Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38138 * 119.96012 * 2 1 4 4 C 1.38849 * 119.92664 * 180.02562 * 3 2 1 5 5 N 1.39954 * 120.06744 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00091 * 324.89343 * 5 4 3 7 7 O 1.21586 * 119.99972 * 4.58541 * 6 5 4 8 8 N 1.34774 * 119.99557 * 184.58765 * 6 5 4 9 9 C 1.46502 * 120.00449 * 0.02562 * 8 6 5 10 10 C 1.46499 * 119.99678 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47396 * 90.00073 * 10 8 6 12 12 H 1.08011 * 119.99529 * 0.02562 * 11 10 8 13 13 C 1.37868 * 120.00344 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99960 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46748 * 60.00071 * 15 13 11 17 17 H 1.48494 * 109.47171 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46960 * 300.00253 * 15 13 11 19 19 C 1.38878 * 119.85953 * 0.02562 * 4 3 2 20 20 C 1.38093 * 119.93430 * 0.24481 * 19 4 3 21 21 C 1.38252 * 119.96794 * 180.02562 * 2 1 3 22 22 C 1.50698 * 119.93085 * 359.97438 * 21 2 1 23 23 F 1.39899 * 109.47633 * 179.97438 * 22 21 2 24 24 F 1.39901 * 109.46864 * 299.99801 * 22 21 2 25 25 F 1.39903 * 109.47213 * 59.99075 * 22 21 2 26 26 H 1.09001 * 109.47001 * 90.00360 * 1 2 3 27 27 H 1.09004 * 109.46959 * 209.99896 * 1 2 3 28 28 H 1.08999 * 109.47312 * 330.00207 * 1 2 3 29 29 H 1.07998 * 120.04071 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99646 * 144.89135 * 5 4 3 31 31 H 1.09002 * 109.47095 * 89.99973 * 9 8 6 32 32 H 1.09001 * 109.47040 * 209.99742 * 9 8 6 33 33 H 1.09001 * 109.46565 * 329.99947 * 9 8 6 34 34 H 1.09004 * 109.47170 * 209.99955 * 10 8 6 35 35 H 1.09001 * 109.47433 * 330.00250 * 10 8 6 36 36 H 0.97007 * 119.99621 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.03422 * 179.97438 * 19 4 3 38 38 H 1.08000 * 119.97032 * 179.72159 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5853 1.1960 -0.0005 5 7 4.2872 2.4068 0.0000 6 6 3.7989 3.4691 -0.6704 7 8 2.7093 3.4017 -1.2057 8 7 4.5184 4.6062 -0.7472 9 6 5.8315 4.6872 -0.1027 10 6 3.9878 5.7608 -1.4764 11 6 3.1908 6.6265 -0.5349 12 1 3.0900 6.3450 0.5030 13 6 2.5912 7.7783 -0.9981 14 7 2.7144 8.1214 -2.2618 15 14 1.6039 8.8518 0.1691 16 1 2.4814 9.3222 1.2709 17 1 1.0670 10.0227 -0.5697 18 1 0.4790 8.0641 0.7342 19 6 4.2761 -0.0088 -0.0016 20 6 3.5806 -1.2019 -0.0073 21 6 2.1976 -1.1977 -0.0005 22 6 1.4418 -2.5014 -0.0005 23 9 2.3489 -3.5665 -0.0017 24 9 0.6378 -2.5743 1.1421 25 9 0.6367 -2.5738 -1.1424 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6569 2.1321 -0.0004 30 1 5.1252 2.4813 0.4829 31 1 6.6014 4.3679 -0.8052 32 1 6.0230 5.7156 0.2035 33 1 5.8469 4.0384 0.7730 34 1 4.8133 6.3393 -1.8910 35 1 3.3439 5.4152 -2.2852 36 1 2.2923 8.9316 -2.5877 37 1 5.3561 -0.0128 -0.0025 38 1 4.1172 -2.1391 -0.0126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127298564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = -145.331953 kcal Electronic energy + Delta-G solvation = -26290.789032 eV Core-core repulsion = 21911.762978 eV Total energy + Delta-G solvation = -4379.026054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.25757 -47.78188 -47.66084 -40.51241 -38.85656 -35.34446 -34.76234 -32.76512 -32.48810 -30.60548 -27.87387 -27.44352 -26.16565 -25.21051 -23.19264 -22.40816 -21.31428 -19.69947 -18.53860 -18.49302 -18.28746 -17.74714 -16.87274 -16.58560 -15.45534 -15.08951 -14.79969 -14.75758 -14.65431 -14.46726 -14.22096 -14.09620 -13.85399 -13.84831 -13.69345 -13.47042 -13.17099 -13.16102 -12.88087 -12.28597 -12.25149 -12.17664 -11.97975 -11.48586 -11.37306 -11.25704 -10.98003 -10.62890 -10.31544 -10.19771 -9.74697 -9.42165 -8.82816 -8.48992 -8.29700 -7.75012 -6.09983 -4.15410 0.90982 1.26270 2.63089 2.97573 3.28242 3.33011 3.33537 3.36687 3.71807 3.80909 3.99403 4.27662 4.39153 4.43472 4.67119 4.74116 5.12799 5.17287 5.24319 5.36843 5.43139 5.52107 5.59533 5.74201 5.83547 5.91643 6.02723 6.05568 6.24859 6.27080 6.52525 6.67409 6.99461 7.24140 7.38078 7.53253 7.86535 8.15232 8.41297 8.84042 9.07023 9.50078 10.97909 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.003075 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.991620 B = 9104.934664 C = 9893.261610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.012 4.012 3 C -0.127 4.127 4 C 0.218 3.782 5 N -0.696 5.696 6 C 0.696 3.304 7 O -0.564 6.564 8 N -0.609 5.609 9 C 0.082 3.918 10 C 0.259 3.741 11 C -0.531 4.531 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.166 4.166 20 C -0.049 4.049 21 C -0.220 4.220 22 C 0.514 3.486 23 F -0.182 7.182 24 F -0.179 7.179 25 F -0.178 7.178 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.405 0.595 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.134 0.866 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -19.052 6.328 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.013 4.013 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.345 5.345 6 C 0.398 3.602 7 O -0.440 6.440 8 N -0.344 5.344 9 C -0.062 4.062 10 C 0.140 3.860 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.188 4.188 20 C -0.068 4.068 21 C -0.223 4.223 22 C 0.460 3.540 23 F -0.163 7.163 24 F -0.160 7.160 25 F -0.159 7.159 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.174 0.826 30 H 0.242 0.758 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.036 -18.808 5.739 19.897 hybrid contribution -0.059 0.543 0.853 1.013 sum 2.978 -18.265 6.593 19.645 Atomic orbital electron populations 1.21116 0.90312 1.04016 1.03654 1.19515 0.96469 0.91129 0.94161 1.21372 0.92886 0.98871 1.01605 1.17753 0.91374 0.84866 0.93951 1.43111 1.26950 1.09859 1.54608 1.15936 0.84455 0.80014 0.79797 1.90902 1.19931 1.82004 1.51123 1.47536 1.18101 1.13071 1.55700 1.21624 0.85120 1.03419 0.96021 1.19287 0.94568 0.80180 0.91938 1.21395 1.32552 1.06875 0.96123 0.92497 1.24923 0.96222 0.97581 0.95258 1.69919 1.44341 1.25149 1.13853 0.86547 0.80454 0.79678 0.80669 1.20259 1.21122 1.20151 1.20791 1.00137 0.90466 1.07357 1.20635 0.91858 0.98588 0.95715 1.19682 0.94791 0.91288 1.16525 1.18261 0.77360 0.84808 0.73617 1.93135 1.67220 1.59669 1.96269 1.93159 1.74844 1.96624 1.51358 1.93210 1.74768 1.96756 1.51185 0.89861 0.90887 0.90176 0.82568 0.75761 0.93455 0.90082 0.93143 0.94640 0.93579 0.92559 0.84843 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.98 36.01 0.32 -1.29 16 2 C -0.01 -0.16 5.84 -104.65 -0.61 -0.77 16 3 C -0.13 -2.00 8.35 -39.39 -0.33 -2.33 16 4 C 0.22 3.15 6.30 -83.69 -0.53 2.62 16 5 N -0.70 -10.36 5.22 -14.22 -0.07 -10.44 16 6 C 0.70 13.99 8.12 -86.92 -0.71 13.29 16 7 O -0.56 -13.63 13.36 5.29 0.07 -13.56 16 8 N -0.61 -12.28 2.86 -188.74 -0.54 -12.82 16 9 C 0.08 1.18 10.24 59.85 0.61 1.79 16 10 C 0.26 6.54 5.16 -5.19 -0.03 6.51 16 11 C -0.53 -14.59 9.38 -34.44 -0.32 -14.92 16 12 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.17 -1.88 9.97 -39.40 -0.39 -2.28 16 20 C -0.05 -0.54 9.42 -39.61 -0.37 -0.91 16 21 C -0.22 -2.75 5.37 -104.59 -0.56 -3.31 16 22 C 0.51 6.02 2.81 36.00 0.10 6.13 16 23 F -0.18 -2.01 15.97 2.25 0.04 -1.97 16 24 F -0.18 -2.10 15.33 2.25 0.03 -2.06 16 25 F -0.18 -2.19 16.42 2.25 0.04 -2.15 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.80 5.51 -51.93 -0.29 0.52 16 28 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.16 2.88 6.22 -52.49 -0.33 2.55 16 30 H 0.40 4.57 6.52 -40.82 -0.27 4.31 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 34 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 38 H 0.14 1.18 7.15 -52.49 -0.38 0.80 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -31.91 332.51 -6.66 -38.57 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.04 Total: 2.13 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.91 Total: 6.18 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.12 Total: -48.52 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.07 Total: -13.56 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.91 -6.66 -38.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127298564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.762 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds