Wall clock time and date at job start Tue Mar 31 2020 10:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47100 * 239.99830 * 3 2 1 5 5 H 1.48500 * 109.47037 * 119.99960 * 3 2 1 6 6 H 1.48504 * 109.47328 * 359.97438 * 3 2 1 7 7 C 1.37875 * 120.00346 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.84522 * 355.44853 * 7 2 1 9 9 C 1.52798 * 108.75949 * 128.69299 * 8 7 2 10 10 C 1.52959 * 109.48907 * 54.38691 * 9 8 7 11 11 H 1.09007 * 109.35473 * 56.60243 * 10 9 8 12 12 C 1.52993 * 109.41759 * 176.42369 * 10 9 8 13 13 O 1.45201 * 109.47312 * 295.36035 * 12 10 9 14 14 C 1.34232 * 116.99753 * 179.97438 * 13 12 10 15 15 O 1.20826 * 119.99913 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99598 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46794 * 180.02562 * 16 14 13 18 18 S 1.81399 * 109.47059 * 180.02562 * 17 16 14 19 19 C 1.81397 * 103.00144 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47481 * 179.97438 * 19 18 17 21 21 O 1.20826 * 119.99877 * 0.02562 * 20 19 18 22 22 O 1.34223 * 120.00460 * 180.02562 * 20 19 18 23 23 C 1.52958 * 109.81802 * 296.53672 * 10 9 8 24 24 C 1.51260 * 120.85126 * 175.17126 * 7 2 1 25 25 H 0.97003 * 119.99476 * 185.47496 * 1 2 3 26 26 H 1.09002 * 109.62647 * 248.34019 * 8 7 2 27 27 H 1.08993 * 109.62874 * 8.91864 * 8 7 2 28 28 H 1.09003 * 109.33627 * 294.45047 * 9 8 7 29 29 H 1.09003 * 109.55099 * 174.45947 * 9 8 7 30 30 H 1.09002 * 109.46545 * 55.35715 * 12 10 9 31 31 H 1.09003 * 109.47491 * 175.35234 * 12 10 9 32 32 H 1.08997 * 109.46945 * 299.99788 * 16 14 13 33 33 H 1.08989 * 109.46859 * 60.00256 * 16 14 13 34 34 H 1.09004 * 109.46952 * 299.99764 * 17 16 14 35 35 H 1.08993 * 109.47728 * 59.99767 * 17 16 14 36 36 H 1.09006 * 109.46898 * 300.00233 * 19 18 17 37 37 H 1.09003 * 109.47210 * 59.99729 * 19 18 17 38 38 H 0.96700 * 117.00042 * 180.02562 * 22 20 19 39 39 H 1.08997 * 109.48404 * 303.61411 * 23 10 9 40 40 H 1.08998 * 109.49544 * 183.57672 * 23 10 9 41 41 H 1.09004 * 109.63020 * 351.08403 * 24 7 2 42 42 H 1.09004 * 109.62648 * 111.46597 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0046 -1.1940 -0.0005 8 6 1.2713 -2.5131 0.1019 9 6 1.7441 -3.4272 -1.0275 10 6 3.2683 -3.5475 -0.9824 11 1 3.5731 -3.9116 -0.0012 12 6 3.7327 -4.5325 -2.0570 13 8 3.2256 -5.8581 -1.7503 14 6 3.5452 -6.8449 -2.6023 15 8 4.2257 -6.6088 -3.5723 16 6 3.0551 -8.2473 -2.3487 17 6 3.5572 -9.1716 -3.4598 18 16 2.9667 -10.8596 -3.1551 19 6 3.6517 -11.7902 -4.5533 20 6 3.2435 -13.2366 -4.4425 21 8 2.5600 -13.6020 -3.5155 22 8 3.6390 -14.1189 -5.3734 23 6 3.9042 -2.1799 -1.2372 24 6 3.5131 -1.2186 -0.1099 25 1 -0.4849 -0.8363 0.0802 26 1 1.4898 -2.9799 1.0624 27 1 0.1985 -2.3438 0.0096 28 1 1.4411 -3.0040 -1.9852 29 1 1.2978 -4.4146 -0.9086 30 1 3.3548 -4.2148 -3.0288 31 1 4.8222 -4.5569 -2.0812 32 1 3.4334 -8.5962 -1.3878 33 1 1.9653 -8.2543 -2.3345 34 1 3.1793 -8.8229 -4.4210 35 1 4.6470 -9.1646 -3.4737 36 1 3.2715 -11.3755 -5.4870 37 1 4.7393 -11.7180 -4.5400 38 1 3.3519 -15.0353 -5.2598 39 1 3.5500 -1.7862 -2.1899 40 1 4.9889 -2.2830 -1.2671 41 1 3.8801 -0.2179 -0.3382 42 1 3.9429 -1.5601 0.8319 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608190744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:18 Heat of formation + Delta-G solvation = -225.592679 kcal Electronic energy + Delta-G solvation = -23143.186470 eV Core-core repulsion = 19405.687990 eV Total energy + Delta-G solvation = -3737.498480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59914 -41.23266 -39.15346 -37.49311 -37.21552 -34.74089 -34.16072 -31.65419 -31.54221 -30.84944 -27.27043 -25.63624 -23.74471 -23.17026 -22.67777 -21.65047 -20.89748 -19.23663 -18.92017 -18.53487 -17.76994 -17.73605 -17.54099 -17.22319 -16.83134 -16.29294 -15.92874 -15.62682 -15.00613 -14.81887 -14.43505 -14.31123 -14.25652 -14.09176 -13.75157 -13.65364 -13.41095 -13.29485 -12.89305 -12.76224 -12.64432 -12.52652 -12.42394 -12.05295 -11.88049 -11.83950 -11.72055 -11.63881 -11.48663 -11.29842 -11.07509 -10.91487 -10.51363 -10.20554 -8.82150 -8.56216 -6.13532 0.11542 1.06202 1.11657 1.29996 1.52237 1.58682 1.75413 1.78611 2.07651 2.57312 3.16109 3.49694 3.72764 3.82651 3.85907 3.93216 3.94910 4.11474 4.14077 4.28024 4.38623 4.43966 4.51462 4.58173 4.65229 4.68500 4.78153 4.96834 4.98670 5.09010 5.21667 5.26025 5.30458 5.39335 5.46287 5.50343 5.54577 5.77772 6.09907 6.27312 6.65542 6.78269 6.86090 7.56973 8.81277 Molecular weight = 316.12amu Principal moments of inertia in cm(-1) A = 0.044406 B = 0.001852 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.391690 B =15112.995526 C =15491.391674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.024 4.024 3 Si 1.098 2.902 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.297 1.297 7 C -0.574 4.574 8 C -0.007 4.007 9 C -0.090 4.090 10 C -0.065 4.065 11 H 0.070 0.930 12 C 0.081 3.919 13 O -0.358 6.358 14 C 0.467 3.533 15 O -0.537 6.537 16 C -0.094 4.094 17 C -0.079 4.079 18 S -0.215 6.215 19 C -0.099 4.099 20 C 0.502 3.498 21 O -0.537 6.537 22 O -0.504 6.504 23 C -0.098 4.098 24 C -0.012 4.012 25 H 0.258 0.742 26 H 0.001 0.999 27 H 0.009 0.991 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.434 0.566 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.294 -24.744 -10.830 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.221 4.221 3 Si 0.922 3.078 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.224 1.224 7 C -0.593 4.593 8 C -0.044 4.044 9 C -0.128 4.128 10 C -0.084 4.084 11 H 0.089 0.911 12 C 0.008 3.992 13 O -0.275 6.275 14 C 0.310 3.690 15 O -0.428 6.428 16 C -0.132 4.132 17 C -0.228 4.228 18 S 0.011 5.989 19 C -0.247 4.247 20 C 0.344 3.656 21 O -0.426 6.426 22 O -0.319 6.319 23 C -0.135 4.135 24 C -0.050 4.050 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.297 0.703 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 10.619 -23.128 -10.171 27.407 hybrid contribution 0.141 -1.585 -0.773 1.769 sum 10.761 -24.713 -10.943 29.091 Atomic orbital electron populations 1.70933 1.08134 1.30334 1.49294 1.27055 0.96311 1.05463 0.93270 0.83154 0.74195 0.72009 0.78444 1.18948 1.19206 1.22421 1.21647 0.93246 0.92720 1.51711 1.19411 0.95881 0.95033 0.94108 1.21354 0.95256 0.97671 0.98541 1.20940 0.95823 0.93843 0.97784 0.91131 1.23207 0.99025 0.77957 0.99053 1.86509 1.70230 1.19206 1.51520 1.24008 0.76695 0.88541 0.79729 1.90649 1.37570 1.84637 1.29917 1.21037 1.05024 0.85322 1.01851 1.23170 1.05020 0.92701 1.01872 1.87674 1.71339 1.04826 1.35070 1.23079 1.08016 0.90519 1.03061 1.22472 0.75775 0.88646 0.78718 1.90797 1.37129 1.80401 1.34321 1.84443 1.72119 1.25246 1.50055 1.21473 0.98704 0.93931 0.99427 1.19607 0.94763 0.95727 0.94894 0.93064 0.98059 0.97215 0.94783 0.93149 0.91765 0.90109 0.85035 0.85512 0.88487 0.88122 0.83421 0.83264 0.70313 0.93383 0.91202 0.94833 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 13.66 21.45 0.29 -57.60 16 2 C -0.02 -1.32 5.46 84.65 0.46 -0.86 16 3 Si 1.10 49.53 27.19 68.60 1.87 51.40 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.57 -30.15 5.52 -16.17 -0.09 -30.24 16 8 C -0.01 -0.34 5.93 29.96 0.18 -0.16 16 9 C -0.09 -3.77 5.14 30.51 0.16 -3.61 16 10 C -0.07 -2.33 2.33 -10.82 -0.03 -2.35 16 11 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 12 C 0.08 2.43 4.84 71.98 0.35 2.78 16 13 O -0.36 -10.13 9.68 -51.44 -0.50 -10.63 16 14 C 0.47 11.17 7.96 71.24 0.57 11.74 16 15 O -0.54 -15.17 15.73 21.96 0.35 -14.83 16 16 C -0.09 -1.48 5.82 29.85 0.17 -1.31 16 17 C -0.08 -1.07 5.23 71.98 0.38 -0.70 16 18 S -0.22 -3.29 20.88 -56.49 -1.18 -4.47 16 19 C -0.10 -0.88 6.54 71.24 0.47 -0.41 16 20 C 0.50 6.33 8.35 71.24 0.59 6.93 16 21 O -0.54 -11.36 16.62 21.96 0.37 -11.00 16 22 O -0.50 -3.44 13.42 -51.34 -0.69 -4.13 16 23 C -0.10 -3.60 5.22 30.66 0.16 -3.44 16 24 C -0.01 -0.54 5.56 30.10 0.17 -0.37 16 25 H 0.26 15.89 6.36 -92.71 -0.59 15.31 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.01 0.51 5.81 -2.39 -0.01 0.50 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.94 7.71 -2.39 -0.02 1.92 16 30 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 32 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.10 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.43 -0.36 9.10 -74.06 -0.67 -1.04 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.41 5.24 -2.38 -0.01 1.40 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.29 360.48 4.58 -68.71 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.54 Total: 4.54 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 3.53 Total: -22.00 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.29 Total: -57.60 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.48 Total: -40.58 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.87 Total: 51.40 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.18 Total: -4.47 kcal Total: -73.29 4.58 -68.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.881 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds