Wall clock time and date at job start Tue Mar 31 2020 11:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47181 * 2 1 4 4 H 1.08997 * 109.47062 * 304.99560 * 3 2 1 5 5 C 1.50695 * 109.46899 * 184.99880 * 3 2 1 6 6 H 1.08006 * 120.00172 * 239.99524 * 5 3 2 7 7 C 1.37874 * 120.00303 * 59.99899 * 5 3 2 8 8 N 1.31521 * 119.99686 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00402 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46962 * 90.00078 * 9 7 5 11 11 H 1.48495 * 109.47622 * 209.99934 * 9 7 5 12 12 H 1.48503 * 109.46983 * 330.00411 * 9 7 5 13 13 N 1.46500 * 109.47301 * 64.99668 * 3 2 1 14 14 C 1.34778 * 120.00050 * 275.27746 * 13 3 2 15 15 O 1.21586 * 119.99995 * 359.72520 * 14 13 3 16 16 N 1.34773 * 119.99714 * 179.72045 * 14 13 3 17 17 C 1.40095 * 120.00065 * 174.68150 * 16 14 13 18 18 C 1.39361 * 119.90023 * 326.44163 * 17 16 14 19 19 C 1.37785 * 120.60762 * 179.73509 * 18 17 16 20 20 C 1.38929 * 120.06253 * 0.51010 * 19 18 17 21 21 O 1.35099 * 120.64311 * 179.76729 * 20 19 18 22 22 C 1.34158 * 121.49851 * 179.97438 * 21 20 19 23 23 O 1.21779 * 119.15115 * 179.97438 * 22 21 20 24 24 C 1.41169 * 121.69222 * 359.97438 * 22 21 20 25 25 C 1.35699 * 119.79071 * 0.02562 * 24 22 21 26 26 C 1.40584 * 119.54608 * 359.76115 * 20 19 18 27 27 C 1.38228 * 119.90277 * 146.70258 * 17 16 14 28 28 H 1.08997 * 109.46932 * 59.99971 * 1 2 3 29 29 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46936 * 300.00245 * 1 2 3 31 31 H 1.08991 * 109.47101 * 239.99550 * 2 1 3 32 32 H 1.09006 * 109.46685 * 119.99476 * 2 1 3 33 33 H 0.97003 * 119.99241 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99774 * 95.00031 * 13 3 2 35 35 H 0.96997 * 120.00629 * 354.69099 * 16 14 13 36 36 H 1.08003 * 119.69375 * 359.97075 * 18 17 16 37 37 H 1.07999 * 119.96644 * 180.29599 * 19 18 17 38 38 H 1.08008 * 120.10746 * 180.02562 * 24 22 21 39 39 H 1.07999 * 120.90984 * 180.02562 * 25 24 22 40 40 H 1.08002 * 120.22100 * 0.02920 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8811 -1.3817 10 1 6.5548 -0.3504 -0.7600 11 1 6.3830 0.9221 -2.8171 12 1 6.5570 2.0736 -0.6900 13 7 1.6524 2.0976 1.2518 14 6 0.4330 2.6596 1.3687 15 8 -0.3435 2.6274 0.4337 16 7 0.0744 3.2573 2.5223 17 6 -1.1470 3.9379 2.6083 18 6 -1.6506 4.6052 1.4932 19 6 -2.8530 5.2746 1.5600 20 6 -3.5712 5.2984 2.7490 21 8 -4.7491 5.9551 2.8290 22 6 -5.4570 5.9887 3.9681 23 8 -6.5135 6.5940 3.9924 24 6 -5.0087 5.3405 5.1393 25 6 -3.8331 4.6628 5.1268 26 6 -3.0648 4.6315 3.8783 27 6 -1.8466 3.9502 3.8005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8294 -0.0613 -2.9497 34 1 2.2720 2.1232 1.9978 35 1 0.6621 3.2164 3.2929 36 1 -1.0950 4.5942 0.5671 37 1 -3.2358 5.7843 0.6882 38 1 -5.5994 5.3838 6.0424 39 1 -3.4731 4.1601 6.0123 40 1 -1.4544 3.4372 4.6662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157289439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:08 Heat of formation + Delta-G solvation = -74.269363 kcal Electronic energy + Delta-G solvation = -25421.088332 eV Core-core repulsion = 21587.000524 eV Total energy + Delta-G solvation = -3834.087808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90467 -41.53124 -39.81384 -38.48942 -37.05646 -35.81225 -35.14575 -34.22620 -32.69566 -31.50026 -30.12670 -28.68899 -25.70388 -25.36855 -24.75869 -23.88376 -22.68009 -21.36040 -20.59262 -19.77810 -19.33076 -18.37075 -18.04612 -17.83576 -17.37898 -16.97603 -16.55578 -16.33290 -15.85630 -15.69218 -15.15826 -14.97059 -14.81001 -14.56204 -14.51102 -14.08917 -13.92124 -13.60242 -13.50160 -13.27208 -13.14318 -12.87025 -12.64946 -12.58783 -12.15012 -12.03933 -11.86400 -11.56678 -11.39199 -11.19800 -11.00612 -10.83262 -10.51501 -9.74810 -9.62193 -8.92856 -8.14089 -6.30598 -0.77012 -0.04982 0.54593 1.36319 1.46910 1.47838 1.57268 1.68393 1.82444 2.27102 2.43929 2.74437 3.12777 3.16213 3.39274 3.45478 3.48038 3.98500 4.06471 4.18972 4.43203 4.53709 4.57845 4.61434 4.69872 4.78858 4.86511 4.97403 5.08413 5.11761 5.14994 5.28821 5.30375 5.47457 5.57694 5.63642 5.75859 5.79223 5.89923 6.10755 6.20358 6.29255 6.41230 6.78156 7.28203 7.38046 7.73834 8.91113 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.034960 B = 0.002483 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.718327 B =11272.589982 C =11344.266121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.713 5.713 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.674 5.674 17 C 0.150 3.850 18 C -0.078 4.078 19 C -0.119 4.119 20 C 0.102 3.898 21 O -0.290 6.290 22 C 0.497 3.503 23 O -0.521 6.521 24 C -0.262 4.262 25 C 0.039 3.961 26 C -0.141 4.141 27 C -0.068 4.068 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.426 0.574 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.187 0.813 39 H 0.207 0.793 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 5.718 18.738 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.393 3.607 15 O -0.492 6.492 16 N -0.324 5.324 17 C 0.054 3.946 18 C -0.099 4.099 19 C -0.138 4.138 20 C 0.058 3.942 21 O -0.202 6.202 22 C 0.350 3.650 23 O -0.414 6.414 24 C -0.281 4.281 25 C 0.021 3.979 26 C -0.143 4.143 27 C -0.089 4.089 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.265 0.735 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.205 0.795 39 H 0.224 0.776 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.315 5.927 17.510 20.270 hybrid contribution 1.248 -0.010 -0.400 1.311 sum -7.067 5.917 17.111 19.435 Atomic orbital electron populations 1.21646 0.97001 0.98836 1.00287 1.21811 0.93670 0.99340 1.01290 1.18258 0.93339 0.88800 0.80333 0.98095 1.21564 0.91419 1.38716 1.06595 0.90839 1.25722 1.03000 0.94537 0.95144 1.70051 1.36953 1.38409 1.09899 0.85414 0.79485 0.78832 0.77001 1.19781 1.21633 1.18874 1.45425 1.13683 1.58940 1.18448 1.16176 0.82918 0.78607 0.83007 1.90914 1.52693 1.65490 1.40093 1.42481 1.20170 1.55451 1.14316 1.17592 0.87518 0.94472 0.95050 1.21214 0.95447 0.93760 0.99463 1.20432 0.94459 1.02401 0.96538 1.19259 0.83891 0.95370 0.95700 1.83467 1.31592 1.64163 1.40974 1.19987 0.82929 0.79850 0.82265 1.90937 1.22150 1.44721 1.83574 1.22668 1.01415 1.05228 0.98765 1.23293 0.89608 0.88920 0.96068 1.19123 0.97926 1.03350 0.93889 1.21103 0.91330 0.98296 0.98151 0.95673 0.94062 0.93623 0.91184 0.93932 0.92682 0.76141 0.73517 0.85326 0.83586 0.79533 0.77576 0.79471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.51 71.98 0.61 -4.51 16 2 C -0.12 -5.63 5.45 30.60 0.17 -5.47 16 3 C 0.30 14.03 2.24 44.24 0.10 14.13 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.54 -26.87 8.73 25.60 0.22 -26.65 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -50.41 11.29 21.45 0.24 -50.17 16 9 Si 0.97 40.20 29.54 68.60 2.03 42.23 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 13 N -0.71 -25.54 5.03 -461.42 -2.32 -27.86 16 14 C 0.69 23.53 6.85 179.05 1.23 24.75 16 15 O -0.61 -25.99 11.15 -3.99 -0.04 -26.04 16 16 N -0.67 -15.02 5.35 -317.17 -1.70 -16.72 16 17 C 0.15 3.25 6.27 38.09 0.24 3.49 16 18 C -0.08 -2.07 8.63 22.43 0.19 -1.88 16 19 C -0.12 -2.89 9.99 22.33 0.22 -2.67 16 20 C 0.10 2.33 6.76 23.01 0.16 2.49 16 21 O -0.29 -7.71 9.82 14.53 0.14 -7.57 16 22 C 0.50 12.40 7.89 68.54 0.54 12.94 16 23 O -0.52 -16.79 17.91 19.02 0.34 -16.45 16 24 C -0.26 -3.72 9.94 22.40 0.22 -3.50 16 25 C 0.04 0.35 10.13 23.87 0.24 0.59 16 26 C -0.14 -2.24 5.87 -20.14 -0.12 -2.36 16 27 C -0.07 -0.93 9.74 22.64 0.22 -0.71 16 28 H 0.02 1.16 7.84 -2.39 -0.02 1.14 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.85 5.63 -2.38 -0.01 1.84 16 31 H 0.07 3.69 5.95 -2.39 -0.01 3.68 16 32 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.40 11.61 8.56 -92.70 -0.79 10.81 16 35 H 0.43 5.83 8.83 -92.71 -0.82 5.01 16 36 H 0.13 4.14 6.41 -2.91 -0.02 4.13 16 37 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.21 -0.29 8.06 -2.91 -0.02 -0.32 16 40 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -73.22 339.05 2.89 -70.33 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.50 Total: 20.33 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 4.70 Total: 11.91 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.77 Total: -94.75 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: 0.44 Total: -50.05 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -73.22 2.89 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157289439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.939 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds