Wall clock time and date at job start Tue Mar 31 2020 10:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86810 * 119.99619 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47063 * 300.00000 * 3 2 1 6 6 H 1.48499 * 109.46903 * 60.00437 * 3 2 1 7 7 C 1.38806 * 120.00610 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00200 * 197.02617 * 7 2 1 9 9 N 1.36939 * 120.00016 * 17.01389 * 7 2 1 10 10 C 1.47083 * 120.87737 * 26.59451 * 9 7 2 11 11 C 1.53236 * 108.52564 * 128.78850 * 10 9 7 12 12 N 1.46901 * 109.35992 * 53.81373 * 11 10 9 13 13 C 1.38289 * 111.00382 * 172.76029 * 12 11 10 14 14 N 1.31417 * 127.39332 * 179.71185 * 13 12 11 15 15 C 1.32045 * 116.78407 * 179.78781 * 14 13 12 16 16 C 1.48363 * 121.24915 * 180.25650 * 15 14 13 17 17 C 1.39354 * 120.12330 * 359.97438 * 16 15 14 18 18 C 1.38013 * 119.87348 * 179.72736 * 17 16 15 19 19 C 1.38320 * 120.12187 * 0.54655 * 18 17 16 20 20 C 1.38320 * 120.25102 * 359.73059 * 19 18 17 21 21 C 1.38016 * 120.12159 * 359.97438 * 20 19 18 22 22 N 1.30905 * 117.49749 * 0.53125 * 15 14 13 23 23 S 1.69918 * 105.77754 * 359.72228 * 22 15 14 24 24 C 1.46897 * 111.27203 * 296.94050 * 12 11 10 25 25 C 1.47069 * 120.88667 * 206.56443 * 9 7 2 26 26 H 0.96999 * 120.00314 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.62864 * 9.07565 * 10 9 7 28 28 H 1.09003 * 109.62488 * 248.50240 * 10 9 7 29 29 H 1.09002 * 109.49687 * 173.78597 * 11 10 9 30 30 H 1.08995 * 109.49302 * 293.84578 * 11 10 9 31 31 H 1.07999 * 120.05603 * 0.02562 * 17 16 15 32 32 H 1.07999 * 119.93593 * 180.30216 * 18 17 16 33 33 H 1.08000 * 119.87108 * 179.74398 * 19 18 17 34 34 H 1.08002 * 119.94047 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.06510 * 180.02562 * 21 20 19 36 36 H 1.09004 * 109.46965 * 303.10202 * 24 12 11 37 37 H 1.09004 * 109.51606 * 183.05213 * 24 12 11 38 38 H 1.09001 * 109.63088 * 350.92237 * 25 9 7 39 39 H 1.09005 * 109.63098 * 111.49784 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0548 -1.2226 0.2733 9 7 1.3707 -2.3619 -0.3481 10 6 0.2051 -2.3416 -1.2449 11 6 0.4413 -3.3511 -2.3733 12 7 0.7567 -4.6638 -1.7942 13 6 0.8175 -5.6366 -2.7752 14 7 1.0803 -6.9144 -2.6167 15 6 1.0801 -7.6614 -3.7056 16 6 1.3586 -9.1172 -3.6402 17 6 1.6278 -9.7235 -2.4147 18 6 1.8807 -11.0791 -2.3592 19 6 1.8782 -11.8337 -3.5184 20 6 1.6173 -11.2362 -4.7383 21 6 1.3571 -9.8824 -4.8049 22 7 0.8304 -7.0682 -4.8455 23 16 0.5725 -5.4317 -4.4679 24 6 2.0036 -4.6186 -1.0189 25 6 1.8314 -3.6610 0.1649 26 1 -0.4850 0.8400 -0.0004 27 1 0.0843 -1.3434 -1.6659 28 1 -0.6902 -2.6178 -0.6879 29 1 -0.4574 -3.4298 -2.9850 30 1 1.2742 -3.0169 -2.9918 31 1 1.6339 -9.1343 -1.5096 32 1 2.0846 -11.5508 -1.4093 33 1 2.0807 -12.8935 -3.4707 34 1 1.6162 -11.8303 -5.6402 35 1 1.1531 -9.4169 -5.7578 36 1 2.8151 -4.2669 -1.6561 37 1 2.2385 -5.6165 -0.6485 38 1 2.7859 -3.5352 0.6760 39 1 1.0924 -4.0641 0.8575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123361663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:24 Heat of formation + Delta-G solvation = 105.656237 kcal Electronic energy + Delta-G solvation = -23036.356176 eV Core-core repulsion = 19685.116149 eV Total energy + Delta-G solvation = -3351.240027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68793 -40.29983 -39.33700 -36.57123 -33.80896 -32.85321 -32.07727 -31.90861 -31.49289 -28.87708 -26.36588 -25.08664 -24.74179 -23.55476 -22.91694 -21.27889 -20.85895 -19.95282 -18.87721 -18.02839 -17.62529 -16.87125 -16.67446 -16.40919 -15.90849 -15.62921 -15.54341 -15.40295 -15.23513 -14.80439 -14.64723 -14.31911 -13.67591 -13.47764 -13.32866 -13.16981 -12.97604 -12.70032 -12.42130 -12.30345 -12.21625 -12.17138 -12.03355 -11.95832 -11.75382 -11.71658 -10.91344 -10.86069 -10.62120 -9.90916 -9.89261 -9.34717 -8.80651 -7.92295 -5.37003 -0.83687 -0.13766 0.16653 0.46638 0.53488 1.48110 1.51551 1.60547 1.61997 1.86839 2.49838 2.91223 3.02910 3.25410 3.50155 3.84084 3.93604 3.98619 4.07041 4.10759 4.22369 4.27452 4.33526 4.39076 4.44741 4.55904 4.59913 4.66176 4.78682 4.96102 4.99944 5.13275 5.19731 5.37984 5.48155 5.52966 5.53435 5.55603 5.58412 5.65780 6.00636 6.31986 6.46789 7.07849 7.75093 8.28777 9.16114 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.002854 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.880587 B = 9807.640182 C =10357.854814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.612 5.612 10 C 0.187 3.813 11 C 0.035 3.965 12 N -0.428 5.428 13 C 0.279 3.721 14 N -0.551 5.551 15 C 0.325 3.675 16 C -0.055 4.055 17 C -0.083 4.083 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.088 4.088 22 N -0.509 5.509 23 S 0.204 5.796 24 C 0.064 3.936 25 C 0.146 3.854 26 H 0.252 0.748 27 H 0.078 0.922 28 H 0.011 0.989 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -20.545 -8.396 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.222 1.222 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.061 3.939 11 C -0.093 4.093 12 N -0.147 5.147 13 C -0.099 4.099 14 N -0.280 5.280 15 C 0.038 3.962 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.145 4.145 19 C -0.112 4.112 20 C -0.144 4.144 21 C -0.109 4.109 22 N -0.341 5.341 23 S 0.343 5.657 24 C -0.065 4.065 25 C 0.020 3.980 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.029 0.971 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.176 -20.200 -9.240 22.439 hybrid contribution 0.490 1.217 0.627 1.454 sum 3.666 -18.983 -8.613 21.165 Atomic orbital electron populations 1.70144 1.06561 1.26084 1.55141 1.25757 0.96031 1.01401 1.00950 0.85225 0.78659 0.79900 0.76731 1.19104 1.21603 1.22162 1.19543 0.93094 0.85427 1.41218 0.90853 1.44427 1.34112 1.02276 1.52797 1.20657 0.88519 0.96275 0.88474 1.23236 1.01913 0.85469 0.98675 1.57940 1.33638 1.05023 1.18137 1.27231 0.94108 0.93033 0.95541 1.67389 1.27387 1.02338 1.30920 1.21932 0.94727 0.96911 0.82598 1.17969 1.06299 0.85691 0.96038 1.21399 0.96509 0.95974 0.96478 1.21463 0.99960 0.92582 1.00455 1.21760 0.96090 1.01620 0.91754 1.21437 0.99662 0.93476 0.99781 1.21345 0.97630 0.94849 0.97035 1.77526 1.30431 1.01115 1.25043 1.84941 1.67081 1.11869 1.01839 1.22822 0.85822 1.02100 0.95708 1.21162 0.99104 0.84859 0.92877 0.93829 0.90384 0.97059 0.88551 0.91910 0.85477 0.82901 0.82250 0.82715 0.85531 0.92862 0.88023 0.90109 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.39 11.15 21.65 0.24 -52.15 16 2 C -0.05 -2.41 4.94 84.86 0.42 -1.99 16 3 Si 0.97 42.71 29.59 68.60 2.03 44.74 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.26 -13.55 9.63 84.03 0.81 -12.74 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -28.84 3.04 -698.14 -2.12 -30.96 16 10 C 0.19 8.44 5.42 86.35 0.47 8.91 16 11 C 0.04 1.25 4.75 86.38 0.41 1.67 16 12 N -0.43 -14.88 4.68 -705.43 -3.30 -18.18 16 13 C 0.28 9.24 7.01 178.93 1.25 10.49 16 14 N -0.55 -18.30 9.59 -199.84 -1.92 -20.21 16 15 C 0.32 10.26 7.44 138.22 1.03 11.28 16 16 C -0.05 -1.45 5.88 -20.04 -0.12 -1.57 16 17 C -0.08 -1.88 9.60 22.49 0.22 -1.66 16 18 C -0.13 -2.01 10.03 22.24 0.22 -1.79 16 19 C -0.09 -1.21 10.04 22.31 0.22 -0.98 16 20 C -0.13 -1.90 10.03 22.24 0.22 -1.68 16 21 C -0.09 -1.92 9.60 22.49 0.22 -1.70 16 22 N -0.51 -16.22 11.42 -60.14 -0.69 -16.91 16 23 S 0.20 6.17 22.12 -56.49 -1.25 4.92 16 24 C 0.06 2.12 5.54 86.38 0.48 2.60 16 25 C 0.15 5.65 6.69 86.35 0.58 6.23 16 26 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.08 3.91 6.12 -2.38 -0.01 3.90 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 3.06 7.51 -2.39 -0.02 3.04 16 30 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 31 H 0.13 3.06 7.61 -2.91 -0.02 3.04 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.13 2.82 7.62 -2.91 -0.02 2.79 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 3.09 7.88 -2.39 -0.02 3.07 16 38 H 0.08 2.91 7.95 -2.39 -0.02 2.89 16 39 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -62.50 337.14 0.49 -62.01 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.06 Total: 9.68 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.43 Total: 17.06 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -7.79 Total: -138.41 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.25 Total: 4.92 kcal Total: -62.50 0.49 -62.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123361663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.667 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds