Wall clock time and date at job start Tue Mar 31 2020 11:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47379 * 2 1 4 4 C 1.50701 * 109.47019 * 120.00403 * 2 1 3 5 5 N 1.29952 * 126.28293 * 299.96883 * 4 2 1 6 6 O 1.21297 * 110.24404 * 179.72895 * 5 4 2 7 7 C 1.33645 * 109.81817 * 0.46784 * 6 5 4 8 8 C 1.50697 * 126.55396 * 179.80219 * 7 6 5 9 9 O 1.45201 * 109.46944 * 269.68720 * 8 7 6 10 10 C 1.34804 * 116.99925 * 180.02562 * 9 8 7 11 11 O 1.21526 * 120.00158 * 359.97438 * 10 9 8 12 12 C 1.47288 * 120.00213 * 180.02562 * 10 9 8 13 13 C 1.39296 * 120.28603 * 354.83939 * 12 10 9 14 14 C 1.38205 * 120.08627 * 180.27692 * 13 12 10 15 15 C 1.38842 * 120.68093 * 359.73704 * 14 13 12 16 16 C 1.37598 * 120.58249 * 0.02562 * 15 14 13 17 17 C 1.40703 * 119.88779 * 0.02562 * 16 15 14 18 18 C 1.40861 * 120.33435 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00819 * 145.73608 * 18 17 16 20 20 C 1.40300 * 119.99625 * 325.73972 * 18 17 16 21 21 N 1.30615 * 120.00178 * 339.67941 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 159.68932 * 20 18 17 23 23 H 1.48493 * 109.47173 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.46636 * 299.99423 * 22 20 18 25 25 H 1.48494 * 109.47212 * 59.99337 * 22 20 18 26 26 N 1.31131 * 106.89247 * 359.54019 * 7 6 5 27 27 H 1.09004 * 109.46711 * 300.00466 * 1 2 3 28 28 H 1.09006 * 109.46975 * 59.99570 * 1 2 3 29 29 H 1.08991 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46711 * 239.99534 * 2 1 3 31 31 H 1.08994 * 109.47613 * 60.00083 * 3 2 1 32 32 H 1.09000 * 109.46860 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.47203 * 299.99686 * 3 2 1 34 34 H 1.08999 * 109.46912 * 149.69126 * 8 7 6 35 35 H 1.09000 * 109.47278 * 29.68638 * 8 7 6 36 36 H 1.08000 * 119.95653 * 0.02562 * 13 12 10 37 37 H 1.07997 * 119.65882 * 179.75950 * 14 13 12 38 38 H 1.07994 * 119.70815 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.05357 * 180.02562 * 16 15 14 40 40 H 0.97001 * 119.99911 * 355.29856 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7953 -0.3744 2.4632 6 8 2.3373 -1.1506 3.2215 7 6 2.9998 -2.0780 2.5234 8 6 3.8068 -3.2191 3.0870 9 8 5.1838 -2.7953 3.2674 10 6 6.0438 -3.7054 3.7666 11 8 5.6534 -4.8223 4.0439 12 6 7.4566 -3.3458 3.9771 13 6 7.9346 -2.1045 3.5637 14 6 9.2623 -1.7736 3.7581 15 6 10.1326 -2.6660 4.3695 16 6 9.6890 -3.8977 4.7930 17 6 8.3423 -4.2601 4.6063 18 6 7.8781 -5.5188 5.0358 19 1 6.8719 -5.6232 5.4137 20 6 8.7232 -6.6369 4.9726 21 7 9.7606 -6.6276 4.1791 22 14 8.3647 -8.1392 6.0234 23 1 9.3982 -9.1758 5.7739 24 1 8.3836 -7.7558 7.4579 25 1 7.0269 -8.6803 5.6733 26 7 2.8086 -1.8085 1.2544 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 3.7737 -4.0627 2.3976 35 1 3.3900 -3.5189 4.0485 36 1 7.2678 -1.4013 3.0870 37 1 9.6265 -0.8108 3.4314 38 1 11.1670 -2.3910 4.5139 39 1 10.3732 -4.5851 5.2680 40 1 9.9089 -5.8764 3.5835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042619107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:35 Heat of formation + Delta-G solvation = -10.774954 kcal Electronic energy + Delta-G solvation = -25274.030032 eV Core-core repulsion = 21442.695548 eV Total energy + Delta-G solvation = -3831.334484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.71746 -39.68247 -37.65215 -37.08498 -35.78789 -34.74293 -34.05699 -32.29034 -30.34552 -29.56086 -28.05585 -27.55755 -25.46009 -24.77445 -23.48882 -22.70256 -21.17880 -20.33564 -20.08111 -18.22513 -18.14760 -17.72373 -16.81755 -16.27419 -15.77709 -15.31246 -15.03905 -14.74585 -14.33511 -14.20515 -13.94571 -13.76499 -13.22662 -13.01346 -12.75575 -12.60178 -12.41529 -12.25599 -12.01345 -11.95638 -11.85360 -11.44583 -11.39845 -11.26984 -11.08703 -11.05289 -10.85359 -10.47423 -10.35166 -10.30646 -10.14142 -9.84587 -9.22138 -9.03978 -7.95553 -7.77199 -7.35483 -4.67116 0.88024 1.96933 2.00473 2.52857 2.64498 3.12028 3.21800 3.27919 3.32223 3.62053 3.63200 3.88904 3.92150 4.45803 4.54548 4.67828 4.69386 4.96441 5.13360 5.24934 5.25228 5.28597 5.42342 5.44092 5.50307 5.65287 5.78460 5.83985 5.84641 5.92927 5.95519 6.09220 6.32936 6.63511 6.81698 6.95681 7.17349 7.37585 7.45763 7.62879 7.71726 7.95441 8.01477 8.03704 8.50888 8.63472 8.79470 9.85855 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.002964 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.024366 B = 9443.259234 C =10451.699752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.173 3.827 5 N -0.377 5.377 6 O 0.087 5.913 7 C 0.192 3.808 8 C 0.162 3.838 9 O -0.364 6.364 10 C 0.509 3.491 11 O -0.508 6.508 12 C -0.254 4.254 13 C -0.022 4.022 14 C -0.259 4.259 15 C -0.069 4.069 16 C -0.199 4.199 17 C 0.122 3.878 18 C -0.462 4.462 19 H 0.106 0.894 20 C 0.032 3.968 21 N -0.781 5.781 22 Si 1.070 2.930 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.271 1.271 26 N -0.462 5.462 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 8.390 -4.909 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.100 4.100 5 N -0.083 5.083 6 O 0.027 5.973 7 C -0.029 4.029 8 C 0.086 3.914 9 O -0.283 6.283 10 C 0.360 3.640 11 O -0.398 6.398 12 C -0.257 4.257 13 C -0.040 4.040 14 C -0.278 4.278 15 C -0.088 4.088 16 C -0.218 4.218 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.123 0.877 20 C -0.191 4.191 21 N -0.403 5.403 22 Si 0.893 3.107 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.196 1.196 26 N -0.197 5.197 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.762 7.165 -4.669 14.542 hybrid contribution -0.473 1.511 -0.413 1.636 sum -12.235 8.676 -5.082 15.836 Atomic orbital electron populations 1.21851 0.92850 1.02596 1.02965 1.19577 0.96376 0.95479 0.90963 1.21855 1.01746 0.93853 1.02931 1.25875 0.96740 0.92743 0.94674 1.74579 1.17886 1.12978 1.02876 1.85320 1.47493 1.29262 1.35226 1.28270 0.95133 0.93719 0.85795 1.20762 0.79993 0.88164 1.02524 1.86647 1.17614 1.45326 1.78672 1.21373 0.86292 0.82132 0.74157 1.90769 1.77943 1.21417 1.49686 1.18567 0.89237 0.99963 1.17969 1.20902 0.94917 0.94115 0.94070 1.20340 0.94113 1.00463 1.12903 1.20822 0.97608 0.94017 0.96326 1.21208 0.96428 0.96980 1.07159 1.17442 0.90472 0.92651 0.87700 1.21227 1.02770 0.92914 1.31900 0.87655 1.27348 0.91319 1.03594 0.96873 1.70392 1.23399 1.33389 1.13129 0.83550 0.77418 0.73877 0.75864 1.19735 1.19748 1.19608 1.71940 1.15800 1.14017 1.17951 0.91846 0.91019 0.92251 0.87907 0.91840 0.92080 0.91011 0.86807 0.87683 0.87906 0.88505 0.88507 0.87198 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.25 9.18 37.15 0.34 -0.91 16 4 C 0.17 2.34 6.72 -156.37 -1.05 1.29 16 5 N -0.38 -5.42 12.16 30.90 0.38 -5.05 16 6 O 0.09 1.28 11.31 18.10 0.20 1.48 16 7 C 0.19 2.84 8.15 -13.05 -0.11 2.74 16 8 C 0.16 2.44 6.10 36.00 0.22 2.66 16 9 O -0.36 -6.98 9.47 -40.78 -0.39 -7.36 16 10 C 0.51 11.52 7.85 34.41 0.27 11.79 16 11 O -0.51 -12.28 13.38 -19.28 -0.26 -12.54 16 12 C -0.25 -6.10 5.92 -104.39 -0.62 -6.72 16 13 C -0.02 -0.47 9.60 -39.20 -0.38 -0.84 16 14 C -0.26 -5.37 10.03 -39.37 -0.39 -5.77 16 15 C -0.07 -1.47 10.01 -39.59 -0.40 -1.86 16 16 C -0.20 -4.72 7.90 -38.88 -0.31 -5.03 16 17 C 0.12 3.09 5.16 -106.54 -0.55 2.54 16 18 C -0.46 -11.95 7.62 -37.81 -0.29 -12.24 16 19 H 0.11 2.79 5.99 -52.49 -0.31 2.48 16 20 C 0.03 0.78 5.01 -17.29 -0.09 0.69 16 21 N -0.78 -19.85 12.60 55.57 0.70 -19.15 16 22 Si 1.07 21.09 29.98 -169.99 -5.10 15.99 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 N -0.46 -7.03 11.55 -9.87 -0.11 -7.14 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.10 2.03 7.61 -52.49 -0.40 1.64 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.11 2.63 6.99 -52.49 -0.37 2.26 16 40 H 0.30 7.82 6.62 -40.82 -0.27 7.55 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -28.51 350.18 -7.41 -35.92 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.80 Total: 5.41 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.32 Total: -12.84 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.96 Total: -31.34 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.44 Total: -18.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.10 Total: 15.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.51 -7.41 -35.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042619107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.144 kcal (2) G-P(sol) polarization free energy of solvation -28.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds