 0.09 2.57 7.23 -2.39 -0.02 2.55 16 32 H 0.04 1.73 8.02 -2.38 -0.02 1.71 16 33 H 0.04 2.01 5.36 -2.39 -0.01 2.00 16 34 H 0.26 12.70 8.31 -92.70 -0.77 11.93 16 35 H 0.19 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.19 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -64.29 337.48 3.74 -60.54 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -1.94 Total: 5.09 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 5.71 Total: 23.30 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -1.92 Total: -105.95 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.13 Total: -25.86 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -64.29 3.74 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.887 kcal (2) G-P(sol) polarization free energy of solvation -64.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds