Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.50702 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.29927 * 125.37949 * 90.31925 * 4 3 2 6 6 C 1.36072 * 108.47802 * 180.18653 * 5 4 3 7 7 C 1.47393 * 126.44680 * 179.82420 * 6 5 4 8 8 O 1.21631 * 119.99717 * 179.71400 * 7 6 5 9 9 N 1.34776 * 120.00729 * 359.71129 * 7 6 5 10 10 C 1.39846 * 120.00345 * 175.50162 * 9 7 6 11 11 C 1.38976 * 120.03751 * 215.15316 * 10 9 7 12 12 C 1.38157 * 120.06538 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.14075 * 359.74640 * 12 11 10 14 14 C 1.38910 * 120.07055 * 0.51236 * 13 12 11 15 15 O 1.35748 * 120.03250 * 179.76945 * 14 13 12 16 16 C 1.34836 * 116.99960 * 354.34480 * 15 14 13 17 17 H 1.08004 * 119.99931 * 5.02574 * 16 15 14 18 18 C 1.38650 * 119.99880 * 185.02859 * 16 15 14 19 19 N 1.31563 * 119.99882 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00207 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47091 * 90.00509 * 20 18 16 22 22 H 1.48501 * 109.46987 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.47428 * 330.00073 * 20 18 16 24 24 C 1.38737 * 120.03675 * 35.13463 * 10 9 7 25 25 C 1.36111 * 107.09710 * 359.55696 * 6 5 4 26 26 O 1.34047 * 125.37074 * 270.01672 * 4 3 2 27 27 H 1.08999 * 109.46950 * 59.99974 * 1 2 3 28 28 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46896 * 300.00478 * 1 2 3 30 30 H 1.08997 * 109.47117 * 239.99248 * 2 1 3 31 31 H 1.09003 * 109.46949 * 119.99266 * 2 1 3 32 32 H 1.08993 * 109.47195 * 59.99730 * 3 2 1 33 33 H 1.09003 * 109.46499 * 299.99542 * 3 2 1 34 34 H 0.97002 * 119.99491 * 355.49978 * 9 7 6 35 35 H 1.07997 * 119.96970 * 359.96216 * 11 10 9 36 36 H 1.07997 * 119.93100 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.96268 * 180.27529 * 13 12 11 38 38 H 0.96994 * 120.00125 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.06623 * 359.97438 * 24 10 9 40 40 H 1.08004 * 126.52283 * 180.29712 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2989 1.4484 -1.0603 6 6 5.6010 1.4419 -0.6653 7 6 6.7831 1.4418 -1.5456 8 8 7.9000 1.4408 -1.0640 9 7 6.6266 1.4427 -2.8843 10 6 7.7446 1.5375 -3.7190 11 6 7.6611 2.2376 -4.9167 12 6 8.7654 2.3321 -5.7415 13 6 9.9572 1.7358 -5.3764 14 6 10.0456 1.0302 -4.1831 15 8 11.2155 0.4407 -3.8274 16 6 12.2181 0.4774 -4.7282 17 1 12.0975 1.0299 -5.6483 18 6 13.4040 -0.1943 -4.4733 19 7 14.3825 -0.1581 -5.3520 20 14 13.6130 -1.1494 -2.8817 21 1 13.1531 -2.5475 -3.0793 22 1 15.0452 -1.1502 -2.4893 23 1 12.8069 -0.5098 -1.8110 24 6 8.9383 0.9332 -3.3523 25 6 5.6062 1.4416 0.6958 26 8 4.3235 1.4419 1.0921 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 5.7383 1.3775 -3.2687 35 1 6.7321 2.7080 -5.2030 36 1 8.6983 2.8770 -6.6715 37 1 10.8199 1.8153 -6.0212 38 1 15.2119 -0.6282 -5.1739 39 1 9.0059 0.3893 -2.4217 40 1 6.4766 1.4417 1.3353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273589581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = -16.709440 kcal Electronic energy + Delta-G solvation = -24721.045507 eV Core-core repulsion = 20889.453684 eV Total energy + Delta-G solvation = -3831.591823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74944 -40.15983 -38.72171 -36.68140 -35.93116 -35.02103 -34.09831 -32.34251 -31.10786 -29.67609 -28.70203 -27.53538 -25.27712 -24.58089 -22.79116 -22.32498 -21.56224 -20.99836 -20.35560 -18.45658 -18.00829 -17.42306 -17.09067 -16.66584 -15.71184 -15.59165 -15.23111 -15.20265 -15.01917 -14.55405 -14.14089 -13.82574 -13.78079 -13.73860 -13.62926 -12.84456 -12.71388 -12.40068 -12.32394 -12.26471 -11.92476 -11.69695 -11.45681 -11.27264 -11.25130 -11.13470 -10.98435 -10.82081 -10.27754 -9.99540 -9.77678 -9.31721 -9.28299 -8.83422 -7.81342 -7.29956 -6.38115 -4.04516 0.82521 1.62182 2.10937 2.23658 2.25555 3.01404 3.22871 3.28222 3.30340 3.47895 3.51620 4.28997 4.36074 4.40529 4.41400 4.53314 4.60958 4.76369 4.95358 4.99054 5.09247 5.14484 5.22678 5.23860 5.34617 5.51970 5.58546 5.60711 5.73898 5.75181 5.77223 6.07697 6.12822 6.27798 6.48800 6.77543 6.93481 7.12005 7.16771 7.33728 7.58236 7.61260 7.83577 8.05463 8.18722 8.97428 9.60632 10.69276 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.002593 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.221140 B =10795.561130 C =11598.244392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.024 4.024 4 C 0.198 3.802 5 N -0.459 5.459 6 C -0.068 4.068 7 C 0.596 3.404 8 O -0.508 6.508 9 N -0.650 5.650 10 C 0.171 3.829 11 C -0.223 4.223 12 C -0.060 4.060 13 C -0.230 4.230 14 C 0.173 3.827 15 O -0.213 6.213 16 C -0.388 4.388 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.879 5.879 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.257 1.257 24 C -0.187 4.187 25 C 0.016 3.984 26 O -0.196 6.196 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.279 0.721 39 H 0.134 0.866 40 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 2.809 10.626 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.062 4.062 4 C -0.012 4.012 5 N -0.189 5.189 6 C -0.188 4.188 7 C 0.382 3.618 8 O -0.382 6.382 9 N -0.294 5.294 10 C 0.078 3.922 11 C -0.244 4.244 12 C -0.079 4.079 13 C -0.250 4.250 14 C 0.120 3.880 15 O -0.118 6.118 16 C -0.464 4.464 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.729 3.271 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.181 1.181 24 C -0.208 4.208 25 C -0.058 4.058 26 O -0.081 6.081 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.152 0.848 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -25.938 2.641 10.554 28.127 hybrid contribution 0.224 -0.355 0.923 1.014 sum -25.714 2.286 11.477 28.251 Atomic orbital electron populations 1.21753 0.94470 1.02423 1.02242 1.21560 0.96644 0.94560 1.03408 1.20245 0.80629 0.99744 1.05539 1.26316 0.96368 1.00147 0.78329 1.70745 1.00641 1.17541 1.29991 1.21743 0.91903 1.12075 0.93085 1.16798 0.86360 0.76860 0.81789 1.90910 1.23801 1.48474 1.75044 1.43093 1.09773 1.71506 1.04994 1.17160 0.86535 0.97559 0.90932 1.20364 0.99777 1.07341 0.96913 1.20568 0.91971 0.97345 0.97976 1.21316 0.99372 1.04946 0.99352 1.18852 0.85911 0.91355 0.91924 1.83587 1.18073 1.67752 1.42393 1.20787 0.91595 1.33396 1.00592 0.87505 1.24456 0.94126 0.96660 0.98713 1.69647 1.05130 1.42083 1.34865 0.86206 0.77397 0.80325 0.83216 1.19894 1.20782 1.18143 1.20172 0.90982 1.07019 1.02616 1.25350 0.84806 0.99959 0.95683 1.84397 1.16684 1.69192 1.37876 0.92181 0.92076 0.92373 0.90827 0.91348 0.88633 0.87319 0.74861 0.87028 0.86619 0.84750 0.91080 0.84812 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.91 37.16 0.37 -0.17 16 2 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 3 C -0.02 -0.12 5.84 -27.88 -0.16 -0.29 16 4 C 0.20 1.83 7.56 -13.08 -0.10 1.73 16 5 N -0.46 -5.35 11.06 -7.66 -0.08 -5.43 16 6 C -0.07 -0.89 6.99 -83.02 -0.58 -1.47 16 7 C 0.60 9.68 7.66 -12.53 -0.10 9.58 16 8 O -0.51 -9.94 14.33 5.25 0.08 -9.86 16 9 N -0.65 -10.15 5.33 -10.86 -0.06 -10.21 16 10 C 0.17 3.20 6.29 -83.74 -0.53 2.68 16 11 C -0.22 -3.83 9.96 -39.34 -0.39 -4.22 16 12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 13 C -0.23 -5.08 9.17 -39.36 -0.36 -5.44 16 14 C 0.17 4.21 6.64 -39.14 -0.26 3.95 16 15 O -0.21 -5.90 8.58 0.04 0.00 -5.90 16 16 C -0.39 -11.20 9.95 30.88 0.31 -10.89 16 17 H 0.11 3.11 5.43 -52.48 -0.29 2.83 16 18 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 19 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 20 Si 0.90 22.41 28.62 -169.99 -4.86 17.55 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.19 -4.15 8.64 -39.20 -0.34 -4.49 16 25 C 0.02 0.17 11.95 29.97 0.36 0.52 16 26 O -0.20 -1.89 10.73 6.52 0.07 -1.82 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.41 5.34 8.56 -40.82 -0.35 4.99 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 3.07 5.63 -52.49 -0.30 2.77 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 3.10 6.22 -52.49 -0.33 2.77 16 40 H 0.23 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -33.54 351.25 -5.85 -39.39 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.62 Total: 5.02 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.44 Total: -9.03 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.63 Total: -40.64 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.15 Total: -17.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.86 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.54 -5.85 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273589581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.676 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds