Wall clock time and date at job start Tue Mar 31 2020 10:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48505 * 109.46643 * 239.99524 * 3 2 1 5 5 H 1.48495 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47333 * 119.99620 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46971 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47145 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.39700 * 120.00047 * 179.97438 * 12 11 10 14 14 C 1.38668 * 120.00291 * 0.02562 * 13 12 11 15 15 C 1.39476 * 119.77235 * 179.97438 * 14 13 12 16 16 C 1.47660 * 120.11371 * 180.02562 * 15 14 13 17 17 N 1.29328 * 119.99964 * 179.97438 * 16 15 14 18 18 O 1.41601 * 119.99929 * 179.97438 * 17 16 15 19 19 C 1.39653 * 119.77549 * 0.27081 * 15 14 13 20 20 C 1.37988 * 119.99838 * 359.43058 * 19 15 14 21 21 C 1.50698 * 119.88809 * 180.29708 * 20 19 15 22 22 F 1.39895 * 109.47153 * 270.29751 * 21 20 19 23 23 F 1.39897 * 109.47155 * 30.29666 * 21 20 19 24 24 F 1.39901 * 109.47104 * 150.29741 * 21 20 19 25 25 C 1.38241 * 120.22540 * 0.59384 * 20 19 15 26 26 H 0.96995 * 120.00078 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47001 * 60.00114 * 9 7 2 28 28 H 1.09000 * 109.47063 * 300.00104 * 9 7 2 29 29 H 1.08996 * 109.47341 * 59.99923 * 10 9 7 30 30 H 1.09000 * 109.47293 * 299.99940 * 10 9 7 31 31 H 1.09004 * 109.47074 * 59.99940 * 11 10 9 32 32 H 1.09001 * 109.47315 * 299.99901 * 11 10 9 33 33 H 0.96993 * 119.99560 * 359.97438 * 12 11 10 34 34 H 1.08007 * 120.11237 * 0.02562 * 14 13 12 35 35 H 1.08001 * 119.99614 * 359.97438 * 16 15 14 36 36 H 0.96700 * 114.00117 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.00460 * 179.72287 * 19 15 14 38 38 H 1.08004 * 119.88267 * 179.70044 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 7 2.4325 -6.1006 0.0030 13 6 1.9668 -7.4177 0.0034 14 6 0.6035 -7.6712 0.0014 15 6 0.1439 -8.9881 0.0012 16 6 -1.3062 -9.2666 -0.0014 17 7 -1.7299 -10.4885 -0.0021 18 8 -3.1205 -10.7556 -0.0041 19 6 1.0598 -10.0423 0.0087 20 6 2.4144 -9.7794 0.0044 21 6 3.4005 -10.9189 0.0058 22 9 3.7038 -11.2716 1.3251 23 9 2.8428 -12.0190 -0.6545 24 9 4.5703 -10.5240 -0.6521 25 6 2.8700 -8.4742 0.0051 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6047 -0.8877 31 1 0.8547 -5.0449 -0.8895 32 1 0.8527 -5.0447 0.8905 33 1 3.3860 -5.9233 0.0040 34 1 -0.1000 -6.8517 -0.0008 35 1 -2.0129 -8.4499 -0.0028 36 1 -3.3402 -11.6973 -0.0040 37 1 0.7080 -11.0633 0.0131 38 1 3.9314 -8.2748 0.0066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:30 Heat of formation + Delta-G solvation = -130.221395 kcal Electronic energy + Delta-G solvation = -24942.729589 eV Core-core repulsion = 20564.358778 eV Total energy + Delta-G solvation = -4378.370811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.31990 -47.83304 -47.78080 -39.95147 -37.32507 -36.37468 -34.18163 -33.63448 -31.90983 -31.00039 -29.17871 -26.53555 -26.10192 -24.34750 -23.28780 -21.47507 -20.87040 -20.22370 -18.65901 -18.64443 -18.19135 -17.84409 -16.56656 -16.45767 -16.13102 -15.86397 -15.04356 -15.02435 -14.66791 -14.64071 -14.48884 -14.25767 -14.14085 -14.11031 -13.93883 -13.91259 -13.74055 -13.31744 -12.85184 -12.36650 -12.14062 -12.06610 -11.82082 -11.57894 -11.04339 -10.85031 -10.80698 -10.66182 -10.32474 -10.25718 -9.82998 -9.57184 -9.23417 -9.00770 -8.44620 -7.57431 -6.09779 -4.13001 0.40319 1.02077 2.11256 2.45441 2.64300 3.27287 3.32208 3.32693 3.36229 3.44813 3.57022 3.90904 4.26685 4.38145 4.41941 4.81311 4.89914 4.94384 5.09020 5.26442 5.27403 5.40384 5.54734 5.56708 5.87398 5.93281 5.95572 6.00208 6.27477 6.40832 6.44711 6.54142 6.86033 7.20665 7.34307 7.52499 7.64386 7.66054 7.88114 8.29470 8.93199 9.51880 11.01444 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.002535 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.279279 B =11041.531397 C =12833.417271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.736 5.736 13 C 0.224 3.776 14 C -0.136 4.136 15 C -0.013 4.013 16 C 0.151 3.849 17 N -0.331 5.331 18 O -0.410 6.410 19 C -0.103 4.103 20 C -0.139 4.139 21 C 0.510 3.490 22 F -0.177 7.177 23 F -0.177 7.177 24 F -0.177 7.177 25 C -0.139 4.139 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.406 0.594 37 H 0.139 0.861 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -23.123 0.013 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.363 5.363 13 C 0.118 3.882 14 C -0.162 4.162 15 C -0.015 4.015 16 C -0.059 4.059 17 N -0.070 5.070 18 O -0.319 6.319 19 C -0.125 4.125 20 C -0.141 4.141 21 C 0.456 3.544 22 F -0.158 7.158 23 F -0.158 7.158 24 F -0.159 7.159 25 C -0.163 4.163 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.254 0.746 37 H 0.157 0.843 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.864 -23.169 0.012 23.244 hybrid contribution 0.388 0.991 -0.001 1.064 sum 2.252 -22.178 0.012 22.292 Atomic orbital electron populations 1.69940 1.06065 1.26914 1.50406 1.25016 0.94865 0.99328 0.95140 0.86639 0.79590 0.83019 0.78657 1.20207 1.21224 1.20203 1.21159 0.92996 0.90943 1.51220 0.92695 1.19020 0.93792 0.90899 0.97536 1.21858 0.99841 0.93075 1.01106 1.21740 0.92201 0.85744 1.01008 1.45090 1.09539 1.01706 1.79920 1.17499 0.91989 0.85363 0.93392 1.20946 0.94334 0.96045 1.04836 1.17876 0.89199 0.92630 1.01797 1.24209 0.94635 0.94093 0.92996 1.76347 0.95669 1.21716 1.13290 1.88457 1.15593 1.32488 1.95370 1.20747 0.90426 0.99976 1.01352 1.19483 0.93496 0.92336 1.08793 1.18287 0.80064 0.82311 0.73771 1.93225 1.93709 1.92851 1.36040 1.93191 1.85080 1.56441 1.81104 1.93192 1.50759 1.90682 1.81224 1.20422 1.00016 0.90125 1.05770 0.92809 0.96314 0.96320 0.92617 0.92623 0.92096 0.92103 0.76211 0.84078 0.85290 0.74607 0.84340 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.14 5.27 -26.74 -0.14 -2.28 16 11 C 0.12 1.63 4.91 -4.04 -0.02 1.61 16 12 N -0.74 -8.67 5.73 -58.67 -0.34 -9.00 16 13 C 0.22 2.53 6.65 -83.84 -0.56 1.97 16 14 C -0.14 -1.48 9.05 -38.96 -0.35 -1.83 16 15 C -0.01 -0.14 5.87 -105.06 -0.62 -0.76 16 16 C 0.15 1.58 10.90 -14.76 -0.16 1.42 16 17 N -0.33 -3.67 11.23 32.14 0.36 -3.31 16 18 O -0.41 -4.03 14.95 -11.47 -0.17 -4.20 16 19 C -0.10 -1.11 8.92 -39.15 -0.35 -1.46 16 20 C -0.14 -1.49 5.44 -104.71 -0.57 -2.06 16 21 C 0.51 5.39 3.36 36.00 0.12 5.51 16 22 F -0.18 -1.94 17.30 2.25 0.04 -1.90 16 23 F -0.18 -1.90 16.46 2.25 0.04 -1.87 16 24 F -0.18 -1.89 16.45 2.25 0.04 -1.85 16 25 C -0.14 -1.47 9.24 -39.30 -0.36 -1.83 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.86 7.95 -51.93 -0.41 0.44 16 32 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 33 H 0.40 4.25 8.48 -40.82 -0.35 3.90 16 34 H 0.14 1.42 6.73 -52.48 -0.35 1.06 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.41 1.98 9.28 45.56 0.42 2.40 16 37 H 0.14 1.45 7.09 -52.49 -0.37 1.08 16 38 H 0.14 1.23 7.59 -52.48 -0.40 0.84 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -30.38 347.14 -6.17 -36.55 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.53 Total: 1.77 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.56 Total: -12.16 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.76 Total: -37.48 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.17 Total: -4.20 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.38 -6.17 -36.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.670 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds