Wall clock time and date at job start Tue Mar 31 2020 10:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86810 * 119.99619 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47063 * 300.00000 * 3 2 1 6 6 H 1.48499 * 109.46903 * 60.00437 * 3 2 1 7 7 C 1.38806 * 120.00610 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00200 * 197.02617 * 7 2 1 9 9 N 1.36939 * 120.00016 * 17.01389 * 7 2 1 10 10 C 1.47083 * 120.87737 * 26.59451 * 9 7 2 11 11 C 1.53236 * 108.52564 * 128.78850 * 10 9 7 12 12 N 1.46901 * 109.35992 * 53.81373 * 11 10 9 13 13 C 1.38289 * 111.00382 * 172.76029 * 12 11 10 14 14 N 1.31417 * 127.39332 * 179.71185 * 13 12 11 15 15 C 1.32045 * 116.78407 * 179.78781 * 14 13 12 16 16 C 1.48363 * 121.24915 * 180.25650 * 15 14 13 17 17 C 1.39354 * 120.12330 * 359.97438 * 16 15 14 18 18 C 1.38013 * 119.87348 * 179.72736 * 17 16 15 19 19 C 1.38320 * 120.12187 * 0.54655 * 18 17 16 20 20 C 1.38320 * 120.25102 * 359.73059 * 19 18 17 21 21 C 1.38016 * 120.12159 * 359.97438 * 20 19 18 22 22 N 1.30905 * 117.49749 * 0.53125 * 15 14 13 23 23 S 1.69918 * 105.77754 * 359.72228 * 22 15 14 24 24 C 1.46897 * 111.27203 * 296.94050 * 12 11 10 25 25 C 1.47069 * 120.88667 * 206.56443 * 9 7 2 26 26 H 0.96999 * 120.00314 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.62864 * 9.07565 * 10 9 7 28 28 H 1.09003 * 109.62488 * 248.50240 * 10 9 7 29 29 H 1.09002 * 109.49687 * 173.78597 * 11 10 9 30 30 H 1.08995 * 109.49302 * 293.84578 * 11 10 9 31 31 H 1.07999 * 120.05603 * 0.02562 * 17 16 15 32 32 H 1.07999 * 119.93593 * 180.30216 * 18 17 16 33 33 H 1.08000 * 119.87108 * 179.74398 * 19 18 17 34 34 H 1.08002 * 119.94047 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.06510 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.46965 * 303.10202 * 24 12 11 37 37 H 1.09004 * 109.51606 * 183.05213 * 24 12 11 38 38 H 1.09001 * 109.63088 * 350.92237 * 25 9 7 39 39 H 1.09005 * 109.63098 * 111.49784 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0548 -1.2226 0.2733 9 7 1.3707 -2.3619 -0.3481 10 6 0.2051 -2.3416 -1.2449 11 6 0.4413 -3.3511 -2.3733 12 7 0.7567 -4.6638 -1.7942 13 6 0.8175 -5.6366 -2.7752 14 7 1.0803 -6.9144 -2.6167 15 6 1.0801 -7.6614 -3.7056 16 6 1.3586 -9.1172 -3.6402 17 6 1.6278 -9.7235 -2.4147 18 6 1.8807 -11.0791 -2.3592 19 6 1.8782 -11.8337 -3.5184 20 6 1.6173 -11.2362 -4.7383 21 6 1.3571 -9.8824 -4.8049 22 7 0.8304 -7.0682 -4.8455 23 16 0.5725 -5.4317 -4.4679 24 6 2.0036 -4.6186 -1.0189 25 6 1.8314 -3.6610 0.1649 26 1 -0.4850 0.8400 -0.0004 27 1 0.0843 -1.3434 -1.6659 28 1 -0.6902 -2.6178 -0.6879 29 1 -0.4574 -3.4298 -2.9850 30 1 1.2742 -3.0169 -2.9918 31 1 1.6339 -9.1343 -1.5096 32 1 2.0846 -11.5508 -1.4093 33 1 2.0807 -12.8935 -3.4707 34 1 1.6162 -11.8303 -5.6402 35 1 1.1531 -9.4169 -5.7578 36 1 2.8151 -4.2669 -1.6561 37 1 2.2385 -5.6165 -0.6485 38 1 2.7859 -3.5352 0.6760 39 1 1.0924 -4.0641 0.8575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123361663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:25 Heat of formation + Delta-G solvation = 120.749138 kcal Electronic energy + Delta-G solvation = -23035.701698 eV Core-core repulsion = 19685.116149 eV Total energy + Delta-G solvation = -3350.585549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48692 -39.11313 -38.20481 -34.89510 -32.33893 -31.37287 -31.24586 -30.61817 -30.19905 -27.22789 -25.06998 -23.55240 -23.17940 -22.67547 -21.83395 -19.73123 -19.66020 -18.63103 -17.28788 -17.03538 -16.16807 -15.60029 -15.48740 -14.88313 -14.72095 -14.50259 -14.14938 -14.00108 -13.68305 -13.56869 -13.38407 -13.13925 -12.72301 -12.16835 -11.95651 -11.62154 -11.45592 -11.36350 -11.21251 -10.90332 -10.81969 -10.67845 -10.62107 -10.37161 -10.01686 -9.96934 -9.77275 -9.60486 -9.12223 -8.81856 -8.63226 -8.16583 -6.91738 -5.95477 -3.38145 0.33665 1.05767 1.22126 1.23714 1.75140 2.73694 3.16503 3.29185 3.37807 3.39419 3.74942 4.21952 4.36586 4.72970 4.78640 4.91980 5.07107 5.18496 5.20740 5.28553 5.37811 5.42959 5.49256 5.66576 5.70806 5.74279 5.77666 5.88533 5.91738 6.11004 6.24826 6.27842 6.30215 6.39528 6.59042 6.74560 6.78378 6.87836 7.10769 7.37291 7.64826 7.71559 8.23364 9.01474 9.63784 10.20099 11.14185 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.002854 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.880587 B = 9807.640182 C =10357.854814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.258 4.258 8 H 0.071 0.929 9 N -0.595 5.595 10 C 0.179 3.821 11 C 0.019 3.981 12 N -0.418 5.418 13 C 0.291 3.709 14 N -0.544 5.544 15 C 0.328 3.672 16 C -0.022 4.022 17 C -0.070 4.070 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.078 4.078 22 N -0.496 5.496 23 S 0.182 5.818 24 C 0.051 3.949 25 C 0.146 3.854 26 H 0.256 0.744 27 H 0.103 0.897 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -18.020 -7.602 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.109 4.109 12 N -0.137 5.137 13 C -0.088 4.088 14 N -0.273 5.273 15 C 0.041 3.959 16 C -0.027 4.027 17 C -0.091 4.091 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.147 4.147 21 C -0.098 4.098 22 N -0.328 5.328 23 S 0.321 5.679 24 C -0.077 4.077 25 C 0.019 3.981 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.929 -17.642 -8.437 19.650 hybrid contribution 0.857 0.630 0.390 1.133 sum 2.786 -17.011 -8.047 19.024 Atomic orbital electron populations 1.70003 1.05266 1.25807 1.53537 1.25060 0.95355 0.98582 1.00454 0.86191 0.79350 0.83622 0.77411 1.20185 1.21408 1.21572 1.19229 0.92782 0.84411 1.42262 0.91167 1.44178 1.34036 1.01500 1.52086 1.20946 0.89583 0.96423 0.87810 1.23549 1.00865 0.86142 1.00362 1.58029 1.33048 1.05179 1.17438 1.27363 0.93339 0.93083 0.94999 1.67356 1.27362 1.02353 1.30212 1.21473 0.95562 0.95760 0.83080 1.17781 1.03646 0.86719 0.94570 1.21357 0.95604 0.94693 0.97420 1.21132 1.01125 0.93677 0.98711 1.21308 0.98434 0.99980 0.92666 1.21074 1.01093 0.94446 0.98118 1.21259 0.97024 0.93673 0.97894 1.77537 1.29669 1.00874 1.24716 1.85091 1.67491 1.12010 1.03307 1.23005 0.85871 1.02148 0.96720 1.21080 0.99058 0.86060 0.91931 0.93360 0.87872 0.94592 0.90307 0.92356 0.84427 0.85436 0.85828 0.85565 0.84959 0.93039 0.89548 0.91162 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 11.15 55.49 0.62 -24.04 16 2 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 3 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.26 -6.60 9.63 -15.06 -0.15 -6.74 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.60 -13.84 3.04 -172.02 -0.52 -14.36 16 10 C 0.18 3.93 5.42 -3.60 -0.02 3.91 16 11 C 0.02 0.34 4.75 -3.70 -0.02 0.32 16 12 N -0.42 -7.33 4.68 -174.32 -0.82 -8.15 16 13 C 0.29 4.89 7.01 -86.56 -0.61 4.28 16 14 N -0.54 -9.13 9.59 -14.52 -0.14 -9.27 16 15 C 0.33 5.24 7.44 -158.84 -1.18 4.06 16 16 C -0.02 -0.30 5.88 -104.90 -0.62 -0.92 16 17 C -0.07 -0.84 9.60 -39.25 -0.38 -1.21 16 18 C -0.13 -1.20 10.03 -39.63 -0.40 -1.60 16 19 C -0.10 -0.89 10.04 -39.52 -0.40 -1.28 16 20 C -0.13 -1.18 10.03 -39.63 -0.40 -1.58 16 21 C -0.08 -0.90 9.60 -39.25 -0.38 -1.28 16 22 N -0.50 -8.01 11.42 29.64 0.34 -7.67 16 23 S 0.18 2.82 22.12 -107.50 -2.38 0.44 16 24 C 0.05 0.87 5.54 -3.70 -0.02 0.85 16 25 C 0.15 2.83 6.69 -3.61 -0.02 2.80 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.10 2.49 6.12 -51.93 -0.32 2.18 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 30 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 31 H 0.14 1.68 7.61 -52.49 -0.40 1.28 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.52 7.62 -52.49 -0.40 1.12 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 38 H 0.07 1.29 7.95 -51.93 -0.41 0.87 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -28.69 337.14 -12.35 -41.04 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.84 Total: -0.24 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.66 Total: 1.63 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.52 Total: -63.49 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.38 Total: 0.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.69 -12.35 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123361663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.787 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds