Wall clock time and date at job start Tue Mar 31 2020 11:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38138 * 119.96012 * 2 1 4 4 C 1.38849 * 119.92664 * 180.02562 * 3 2 1 5 5 N 1.39954 * 120.06744 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00091 * 324.89343 * 5 4 3 7 7 O 1.21586 * 119.99972 * 4.58541 * 6 5 4 8 8 N 1.34774 * 119.99557 * 184.58765 * 6 5 4 9 9 C 1.46502 * 120.00449 * 0.02562 * 8 6 5 10 10 C 1.46499 * 119.99678 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47396 * 90.00073 * 10 8 6 12 12 H 1.08011 * 119.99529 * 0.02562 * 11 10 8 13 13 C 1.37868 * 120.00344 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99960 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46748 * 60.00071 * 15 13 11 17 17 H 1.48494 * 109.47171 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46960 * 300.00253 * 15 13 11 19 19 C 1.38878 * 119.85953 * 0.02562 * 4 3 2 20 20 C 1.38093 * 119.93430 * 0.24481 * 19 4 3 21 21 C 1.38252 * 119.96794 * 180.02562 * 2 1 3 22 22 C 1.50698 * 119.93085 * 359.97438 * 21 2 1 23 23 F 1.39899 * 109.47633 * 179.97438 * 22 21 2 24 24 F 1.39901 * 109.46864 * 299.99801 * 22 21 2 25 25 F 1.39903 * 109.47213 * 59.99075 * 22 21 2 26 26 H 1.09001 * 109.47001 * 90.00360 * 1 2 3 27 27 H 1.09004 * 109.46959 * 209.99896 * 1 2 3 28 28 H 1.08999 * 109.47312 * 330.00207 * 1 2 3 29 29 H 1.07998 * 120.04071 * 359.97438 * 3 2 1 30 30 H 0.97000 * 119.99646 * 144.89135 * 5 4 3 31 31 H 1.09002 * 109.47095 * 89.99973 * 9 8 6 32 32 H 1.09001 * 109.47040 * 209.99742 * 9 8 6 33 33 H 1.09001 * 109.46565 * 329.99947 * 9 8 6 34 34 H 1.09004 * 109.47170 * 209.99955 * 10 8 6 35 35 H 1.09001 * 109.47433 * 330.00250 * 10 8 6 36 36 H 0.97007 * 119.99621 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.03422 * 179.97438 * 19 4 3 38 38 H 1.08000 * 119.97032 * 179.72159 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5853 1.1960 -0.0005 5 7 4.2872 2.4068 0.0000 6 6 3.7989 3.4691 -0.6704 7 8 2.7093 3.4017 -1.2057 8 7 4.5184 4.6062 -0.7472 9 6 5.8315 4.6872 -0.1027 10 6 3.9878 5.7608 -1.4764 11 6 3.1908 6.6265 -0.5349 12 1 3.0900 6.3450 0.5030 13 6 2.5912 7.7783 -0.9981 14 7 2.7144 8.1214 -2.2618 15 14 1.6039 8.8518 0.1691 16 1 2.4814 9.3222 1.2709 17 1 1.0670 10.0227 -0.5697 18 1 0.4790 8.0641 0.7342 19 6 4.2761 -0.0088 -0.0016 20 6 3.5806 -1.2019 -0.0073 21 6 2.1976 -1.1977 -0.0005 22 6 1.4418 -2.5014 -0.0005 23 9 2.3489 -3.5665 -0.0017 24 9 0.6378 -2.5743 1.1421 25 9 0.6367 -2.5738 -1.1424 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6569 2.1321 -0.0004 30 1 5.1252 2.4813 0.4829 31 1 6.6014 4.3679 -0.8052 32 1 6.0230 5.7156 0.2035 33 1 5.8469 4.0384 0.7730 34 1 4.8133 6.3393 -1.8910 35 1 3.3439 5.4152 -2.2852 36 1 2.2923 8.9316 -2.5877 37 1 5.3561 -0.0128 -0.0025 38 1 4.1172 -2.1391 -0.0126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127298564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:08 Heat of formation + Delta-G solvation = -164.296028 kcal Electronic energy + Delta-G solvation = -26291.611375 eV Core-core repulsion = 21911.762978 eV Total energy + Delta-G solvation = -4379.848398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.18806 -48.69057 -48.60957 -41.81788 -40.10150 -36.86015 -36.21772 -34.70672 -33.57843 -31.79878 -29.66409 -28.45389 -27.51090 -26.46775 -24.89114 -23.53985 -22.45519 -21.11096 -19.51854 -19.47209 -19.27026 -19.04862 -18.66160 -18.16186 -16.84080 -16.74085 -16.20082 -15.81594 -15.70269 -15.67129 -15.36524 -15.10926 -14.94873 -14.85767 -14.78196 -14.66721 -14.39298 -14.33236 -14.16843 -13.89001 -13.50155 -13.32345 -13.19350 -13.15781 -12.82751 -12.57691 -12.46262 -12.35616 -12.17785 -11.76276 -11.50483 -11.02519 -10.63785 -9.86117 -9.65447 -9.21906 -8.21994 -6.36885 -0.13864 0.26315 1.37372 1.41150 1.48081 1.59985 1.71242 2.03953 2.37827 2.55328 2.75658 2.99146 3.06256 3.08353 3.44853 3.68792 3.80522 4.11270 4.25293 4.28415 4.42341 4.55500 4.61190 4.64729 4.72503 4.85908 4.95273 4.98149 5.07896 5.18723 5.22543 5.27209 5.42767 5.53320 5.75920 5.86049 6.02206 6.05125 6.71599 6.98633 7.30012 7.56124 8.84399 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.003075 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.991620 B = 9104.934664 C = 9893.261610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.152 4.152 4 C 0.195 3.805 5 N -0.674 5.674 6 C 0.692 3.308 7 O -0.616 6.616 8 N -0.617 5.617 9 C 0.076 3.924 10 C 0.276 3.724 11 C -0.544 4.544 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.146 4.146 20 C -0.041 4.041 21 C -0.223 4.223 22 C 0.519 3.481 23 F -0.173 7.173 24 F -0.179 7.179 25 F -0.182 7.182 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.424 0.576 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.000 1.000 36 H 0.267 0.733 37 H 0.173 0.827 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.558 -20.767 7.964 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 C -0.173 4.173 4 C 0.099 3.901 5 N -0.325 5.325 6 C 0.394 3.606 7 O -0.495 6.495 8 N -0.352 5.352 9 C -0.066 4.066 10 C 0.154 3.846 11 C -0.583 4.583 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.790 3.210 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.167 4.167 20 C -0.060 4.060 21 C -0.225 4.225 22 C 0.465 3.535 23 F -0.155 7.155 24 F -0.160 7.160 25 F -0.164 7.164 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.266 0.734 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.191 0.809 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.804 -20.568 7.426 22.389 hybrid contribution -0.570 0.954 0.337 1.161 sum 4.234 -19.614 7.763 21.515 Atomic orbital electron populations 1.21133 0.89808 1.04407 1.03724 1.19590 0.97096 0.91101 0.94415 1.21170 0.93970 0.98166 1.03987 1.18000 0.91044 0.85575 0.95513 1.42676 1.27375 1.08706 1.53743 1.16112 0.83822 0.80878 0.79819 1.90874 1.22289 1.83090 1.53277 1.47379 1.20087 1.11880 1.55840 1.21940 0.82655 1.04214 0.97786 1.18715 0.93501 0.81414 0.90963 1.21687 1.32993 1.07405 0.96220 0.92875 1.25811 0.97214 0.99035 0.96872 1.70037 1.45314 1.25749 1.15593 0.85503 0.78832 0.77784 0.78900 1.18453 1.20402 1.20492 1.21128 1.01917 0.88796 1.04840 1.21066 0.91238 0.99865 0.93804 1.19866 0.95758 0.90988 1.15903 1.18114 0.77301 0.84663 0.73464 1.93151 1.66886 1.59210 1.96226 1.93161 1.74869 1.96614 1.51341 1.93207 1.74916 1.96767 1.51461 0.89954 0.89744 0.90497 0.86309 0.73448 0.90703 0.90775 0.89345 0.95139 0.98171 0.92368 0.80941 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.98 71.24 0.64 -2.67 16 2 C -0.02 -0.58 5.84 -19.89 -0.12 -0.69 16 3 C -0.15 -4.94 8.35 22.39 0.19 -4.76 16 4 C 0.20 5.42 6.30 38.14 0.24 5.66 16 5 N -0.67 -19.25 5.22 -317.18 -1.65 -20.90 16 6 C 0.69 28.34 8.12 179.05 1.45 29.79 16 7 O -0.62 -31.52 13.36 -3.99 -0.05 -31.57 16 8 N -0.62 -25.12 2.86 -869.30 -2.48 -27.60 16 9 C 0.08 2.03 10.24 127.77 1.31 3.34 16 10 C 0.28 14.48 5.16 85.63 0.44 14.92 16 11 C -0.54 -30.75 9.38 25.60 0.24 -30.51 16 12 H 0.05 2.97 7.81 -2.90 -0.02 2.94 16 13 C 0.01 0.56 5.46 84.65 0.46 1.03 16 14 N -0.93 -55.34 13.29 21.44 0.28 -55.06 16 15 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 C -0.15 -2.79 9.97 22.39 0.22 -2.57 16 20 C -0.04 -0.76 9.42 22.25 0.21 -0.55 16 21 C -0.22 -5.12 5.37 -19.85 -0.11 -5.23 16 22 C 0.52 11.07 2.81 71.24 0.20 11.27 16 23 F -0.17 -3.30 15.97 44.97 0.72 -2.58 16 24 F -0.18 -3.87 15.33 44.97 0.69 -3.18 16 25 F -0.18 -4.22 16.42 44.97 0.74 -3.48 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.83 5.51 -2.39 -0.01 1.82 16 28 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 29 H 0.12 4.77 6.22 -2.91 -0.02 4.75 16 30 H 0.42 8.31 6.52 -92.71 -0.60 7.71 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.09 1.66 6.30 -2.39 -0.02 1.64 16 34 H 0.03 1.61 8.07 -2.38 -0.02 1.59 16 35 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 36 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.17 2.05 7.15 -2.91 -0.02 2.03 16 Total: -1.00 -73.32 332.51 6.17 -67.16 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.52 Total: 11.85 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 5.38 Total: 19.05 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.85 Total: -103.56 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.57 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 2.15 Total: -9.25 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.32 6.17 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127298564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.140 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds