Wall clock time and date at job start Tue Mar 31 2020 11:01:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52994 * 109.47379 * 2 1
4 4 C 1.50701 * 109.47019 * 120.00403 * 2 1 3
5 5 N 1.29952 * 126.28293 * 299.96883 * 4 2 1
6 6 O 1.21297 * 110.24404 * 179.72895 * 5 4 2
7 7 C 1.33645 * 109.81817 * 0.46784 * 6 5 4
8 8 C 1.50697 * 126.55396 * 179.80219 * 7 6 5
9 9 O 1.45201 * 109.46944 * 269.68720 * 8 7 6
10 10 C 1.34804 * 116.99925 * 180.02562 * 9 8 7
11 11 O 1.21526 * 120.00158 * 359.97438 * 10 9 8
12 12 C 1.47288 * 120.00213 * 180.02562 * 10 9 8
13 13 C 1.39296 * 120.28603 * 354.83939 * 12 10 9
14 14 C 1.38205 * 120.08627 * 180.27692 * 13 12 10
15 15 C 1.38842 * 120.68093 * 359.73704 * 14 13 12
16 16 C 1.37598 * 120.58249 * 0.02562 * 15 14 13
17 17 C 1.40703 * 119.88779 * 0.02562 * 16 15 14
18 18 C 1.40861 * 120.33435 * 179.97438 * 17 16 15
19 19 H 1.07994 * 120.00819 * 145.73608 * 18 17 16
20 20 C 1.40300 * 119.99625 * 325.73972 * 18 17 16
21 21 N 1.30615 * 120.00178 * 339.67941 * 20 18 17
22 22 Si 1.86801 * 120.00058 * 159.68932 * 20 18 17
23 23 H 1.48493 * 109.47173 * 179.97438 * 22 20 18
24 24 H 1.48502 * 109.46636 * 299.99423 * 22 20 18
25 25 H 1.48494 * 109.47212 * 59.99337 * 22 20 18
26 26 N 1.31131 * 106.89247 * 359.54019 * 7 6 5
27 27 H 1.09004 * 109.46711 * 300.00466 * 1 2 3
28 28 H 1.09006 * 109.46975 * 59.99570 * 1 2 3
29 29 H 1.08991 * 109.47335 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.46711 * 239.99534 * 2 1 3
31 31 H 1.08994 * 109.47613 * 60.00083 * 3 2 1
32 32 H 1.09000 * 109.46860 * 180.02562 * 3 2 1
33 33 H 1.09009 * 109.47203 * 299.99686 * 3 2 1
34 34 H 1.08999 * 109.46912 * 149.69126 * 8 7 6
35 35 H 1.09000 * 109.47278 * 29.68638 * 8 7 6
36 36 H 1.08000 * 119.95653 * 0.02562 * 13 12 10
37 37 H 1.07997 * 119.65882 * 179.75950 * 14 13 12
38 38 H 1.07994 * 119.70815 * 180.02562 * 15 14 13
39 39 H 1.07997 * 120.05357 * 180.02562 * 16 15 14
40 40 H 0.97001 * 119.99911 * 355.29856 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7105 1.2304
5 7 1.7953 -0.3744 2.4632
6 8 2.3373 -1.1506 3.2215
7 6 2.9998 -2.0780 2.5234
8 6 3.8068 -3.2191 3.0870
9 8 5.1838 -2.7953 3.2674
10 6 6.0438 -3.7054 3.7666
11 8 5.6534 -4.8223 4.0439
12 6 7.4566 -3.3458 3.9771
13 6 7.9346 -2.1045 3.5637
14 6 9.2623 -1.7736 3.7581
15 6 10.1326 -2.6660 4.3695
16 6 9.6890 -3.8977 4.7930
17 6 8.3423 -4.2601 4.6063
18 6 7.8781 -5.5188 5.0358
19 1 6.8719 -5.6232 5.4137
20 6 8.7232 -6.6369 4.9726
21 7 9.7606 -6.6276 4.1791
22 14 8.3647 -8.1392 6.0234
23 1 9.3982 -9.1758 5.7739
24 1 8.3836 -7.7558 7.4579
25 1 7.0269 -8.6803 5.6733
26 7 2.8086 -1.8085 1.2544
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8933 -0.5139 -0.8900
31 1 1.6768 1.9563 0.8899
32 1 3.1301 1.4423 -0.0005
33 1 1.6768 1.9563 -0.8901
34 1 3.7737 -4.0627 2.3976
35 1 3.3900 -3.5189 4.0485
36 1 7.2678 -1.4013 3.0870
37 1 9.6265 -0.8108 3.4314
38 1 11.1670 -2.3910 4.5139
39 1 10.3732 -4.5851 5.2680
40 1 9.9089 -5.8764 3.5835
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042619107.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:35
Heat of formation + Delta-G solvation = -10.774954 kcal
Electronic energy + Delta-G solvation = -25274.030032 eV
Core-core repulsion = 21442.695548 eV
Total energy + Delta-G solvation = -3831.334484 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-45.71746 -39.68247 -37.65215 -37.08498 -35.78789 -34.74293 -34.05699 -32.29034
-30.34552 -29.56086 -28.05585 -27.55755 -25.46009 -24.77445 -23.48882 -22.70256
-21.17880 -20.33564 -20.08111 -18.22513 -18.14760 -17.72373 -16.81755 -16.27419
-15.77709 -15.31246 -15.03905 -14.74585 -14.33511 -14.20515 -13.94571 -13.76499
-13.22662 -13.01346 -12.75575 -12.60178 -12.41529 -12.25599 -12.01345 -11.95638
-11.85360 -11.44583 -11.39845 -11.26984 -11.08703 -11.05289 -10.85359 -10.47423
-10.35166 -10.30646 -10.14142 -9.84587 -9.22138 -9.03978 -7.95553 -7.77199
-7.35483 -4.67116 0.88024 1.96933 2.00473 2.52857 2.64498 3.12028
3.21800 3.27919 3.32223 3.62053 3.63200 3.88904 3.92150 4.45803
4.54548 4.67828 4.69386 4.96441 5.13360 5.24934 5.25228 5.28597
5.42342 5.44092 5.50307 5.65287 5.78460 5.83985 5.84641 5.92927
5.95519 6.09220 6.32936 6.63511 6.81698 6.95681 7.17349 7.37585
7.45763 7.62879 7.71726 7.95441 8.01477 8.03704 8.50888 8.63472
8.79470 9.85855
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.019741 B = 0.002964 C = 0.002678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.024366 B = 9443.259234 C =10451.699752
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.004 4.004
3 C -0.146 4.146
4 C 0.173 3.827
5 N -0.377 5.377
6 O 0.087 5.913
7 C 0.192 3.808
8 C 0.162 3.838
9 O -0.364 6.364
10 C 0.509 3.491
11 O -0.508 6.508
12 C -0.254 4.254
13 C -0.022 4.022
14 C -0.259 4.259
15 C -0.069 4.069
16 C -0.199 4.199
17 C 0.122 3.878
18 C -0.462 4.462
19 H 0.106 0.894
20 C 0.032 3.968
21 N -0.781 5.781
22 Si 1.070 2.930
23 H -0.273 1.273
24 H -0.272 1.272
25 H -0.271 1.271
26 N -0.462 5.462
27 H 0.062 0.938
28 H 0.071 0.929
29 H 0.058 0.942
30 H 0.103 0.897
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.071 0.929
34 H 0.114 0.886
35 H 0.105 0.895
36 H 0.103 0.897
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.110 0.890
40 H 0.301 0.699
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.810 8.390 -4.909 15.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.024 4.024
3 C -0.204 4.204
4 C -0.100 4.100
5 N -0.083 5.083
6 O 0.027 5.973
7 C -0.029 4.029
8 C 0.086 3.914
9 O -0.283 6.283
10 C 0.360 3.640
11 O -0.398 6.398
12 C -0.257 4.257
13 C -0.040 4.040
14 C -0.278 4.278
15 C -0.088 4.088
16 C -0.218 4.218
17 C 0.117 3.883
18 C -0.488 4.488
19 H 0.123 0.877
20 C -0.191 4.191
21 N -0.403 5.403
22 Si 0.893 3.107
23 H -0.197 1.197
24 H -0.197 1.197
25 H -0.196 1.196
26 N -0.197 5.197
27 H 0.082 0.918
28 H 0.090 0.910
29 H 0.077 0.923
30 H 0.121 0.879
31 H 0.082 0.918
32 H 0.079 0.921
33 H 0.090 0.910
34 H 0.132 0.868
35 H 0.123 0.877
36 H 0.121 0.879
37 H 0.115 0.885
38 H 0.115 0.885
39 H 0.128 0.872
40 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -11.762 7.165 -4.669 14.542
hybrid contribution -0.473 1.511 -0.413 1.636
sum -12.235 8.676 -5.082 15.836
Atomic orbital electron populations
1.21851 0.92850 1.02596 1.02965 1.19577 0.96376 0.95479 0.90963
1.21855 1.01746 0.93853 1.02931 1.25875 0.96740 0.92743 0.94674
1.74579 1.17886 1.12978 1.02876 1.85320 1.47493 1.29262 1.35226
1.28270 0.95133 0.93719 0.85795 1.20762 0.79993 0.88164 1.02524
1.86647 1.17614 1.45326 1.78672 1.21373 0.86292 0.82132 0.74157
1.90769 1.77943 1.21417 1.49686 1.18567 0.89237 0.99963 1.17969
1.20902 0.94917 0.94115 0.94070 1.20340 0.94113 1.00463 1.12903
1.20822 0.97608 0.94017 0.96326 1.21208 0.96428 0.96980 1.07159
1.17442 0.90472 0.92651 0.87700 1.21227 1.02770 0.92914 1.31900
0.87655 1.27348 0.91319 1.03594 0.96873 1.70392 1.23399 1.33389
1.13129 0.83550 0.77418 0.73877 0.75864 1.19735 1.19748 1.19608
1.71940 1.15800 1.14017 1.17951 0.91846 0.91019 0.92251 0.87907
0.91840 0.92080 0.91011 0.86807 0.87683 0.87906 0.88505 0.88507
0.87198 0.88565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16
2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16
3 C -0.15 -1.25 9.18 37.15 0.34 -0.91 16
4 C 0.17 2.34 6.72 -156.37 -1.05 1.29 16
5 N -0.38 -5.42 12.16 30.90 0.38 -5.05 16
6 O 0.09 1.28 11.31 18.10 0.20 1.48 16
7 C 0.19 2.84 8.15 -13.05 -0.11 2.74 16
8 C 0.16 2.44 6.10 36.00 0.22 2.66 16
9 O -0.36 -6.98 9.47 -40.78 -0.39 -7.36 16
10 C 0.51 11.52 7.85 34.41 0.27 11.79 16
11 O -0.51 -12.28 13.38 -19.28 -0.26 -12.54 16
12 C -0.25 -6.10 5.92 -104.39 -0.62 -6.72 16
13 C -0.02 -0.47 9.60 -39.20 -0.38 -0.84 16
14 C -0.26 -5.37 10.03 -39.37 -0.39 -5.77 16
15 C -0.07 -1.47 10.01 -39.59 -0.40 -1.86 16
16 C -0.20 -4.72 7.90 -38.88 -0.31 -5.03 16
17 C 0.12 3.09 5.16 -106.54 -0.55 2.54 16
18 C -0.46 -11.95 7.62 -37.81 -0.29 -12.24 16
19 H 0.11 2.79 5.99 -52.49 -0.31 2.48 16
20 C 0.03 0.78 5.01 -17.29 -0.09 0.69 16
21 N -0.78 -19.85 12.60 55.57 0.70 -19.15 16
22 Si 1.07 21.09 29.98 -169.99 -5.10 15.99 16
23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16
25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16
26 N -0.46 -7.03 11.55 -9.87 -0.11 -7.14 16
27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16
34 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16
35 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16
36 H 0.10 2.03 7.61 -52.49 -0.40 1.64 16
37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16
38 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16
39 H 0.11 2.63 6.99 -52.49 -0.37 2.26 16
40 H 0.30 7.82 6.62 -40.82 -0.27 7.55 16
LS Contribution 350.18 15.07 5.28 5.28
Total: -1.00 -28.51 350.18 -7.41 -35.92
By element:
Atomic # 1 Polarization: 10.20 SS G_CDS: -4.80 Total: 5.41 kcal
Atomic # 6 Polarization: -9.52 SS G_CDS: -3.32 Total: -12.84 kcal
Atomic # 7 Polarization: -32.30 SS G_CDS: 0.96 Total: -31.34 kcal
Atomic # 8 Polarization: -17.98 SS G_CDS: -0.44 Total: -18.42 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.10 Total: 15.99 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -28.51 -7.41 -35.92 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042619107.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.144 kcal
(2) G-P(sol) polarization free energy of solvation -28.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds