Wall clock time and date at job start Tue Mar 31 2020 11:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47138 * 2 1 4 4 N 1.46502 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.99882 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.12447 * 359.72499 * 5 4 3 7 7 C 1.38173 * 120.00810 * 179.70146 * 6 5 4 8 8 C 1.38466 * 120.25153 * 0.59815 * 7 6 5 9 9 C 1.50694 * 119.87876 * 179.70418 * 8 7 6 10 10 F 1.39905 * 109.46767 * 269.97579 * 9 8 7 11 11 F 1.39907 * 109.47376 * 29.97085 * 9 8 7 12 12 F 1.39893 * 109.47390 * 149.97772 * 9 8 7 13 13 C 1.38089 * 120.24217 * 359.67806 * 8 7 6 14 14 C 1.38918 * 119.99076 * 0.02562 * 13 8 7 15 15 N 1.39478 * 120.12616 * 179.97438 * 14 13 8 16 16 C 1.34774 * 119.99635 * 325.24435 * 15 14 13 17 17 O 1.21785 * 120.00276 * 4.51397 * 16 15 14 18 18 C 1.41723 * 120.00162 * 184.51162 * 16 15 14 19 19 H 1.08007 * 119.99814 * 5.04443 * 18 16 15 20 20 C 1.40136 * 120.00134 * 185.05303 * 18 16 15 21 21 N 1.30628 * 120.00068 * 354.94525 * 20 18 16 22 22 Si 1.86802 * 120.00035 * 174.94827 * 20 18 16 23 23 H 1.48510 * 109.47175 * 94.99622 * 22 20 18 24 24 H 1.48500 * 109.47422 * 214.99683 * 22 20 18 25 25 H 1.48502 * 109.47162 * 334.99927 * 22 20 18 26 26 H 1.08993 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47175 * 299.99816 * 1 2 3 28 28 H 1.08996 * 109.47105 * 59.99797 * 1 2 3 29 29 H 1.08998 * 109.46626 * 239.99724 * 2 1 3 30 30 H 1.08996 * 109.47105 * 120.00202 * 2 1 3 31 31 H 1.08996 * 109.47288 * 300.00090 * 3 2 1 32 32 H 1.09006 * 109.47434 * 60.00027 * 3 2 1 33 33 H 0.96999 * 119.99669 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.99665 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.87490 * 180.27602 * 7 6 5 36 36 H 1.08001 * 120.00387 * 180.02562 * 13 8 7 37 37 H 0.96997 * 120.00391 * 145.25183 * 15 14 13 38 38 H 0.96999 * 119.99689 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2032 2.6516 -0.0002 6 6 3.5120 3.8548 -0.0049 7 6 4.2052 5.0500 0.0017 8 6 5.5899 5.0533 0.0007 9 6 6.3375 6.3618 0.0012 10 9 6.5682 6.7675 -1.3177 11 9 5.5772 7.3330 0.6616 12 9 7.5608 6.1997 0.6601 13 6 6.2883 3.8621 -0.0004 14 6 5.6015 2.6545 -0.0009 15 7 6.3040 1.4496 -0.0024 16 6 7.4714 1.3511 -0.6688 17 8 7.9539 2.3348 -1.2005 18 6 8.1374 0.1028 -0.7509 19 1 7.6711 -0.7853 -0.3505 20 6 9.4009 0.0210 -1.3513 21 7 9.9220 1.0737 -1.9229 22 14 10.3402 -1.5937 -1.3345 23 1 10.0833 -2.3290 -2.5989 24 1 11.7941 -1.3194 -1.2081 25 1 9.8897 -2.4164 -0.1832 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 -0.0006 34 1 2.4320 3.8570 -0.0094 35 1 3.6651 5.9852 0.0025 36 1 7.3683 3.8692 -0.0008 37 1 5.9525 0.6825 0.4759 38 1 10.7964 1.0169 -2.3388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188117268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:44 Heat of formation + Delta-G solvation = -169.647945 kcal Electronic energy + Delta-G solvation = -26442.998364 eV Core-core repulsion = 22062.917890 eV Total energy + Delta-G solvation = -4380.080474 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.63979 -47.18410 -47.07529 -39.71777 -37.36722 -36.30794 -33.84394 -33.06346 -32.31662 -29.90636 -29.17896 -26.50770 -26.26693 -24.32138 -22.90068 -21.52103 -20.91842 -19.95018 -18.23837 -17.97135 -17.75244 -17.34923 -16.72696 -15.83255 -15.64995 -15.58067 -15.08392 -14.26459 -14.12723 -14.05068 -13.85580 -13.59991 -13.44795 -13.36679 -13.27657 -13.26650 -13.06887 -12.93968 -12.69583 -12.49238 -12.06586 -12.03400 -11.47827 -11.29877 -11.21287 -11.13393 -11.06433 -10.90135 -10.65947 -10.37385 -9.96249 -9.34691 -8.90279 -7.92385 -7.66642 -6.75130 -6.40134 -4.93056 1.65329 1.90637 3.02403 3.10603 3.14131 3.22310 3.49807 3.93943 4.03719 4.30097 4.40183 4.51835 4.66694 4.71797 4.77699 4.99503 5.02375 5.25220 5.38580 5.42364 5.45273 5.52398 5.64887 5.76081 5.85833 5.92479 5.92948 6.02168 6.35271 6.47855 6.57631 6.81953 7.14422 7.21949 7.43594 7.72039 7.84357 7.99438 8.15721 8.77598 9.23454 10.35444 10.55509 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.005653 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.661443 B = 4951.939907 C = 8308.300415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.128 3.872 4 N -0.746 5.746 5 C 0.194 3.806 6 C -0.186 4.186 7 C -0.067 4.067 8 C -0.222 4.222 9 C 0.514 3.486 10 F -0.182 7.182 11 F -0.188 7.188 12 F -0.179 7.179 13 C -0.043 4.043 14 C 0.122 3.878 15 N -0.699 5.699 16 C 0.545 3.455 17 O -0.565 6.565 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.089 3.911 21 N -0.745 5.745 22 Si 0.911 3.089 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.263 1.263 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.387 0.613 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 1.081 4.953 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.003 3.997 4 N -0.378 5.378 5 C 0.089 3.911 6 C -0.209 4.209 7 C -0.087 4.087 8 C -0.226 4.226 9 C 0.460 3.540 10 F -0.163 7.163 11 F -0.170 7.170 12 F -0.160 7.160 13 C -0.066 4.066 14 C 0.021 3.979 15 N -0.344 5.344 16 C 0.354 3.646 17 O -0.448 6.448 18 C -0.575 4.575 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.372 5.372 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.187 1.187 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.174 0.826 37 H 0.220 0.780 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.264 1.851 4.426 15.049 hybrid contribution 0.562 -1.299 0.135 1.422 sum -13.702 0.551 4.562 14.452 Atomic orbital electron populations 1.21671 0.94775 1.02030 1.02093 1.21712 0.96588 0.96278 1.02948 1.21321 0.80365 0.97030 1.00979 1.44485 1.04931 1.05418 1.82947 1.17882 0.89811 0.86747 0.96666 1.20192 0.98964 0.90148 1.11625 1.20386 0.91865 0.97928 0.98554 1.19533 0.94398 0.91508 1.17157 1.18309 0.77250 0.85033 0.73418 1.93198 1.94797 1.91843 1.36480 1.93122 1.75999 1.66455 1.81379 1.93177 1.46059 1.95619 1.81158 1.21054 1.02017 0.88844 0.94653 1.17303 0.87970 0.88316 1.04310 1.43927 1.25469 1.09757 1.55282 1.17050 0.78309 0.90774 0.78455 1.90650 1.64844 1.39303 1.50013 1.19983 1.03196 0.94105 1.40190 0.91289 1.25744 0.97315 0.97486 0.92897 1.70007 1.14914 1.29110 1.23175 0.86292 0.78925 0.81882 0.79354 1.19640 1.20140 1.18683 0.92331 0.92488 0.92440 0.91211 0.91316 0.92454 0.92423 0.76528 0.85819 0.85888 0.82641 0.78019 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.14 -1.14 6.05 -26.73 -0.16 -1.30 16 3 C 0.13 1.29 4.91 -4.04 -0.02 1.27 16 4 N -0.75 -10.01 5.70 -58.44 -0.33 -10.34 16 5 C 0.19 3.23 6.68 -83.52 -0.56 2.67 16 6 C -0.19 -2.77 9.31 -39.42 -0.37 -3.14 16 7 C -0.07 -1.06 9.39 -39.52 -0.37 -1.43 16 8 C -0.22 -4.14 5.46 -104.60 -0.57 -4.71 16 9 C 0.51 9.27 3.36 36.00 0.12 9.39 16 10 F -0.18 -3.42 17.30 2.25 0.04 -3.38 16 11 F -0.19 -3.01 16.45 2.25 0.04 -2.97 16 12 F -0.18 -3.44 16.45 2.25 0.04 -3.40 16 13 C -0.04 -0.94 8.04 -39.38 -0.32 -1.25 16 14 C 0.12 2.49 6.33 -83.53 -0.53 1.96 16 15 N -0.70 -15.02 4.99 -12.29 -0.06 -15.08 16 16 C 0.55 14.68 7.41 -14.93 -0.11 14.57 16 17 O -0.56 -17.31 12.30 5.11 0.06 -17.24 16 18 C -0.54 -14.27 9.31 -37.54 -0.35 -14.62 16 19 H 0.07 1.64 7.85 -52.48 -0.41 1.23 16 20 C 0.09 2.34 5.49 -17.35 -0.10 2.25 16 21 N -0.74 -21.25 11.75 55.55 0.65 -20.60 16 22 Si 0.91 19.01 29.56 -169.99 -5.03 13.99 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 32 H 0.06 0.55 7.96 -51.93 -0.41 0.13 16 33 H 0.40 5.27 7.09 -40.82 -0.29 4.98 16 34 H 0.12 1.48 6.73 -52.48 -0.35 1.13 16 35 H 0.12 1.62 7.59 -52.49 -0.40 1.22 16 36 H 0.16 3.90 5.73 -52.49 -0.30 3.60 16 37 H 0.39 7.03 7.67 -40.82 -0.31 6.71 16 38 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -31.59 335.03 -6.64 -38.23 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.14 Total: 10.72 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.96 Total: 5.02 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.26 Total: -46.02 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.06 Total: -17.24 kcal Atomic # 9 Polarization: -9.86 SS G_CDS: 0.11 Total: -9.75 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.59 -6.64 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188117268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.415 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds