Wall clock time and date at job start Tue Mar 31 2020 10:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47100 * 239.99830 * 3 2 1 5 5 H 1.48500 * 109.47037 * 119.99960 * 3 2 1 6 6 H 1.48504 * 109.47328 * 359.97438 * 3 2 1 7 7 C 1.37875 * 120.00346 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.84522 * 355.44853 * 7 2 1 9 9 C 1.52798 * 108.75949 * 128.69299 * 8 7 2 10 10 C 1.52959 * 109.48907 * 54.38691 * 9 8 7 11 11 H 1.09007 * 109.35473 * 56.60243 * 10 9 8 12 12 C 1.52993 * 109.41759 * 176.42369 * 10 9 8 13 13 O 1.45201 * 109.47312 * 295.36035 * 12 10 9 14 14 C 1.34232 * 116.99753 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99913 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99598 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46794 * 180.02562 * 16 14 13 18 18 S 1.81399 * 109.47059 * 180.02562 * 17 16 14 19 19 C 1.81397 * 103.00144 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47481 * 179.97438 * 19 18 17 21 21 O 1.20826 * 119.99877 * 0.02562 * 20 19 18 22 22 O 1.34223 * 120.00460 * 180.02562 * 20 19 18 23 23 C 1.52958 * 109.81802 * 296.53672 * 10 9 8 24 24 C 1.51260 * 120.85126 * 175.17126 * 7 2 1 25 25 H 0.97003 * 119.99476 * 185.47496 * 1 2 3 26 26 H 1.09002 * 109.62647 * 248.34019 * 8 7 2 27 27 H 1.08993 * 109.62874 * 8.91864 * 8 7 2 28 28 H 1.09003 * 109.33627 * 294.45047 * 9 8 7 29 29 H 1.09003 * 109.55099 * 174.45947 * 9 8 7 30 30 H 1.09002 * 109.46545 * 55.35715 * 12 10 9 31 31 H 1.09003 * 109.47491 * 175.35234 * 12 10 9 32 32 H 1.08997 * 109.46945 * 299.99788 * 16 14 13 33 33 H 1.08989 * 109.46859 * 60.00256 * 16 14 13 34 34 H 1.09004 * 109.46952 * 299.99764 * 17 16 14 35 35 H 1.08993 * 109.47728 * 59.99767 * 17 16 14 36 36 H 1.09006 * 109.46898 * 300.00233 * 19 18 17 37 37 H 1.09003 * 109.47210 * 59.99729 * 19 18 17 38 38 H 0.96700 * 117.00042 * 180.02562 * 22 20 19 39 39 H 1.08997 * 109.48404 * 303.61411 * 23 10 9 40 40 H 1.08998 * 109.49544 * 183.57672 * 23 10 9 41 41 H 1.09004 * 109.63020 * 351.08403 * 24 7 2 42 42 H 1.09004 * 109.62648 * 111.46597 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0046 -1.1940 -0.0005 8 6 1.2713 -2.5131 0.1019 9 6 1.7441 -3.4272 -1.0275 10 6 3.2683 -3.5475 -0.9824 11 1 3.5731 -3.9116 -0.0012 12 6 3.7327 -4.5325 -2.0570 13 8 3.2256 -5.8581 -1.7503 14 6 3.5452 -6.8449 -2.6023 15 8 4.2257 -6.6088 -3.5723 16 6 3.0551 -8.2473 -2.3487 17 6 3.5572 -9.1716 -3.4598 18 16 2.9667 -10.8596 -3.1551 19 6 3.6517 -11.7902 -4.5533 20 6 3.2435 -13.2366 -4.4425 21 8 2.5600 -13.6020 -3.5155 22 8 3.6390 -14.1189 -5.3734 23 6 3.9042 -2.1799 -1.2372 24 6 3.5131 -1.2186 -0.1099 25 1 -0.4849 -0.8363 0.0802 26 1 1.4898 -2.9799 1.0624 27 1 0.1985 -2.3438 0.0096 28 1 1.4411 -3.0040 -1.9852 29 1 1.2978 -4.4146 -0.9086 30 1 3.3548 -4.2148 -3.0288 31 1 4.8222 -4.5569 -2.0812 32 1 3.4334 -8.5962 -1.3878 33 1 1.9653 -8.2543 -2.3345 34 1 3.1793 -8.8229 -4.4210 35 1 4.6470 -9.1646 -3.4737 36 1 3.2715 -11.3755 -5.4870 37 1 4.7393 -11.7180 -4.5400 38 1 3.3519 -15.0353 -5.2598 39 1 3.5500 -1.7862 -2.1899 40 1 4.9889 -2.2830 -1.2671 41 1 3.8801 -0.2179 -0.3382 42 1 3.9429 -1.5601 0.8319 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608190744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:19 Heat of formation + Delta-G solvation = -205.662880 kcal Electronic energy + Delta-G solvation = -23142.322249 eV Core-core repulsion = 19405.687990 eV Total energy + Delta-G solvation = -3736.634259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71034 -40.49446 -37.61177 -36.72489 -36.16157 -33.47704 -32.78310 -31.08551 -29.89360 -29.10765 -26.10040 -24.37173 -22.61231 -21.93324 -21.10787 -20.52032 -19.25307 -18.73372 -17.91524 -17.19324 -16.92831 -16.71991 -16.50591 -16.40114 -16.20339 -15.08607 -14.51150 -14.02819 -13.83426 -13.80053 -13.70782 -13.31085 -12.95361 -12.86927 -12.73538 -12.44690 -12.11934 -11.97458 -11.84344 -11.68163 -11.25341 -11.24260 -11.05688 -10.70367 -10.60575 -10.51587 -10.37525 -10.11647 -10.05969 -9.92608 -9.53879 -9.08626 -8.48813 -8.25770 -8.21027 -6.41963 -4.00564 0.66711 1.57389 1.86107 2.12660 2.45650 2.79200 3.40160 3.41664 3.61545 4.20123 4.28189 4.44791 4.47771 4.50151 4.63816 4.71362 5.06741 5.16488 5.20544 5.27725 5.34825 5.40629 5.58631 5.86944 5.87769 5.95331 6.20988 6.43240 6.52377 6.62598 6.72582 6.83615 6.94543 7.01222 7.09767 7.24786 7.31316 7.36057 7.61441 7.72328 8.08498 8.33033 8.89164 9.62200 10.95830 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.044406 B = 0.001852 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.391690 B =15112.995526 C =15491.391674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 1.062 2.938 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.568 4.568 8 C 0.000 4.000 9 C -0.100 4.100 10 C -0.071 4.071 11 H 0.070 0.930 12 C 0.073 3.927 13 O -0.347 6.347 14 C 0.466 3.534 15 O -0.516 6.516 16 C -0.100 4.100 17 C -0.093 4.093 18 S -0.172 6.172 19 C -0.107 4.107 20 C 0.497 3.503 21 O -0.491 6.491 22 O -0.512 6.512 23 C -0.100 4.100 24 C -0.005 4.005 25 H 0.272 0.728 26 H 0.005 0.995 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.417 0.583 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -23.568 -9.685 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.891 3.109 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.587 4.587 8 C -0.037 4.037 9 C -0.138 4.138 10 C -0.090 4.090 11 H 0.088 0.912 12 C 0.000 4.000 13 O -0.263 6.263 14 C 0.307 3.693 15 O -0.405 6.405 16 C -0.138 4.138 17 C -0.242 4.242 18 S 0.055 5.945 19 C -0.255 4.255 20 C 0.337 3.663 21 O -0.378 6.378 22 O -0.325 6.325 23 C -0.138 4.138 24 C -0.042 4.042 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.277 0.723 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.070 -21.907 -9.005 25.023 hybrid contribution 0.923 -1.790 -1.113 2.301 sum 8.992 -23.697 -10.118 27.291 Atomic orbital electron populations 1.70823 1.06846 1.31107 1.45716 1.25762 0.96275 1.01852 0.93302 0.83609 0.74804 0.75612 0.76835 1.21269 1.21195 1.21345 1.21023 0.90952 0.92557 1.54123 1.19367 0.97264 0.94244 0.92837 1.21511 0.93047 0.98156 1.01065 1.21083 0.98037 0.93195 0.96664 0.91176 1.23498 0.98221 0.77701 1.00626 1.86514 1.69860 1.19271 1.50685 1.23320 0.77440 0.87933 0.80604 1.90658 1.36475 1.84274 1.29119 1.20940 1.04480 0.87786 1.00625 1.23298 1.04887 0.93571 1.02413 1.87504 1.70493 1.03775 1.32769 1.23005 1.06779 0.91879 1.03852 1.22227 0.76852 0.87909 0.79320 1.90806 1.34936 1.79559 1.32464 1.84473 1.72708 1.24136 1.51195 1.21560 0.96448 0.94482 1.01337 1.19533 0.97243 0.94178 0.93289 0.91569 0.97630 0.94618 0.93438 0.94488 0.91404 0.91773 0.86554 0.86468 0.88585 0.88626 0.85581 0.85613 0.72297 0.92709 0.94712 0.95505 0.96867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.83 13.66 55.43 0.76 -26.08 16 2 C 0.03 0.91 5.46 -17.82 -0.10 0.81 16 3 Si 1.06 24.80 27.19 -169.99 -4.62 20.17 16 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.57 -14.89 5.52 -98.92 -0.55 -15.43 16 8 C 0.00 0.01 5.93 -27.70 -0.16 -0.15 16 9 C -0.10 -2.10 5.14 -26.86 -0.14 -2.24 16 10 C -0.07 -1.34 2.33 -90.67 -0.21 -1.55 16 11 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 12 C 0.07 1.18 4.84 37.15 0.18 1.36 16 13 O -0.35 -5.29 9.68 -39.26 -0.38 -5.67 16 14 C 0.47 6.07 7.96 36.01 0.29 6.36 16 15 O -0.52 -7.84 15.73 -18.75 -0.29 -8.14 16 16 C -0.10 -0.89 5.82 -27.88 -0.16 -1.05 16 17 C -0.09 -0.73 5.23 37.16 0.19 -0.54 16 18 S -0.17 -1.44 20.88 -107.50 -2.24 -3.68 16 19 C -0.11 -0.60 6.54 36.00 0.24 -0.36 16 20 C 0.50 3.53 8.35 36.00 0.30 3.83 16 21 O -0.49 -5.33 16.62 -18.75 -0.31 -5.64 16 22 O -0.51 -2.30 13.42 -39.24 -0.53 -2.82 16 23 C -0.10 -1.98 5.22 -26.63 -0.14 -2.12 16 24 C 0.00 -0.11 5.56 -27.49 -0.15 -0.26 16 25 H 0.27 7.95 6.36 -40.82 -0.26 7.70 16 26 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.04 0.93 5.81 -51.93 -0.30 0.63 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 30 H 0.07 1.12 8.13 -51.93 -0.42 0.69 16 31 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.75 8.10 -51.92 -0.42 0.33 16 35 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.42 0.21 9.10 45.56 0.41 0.63 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.60 5.24 -51.93 -0.27 0.33 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -33.38 360.48 -8.13 -41.51 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.53 Total: -3.74 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.41 Total: -11.35 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.76 Total: -26.08 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.51 Total: -22.27 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.62 Total: 20.17 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.24 Total: -3.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.38 -8.13 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.151 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds