Wall clock time and date at job start Tue Mar 31 2020 11:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47138 * 2 1 4 4 N 1.46502 * 109.47125 * 180.02562 * 3 2 1 5 5 C 1.39627 * 119.99882 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.12447 * 359.72499 * 5 4 3 7 7 C 1.38173 * 120.00810 * 179.70146 * 6 5 4 8 8 C 1.38466 * 120.25153 * 0.59815 * 7 6 5 9 9 C 1.50694 * 119.87876 * 179.70418 * 8 7 6 10 10 F 1.39905 * 109.46767 * 269.97579 * 9 8 7 11 11 F 1.39907 * 109.47376 * 29.97085 * 9 8 7 12 12 F 1.39893 * 109.47390 * 149.97772 * 9 8 7 13 13 C 1.38089 * 120.24217 * 359.67806 * 8 7 6 14 14 C 1.38918 * 119.99076 * 0.02562 * 13 8 7 15 15 N 1.39478 * 120.12616 * 179.97438 * 14 13 8 16 16 C 1.34774 * 119.99635 * 325.24435 * 15 14 13 17 17 O 1.21785 * 120.00276 * 4.51397 * 16 15 14 18 18 C 1.41723 * 120.00162 * 184.51162 * 16 15 14 19 19 H 1.08007 * 119.99814 * 5.04443 * 18 16 15 20 20 C 1.40136 * 120.00134 * 185.05303 * 18 16 15 21 21 N 1.30628 * 120.00068 * 354.94525 * 20 18 16 22 22 Si 1.86802 * 120.00035 * 174.94827 * 20 18 16 23 23 H 1.48510 * 109.47175 * 94.99622 * 22 20 18 24 24 H 1.48500 * 109.47422 * 214.99683 * 22 20 18 25 25 H 1.48502 * 109.47162 * 334.99927 * 22 20 18 26 26 H 1.08993 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47175 * 299.99816 * 1 2 3 28 28 H 1.08996 * 109.47105 * 59.99797 * 1 2 3 29 29 H 1.08998 * 109.46626 * 239.99724 * 2 1 3 30 30 H 1.08996 * 109.47105 * 120.00202 * 2 1 3 31 31 H 1.08996 * 109.47288 * 300.00090 * 3 2 1 32 32 H 1.09006 * 109.47434 * 60.00027 * 3 2 1 33 33 H 0.96999 * 119.99669 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.99665 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.87490 * 180.27602 * 7 6 5 36 36 H 1.08001 * 120.00387 * 180.02562 * 13 8 7 37 37 H 0.96997 * 120.00391 * 145.25183 * 15 14 13 38 38 H 0.96999 * 119.99689 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2032 2.6516 -0.0002 6 6 3.5120 3.8548 -0.0049 7 6 4.2052 5.0500 0.0017 8 6 5.5899 5.0533 0.0007 9 6 6.3375 6.3618 0.0012 10 9 6.5682 6.7675 -1.3177 11 9 5.5772 7.3330 0.6616 12 9 7.5608 6.1997 0.6601 13 6 6.2883 3.8621 -0.0004 14 6 5.6015 2.6545 -0.0009 15 7 6.3040 1.4496 -0.0024 16 6 7.4714 1.3511 -0.6688 17 8 7.9539 2.3348 -1.2005 18 6 8.1374 0.1028 -0.7509 19 1 7.6711 -0.7853 -0.3505 20 6 9.4009 0.0210 -1.3513 21 7 9.9220 1.0737 -1.9229 22 14 10.3402 -1.5937 -1.3345 23 1 10.0833 -2.3290 -2.5989 24 1 11.7941 -1.3194 -1.2081 25 1 9.8897 -2.4164 -0.1832 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 -0.0006 34 1 2.4320 3.8570 -0.0094 35 1 3.6651 5.9852 0.0025 36 1 7.3683 3.8692 -0.0008 37 1 5.9525 0.6825 0.4759 38 1 10.7964 1.0169 -2.3388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188117268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:44 Heat of formation + Delta-G solvation = -190.168159 kcal Electronic energy + Delta-G solvation = -26443.888188 eV Core-core repulsion = 22062.917890 eV Total energy + Delta-G solvation = -4380.970298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.09310 -48.61361 -48.56201 -41.20268 -39.11962 -37.38835 -35.48616 -34.60007 -33.87924 -31.19843 -30.71961 -28.38046 -27.34353 -25.54244 -24.28111 -22.64766 -22.17447 -21.62180 -19.85154 -19.43024 -19.24812 -18.98100 -18.06704 -17.53993 -17.05291 -16.62119 -16.36730 -15.89718 -15.53495 -15.51542 -15.29901 -15.03744 -14.87514 -14.75182 -14.72596 -14.56748 -14.38046 -14.29669 -14.19117 -13.74803 -13.31908 -13.22339 -12.83560 -12.79468 -12.70494 -12.57915 -12.26487 -12.03542 -11.90899 -11.82909 -11.21442 -11.02126 -10.74683 -9.84361 -9.26053 -8.38881 -8.17510 -6.99546 0.25852 0.48350 1.38423 1.39865 1.56422 1.78164 2.19691 2.33835 2.40802 2.68930 2.83502 3.02750 3.21881 3.53575 3.64617 3.91183 3.99082 4.13594 4.20994 4.39493 4.50068 4.57568 4.76078 4.76361 4.85883 4.94794 5.12228 5.17401 5.20534 5.22887 5.29638 5.40860 5.42985 5.71417 5.87436 6.13721 6.14432 6.48669 6.68613 6.74825 7.39827 8.39992 8.58394 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.007712 B = 0.005653 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3629.661443 B = 4951.939907 C = 8308.300415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.122 3.878 4 N -0.739 5.739 5 C 0.211 3.789 6 C -0.178 4.178 7 C -0.048 4.048 8 C -0.241 4.241 9 C 0.516 3.484 10 F -0.189 7.189 11 F -0.172 7.172 12 F -0.192 7.192 13 C -0.067 4.067 14 C 0.083 3.917 15 N -0.689 5.689 16 C 0.531 3.469 17 O -0.614 6.614 18 C -0.565 4.565 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.802 5.802 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.246 1.246 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.401 0.599 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.737 -0.223 5.651 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.001 4.001 4 N -0.369 5.369 5 C 0.103 3.897 6 C -0.201 4.201 7 C -0.067 4.067 8 C -0.245 4.245 9 C 0.462 3.538 10 F -0.170 7.170 11 F -0.153 7.153 12 F -0.173 7.173 13 C -0.090 4.090 14 C -0.017 4.017 15 N -0.335 5.335 16 C 0.340 3.660 17 O -0.501 6.501 18 C -0.600 4.600 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.430 5.430 22 Si 0.818 3.182 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.169 1.169 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.185 0.815 35 H 0.176 0.824 36 H 0.125 0.875 37 H 0.236 0.764 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.433 0.524 5.160 18.188 hybrid contribution 1.334 -0.834 -0.043 1.574 sum -16.099 -0.310 5.117 16.895 Atomic orbital electron populations 1.21655 0.93325 1.02648 1.02648 1.21685 0.97705 0.95000 1.02731 1.21615 0.77885 0.98602 1.02027 1.44748 1.06473 1.04355 1.81284 1.17947 0.88299 0.88735 0.94738 1.20648 1.00876 0.88787 1.09799 1.20822 0.90430 0.99920 0.95548 1.19572 0.95781 0.90362 1.18799 1.18286 0.76948 0.85411 0.73140 1.93179 1.94862 1.91926 1.37074 1.93144 1.75395 1.65790 1.80980 1.93148 1.47066 1.95742 1.81389 1.20727 1.00024 0.91050 0.97197 1.17474 0.89726 0.87177 1.07358 1.43354 1.24370 1.10968 1.54826 1.17408 0.79560 0.90567 0.78465 1.90620 1.66652 1.40730 1.52090 1.20530 1.04052 0.94789 1.40598 0.89018 1.27009 0.98186 1.01780 0.91577 1.70178 1.15725 1.32375 1.24742 0.84978 0.76864 0.76196 0.80125 1.18610 1.19876 1.16861 0.91776 0.91669 0.92142 0.91960 0.91117 0.91729 0.90727 0.76562 0.81548 0.82373 0.87492 0.76358 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.81 6.05 30.59 0.19 -1.63 16 3 C 0.12 2.00 4.91 86.38 0.42 2.43 16 4 N -0.74 -18.04 5.70 -338.80 -1.93 -19.97 16 5 C 0.21 6.63 6.68 38.41 0.26 6.89 16 6 C -0.18 -4.67 9.31 22.38 0.21 -4.46 16 7 C -0.05 -1.37 9.39 22.31 0.21 -1.16 16 8 C -0.24 -9.06 5.46 -19.85 -0.11 -9.17 16 9 C 0.52 18.95 3.36 71.23 0.24 19.19 16 10 F -0.19 -7.28 17.30 44.97 0.78 -6.50 16 11 F -0.17 -5.29 16.45 44.97 0.74 -4.55 16 12 F -0.19 -7.82 16.45 44.97 0.74 -7.08 16 13 C -0.07 -3.08 8.04 22.40 0.18 -2.90 16 14 C 0.08 3.45 6.33 38.47 0.24 3.69 16 15 N -0.69 -30.67 4.99 -310.97 -1.55 -32.23 16 16 C 0.53 30.07 7.41 85.10 0.63 30.70 16 17 O -0.61 -40.31 12.30 -4.62 -0.06 -40.36 16 18 C -0.56 -30.64 9.31 23.59 0.22 -30.42 16 19 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 20 C 0.03 1.76 5.49 85.33 0.47 2.23 16 21 N -0.80 -47.96 11.75 21.85 0.26 -47.71 16 22 Si 1.00 39.27 29.56 68.60 2.03 41.29 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 25 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.03 7.94 -2.39 -0.02 1.01 16 32 H 0.07 1.05 7.96 -2.38 -0.02 1.03 16 33 H 0.40 9.87 7.09 -92.71 -0.66 9.21 16 34 H 0.17 2.99 6.73 -2.91 -0.02 2.97 16 35 H 0.16 3.46 7.59 -2.91 -0.02 3.44 16 36 H 0.11 5.92 5.73 -2.91 -0.02 5.90 16 37 H 0.40 14.81 7.67 -92.71 -0.71 14.10 16 38 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 Total: -1.00 -74.37 335.03 4.64 -69.73 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.23 Total: 32.75 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 3.87 Total: 14.63 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.23 Total: -99.91 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.06 Total: -40.36 kcal Atomic # 9 Polarization: -20.39 SS G_CDS: 2.26 Total: -18.13 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Total: -74.37 4.64 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188117268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.438 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds