Wall clock time and date at job start Tue Mar 31 2020 11:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40042 * 119.96309 * 2 1 4 4 C 1.36466 * 119.52169 * 180.02562 * 3 2 1 5 5 C 1.40456 * 119.53061 * 0.04059 * 4 3 2 6 6 N 1.33604 * 119.22806 * 179.97438 * 5 4 3 7 7 C 1.31651 * 121.71848 * 179.70771 * 6 5 4 8 8 C 1.40252 * 119.79677 * 0.54697 * 7 6 5 9 9 C 1.46566 * 120.76117 * 179.73628 * 8 7 6 10 10 O 1.21619 * 119.99532 * 359.72782 * 9 8 7 11 11 O 1.34875 * 119.99924 * 179.44413 * 9 8 7 12 12 C 1.45202 * 116.99518 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46610 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46714 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46757 * 180.02562 * 14 13 12 16 16 H 1.07990 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99544 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00239 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99507 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47266 * 89.99921 * 19 17 15 21 21 H 1.48500 * 109.47132 * 209.99506 * 19 17 15 22 22 H 1.48498 * 109.47537 * 329.99730 * 19 17 15 23 23 C 1.41658 * 118.47904 * 359.46915 * 8 7 6 24 24 O 1.21841 * 120.61942 * 180.27372 * 23 8 7 25 25 N 1.35071 * 118.76585 * 0.24332 * 23 8 7 26 26 C 1.35324 * 119.96783 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46800 * 269.97745 * 1 2 3 28 28 H 1.09000 * 109.47570 * 29.97655 * 1 2 3 29 29 H 1.08996 * 109.47186 * 149.97725 * 1 2 3 30 30 H 1.08004 * 120.23905 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.23509 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.10218 * 180.29034 * 7 6 5 33 33 H 1.08996 * 109.47621 * 300.00225 * 12 11 9 34 34 H 1.08997 * 109.46626 * 60.00658 * 12 11 9 35 35 H 1.08996 * 109.47086 * 300.00276 * 13 12 11 36 36 H 1.09001 * 109.47050 * 60.00356 * 13 12 11 37 37 H 1.08996 * 109.47201 * 299.99755 * 14 13 12 38 38 H 1.09001 * 109.47440 * 60.00144 * 14 13 12 39 39 H 0.97000 * 119.99475 * 179.97438 * 18 17 15 40 40 H 1.08003 * 119.61438 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.2133 0.0000 4 6 3.5710 1.2027 -0.0005 5 6 4.2539 -0.0247 -0.0019 6 7 5.5899 -0.0279 -0.0030 7 6 6.2794 -1.1494 0.0014 8 6 5.6075 -2.3806 -0.0043 9 6 6.3540 -3.6419 -0.0054 10 8 7.5701 -3.6287 -0.0063 11 8 5.6922 -4.8171 0.0005 12 6 6.4962 -6.0262 -0.0016 13 6 5.5773 -7.2496 0.0051 14 6 6.4244 -8.5237 0.0035 15 6 5.5193 -9.7286 0.0095 16 1 4.4472 -9.5987 0.0143 17 6 6.0600 -10.9969 0.0098 18 7 7.3656 -11.1552 0.0044 19 14 4.9381 -12.4905 0.0179 20 1 4.6347 -12.8892 -1.3800 21 1 5.6134 -13.6130 0.7173 22 1 3.6745 -12.1567 0.7228 23 6 4.1910 -2.3770 -0.0032 24 8 3.5678 -3.4240 -0.0029 25 7 3.5439 -1.1914 -0.0017 26 6 2.1830 -1.1723 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6697 2.1505 0.0004 31 1 4.1221 2.1316 -0.0010 32 1 7.3590 -1.1216 0.0052 33 1 7.1204 -6.0461 -0.8949 34 1 7.1299 -6.0426 0.8851 35 1 4.9527 -7.2300 0.8981 36 1 4.9438 -7.2330 -0.8818 37 1 7.0492 -8.5435 -0.8893 38 1 7.0576 -8.5401 0.8906 39 1 7.7459 -12.0475 0.0050 40 1 1.6361 -2.1037 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030833441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:38 Heat of formation + Delta-G solvation = -55.831474 kcal Electronic energy + Delta-G solvation = -24956.632729 eV Core-core repulsion = 21123.344448 eV Total energy + Delta-G solvation = -3833.288281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.17212 -39.96208 -38.73372 -37.98850 -36.11110 -34.84492 -33.82768 -33.21656 -31.62773 -30.76548 -28.23731 -27.17811 -26.05380 -24.09985 -23.73127 -23.28557 -21.60862 -20.19370 -19.18956 -18.99353 -18.30090 -17.15149 -16.86967 -16.46626 -16.13055 -15.92407 -15.89553 -15.50190 -14.98149 -14.40064 -14.39496 -14.21769 -13.81130 -13.65373 -13.30826 -13.10373 -12.86870 -12.55034 -12.43222 -12.10460 -11.91402 -11.73147 -11.13206 -10.97507 -10.89284 -10.58223 -10.53051 -10.41696 -10.19332 -10.17567 -9.90306 -9.54740 -9.39189 -9.06547 -8.30742 -8.24228 -5.95705 -3.97944 -0.62561 -0.07775 1.53232 1.53854 1.85746 2.70453 3.09637 3.35785 3.36237 3.41767 3.46232 3.50267 3.66792 3.78370 3.99490 4.08279 4.32638 4.50360 4.72175 4.75362 4.91380 4.94060 5.02731 5.14889 5.22056 5.33875 5.38711 5.40026 5.53802 5.76899 5.82226 5.87733 5.90312 6.20360 6.69188 6.71684 7.02144 7.14586 7.19506 7.31178 7.71081 7.83484 8.03800 8.16937 8.46321 9.08453 9.65577 11.15901 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.002476 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.219119 B =11304.379606 C =12639.538367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C -0.017 4.017 4 C -0.138 4.138 5 C 0.402 3.598 6 N -0.550 5.550 7 C 0.266 3.734 8 C -0.348 4.348 9 C 0.532 3.468 10 O -0.524 6.524 11 O -0.333 6.333 12 C 0.068 3.932 13 C -0.106 4.106 14 C 0.024 3.976 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.522 3.478 24 O -0.474 6.474 25 N -0.423 5.423 26 C 0.106 3.894 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 32.957 0.014 35.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C -0.041 4.041 4 C -0.159 4.159 5 C 0.163 3.837 6 N -0.275 5.275 7 C 0.112 3.888 8 C -0.358 4.358 9 C 0.378 3.622 10 O -0.417 6.417 11 O -0.248 6.248 12 C -0.006 4.006 13 C -0.144 4.144 14 C -0.013 4.013 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.324 3.676 24 O -0.346 6.346 25 N -0.123 5.123 26 C -0.019 4.019 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.045 32.615 0.015 35.127 hybrid contribution -0.634 -1.668 -0.001 1.784 sum -13.680 30.947 0.013 33.836 Atomic orbital electron populations 1.20750 0.87932 1.04207 1.03591 1.19785 0.98411 0.91338 1.04359 1.21655 0.93687 0.98986 0.89783 1.21069 0.94047 0.95879 1.04865 1.20879 0.89086 0.85694 0.88003 1.69022 1.01190 1.28477 1.28786 1.23363 1.01391 0.85014 0.79036 1.20579 0.91273 0.94350 1.29549 1.19805 0.85440 0.84094 0.72896 1.90845 1.14139 1.88332 1.48339 1.86779 1.40913 1.14325 1.82789 1.23470 0.94289 0.80934 1.01877 1.21718 0.98503 0.92240 1.01951 1.19056 0.95027 0.89619 0.97611 1.21200 0.93140 0.90742 1.50588 0.92462 1.25033 0.95047 0.99136 0.95339 1.69973 1.10203 1.22480 1.50831 0.86549 0.80748 0.82360 0.78085 1.20653 1.21225 1.19844 1.17302 0.88943 0.81879 0.79517 1.91069 1.67873 1.27776 1.47922 1.44667 1.08177 1.10168 1.49273 1.22400 0.82261 1.02040 0.95181 0.90068 0.90258 0.90427 0.82533 0.81056 0.79575 0.91695 0.91685 0.92263 0.92258 0.96263 0.96248 0.92975 0.79584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.15 10.01 36.01 0.36 0.21 16 2 C -0.14 -0.51 5.85 -104.99 -0.61 -1.12 16 3 C -0.02 -0.04 9.75 -39.54 -0.39 -0.43 16 4 C -0.14 -0.61 9.95 -39.39 -0.39 -1.01 16 5 C 0.40 3.50 7.32 -155.79 -1.14 2.36 16 6 N -0.55 -5.63 10.28 -11.94 -0.12 -5.76 16 7 C 0.27 3.16 10.83 -16.87 -0.18 2.98 16 8 C -0.35 -5.29 5.92 -104.48 -0.62 -5.91 16 9 C 0.53 10.04 7.87 34.09 0.27 10.31 16 10 O -0.52 -10.48 16.19 -19.36 -0.31 -10.79 16 11 O -0.33 -6.98 8.46 -48.12 -0.41 -7.39 16 12 C 0.07 1.45 5.48 37.16 0.20 1.65 16 13 C -0.11 -2.50 5.53 -26.73 -0.15 -2.65 16 14 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 15 C -0.52 -15.40 9.11 -34.44 -0.31 -15.72 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 19 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.52 7.63 7.39 -14.82 -0.11 7.52 16 24 O -0.47 -8.43 14.84 -16.21 -0.24 -8.67 16 25 N -0.42 -4.32 2.76 -64.88 -0.18 -4.50 16 26 C 0.11 0.76 9.70 -16.69 -0.16 0.59 16 27 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.08 -0.01 8.09 -51.93 -0.42 -0.43 16 29 H 0.08 0.12 8.08 -51.93 -0.42 -0.30 16 30 H 0.16 -0.18 8.06 -52.48 -0.42 -0.60 16 31 H 0.17 0.38 8.06 -52.48 -0.42 -0.04 16 32 H 0.19 1.92 7.69 -52.49 -0.40 1.51 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.19 1.30 7.32 -52.48 -0.38 0.92 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -38.12 352.14 -8.68 -46.80 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: -4.97 Total: -6.17 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -3.47 Total: 0.88 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.43 Total: -37.35 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.96 Total: -26.85 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.12 -8.68 -46.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030833441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.028 kcal (2) G-P(sol) polarization free energy of solvation -38.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds