Wall clock time and date at job start Tue Mar 31 2020 11:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.50702 * 109.47046 * 180.02562 * 3 2 1 5 5 N 1.29927 * 125.37949 * 90.31925 * 4 3 2 6 6 C 1.36072 * 108.47802 * 180.18653 * 5 4 3 7 7 C 1.47393 * 126.44680 * 179.82420 * 6 5 4 8 8 O 1.21631 * 119.99717 * 179.71400 * 7 6 5 9 9 N 1.34776 * 120.00729 * 359.71129 * 7 6 5 10 10 C 1.39846 * 120.00345 * 175.50162 * 9 7 6 11 11 C 1.38976 * 120.03751 * 215.15316 * 10 9 7 12 12 C 1.38157 * 120.06538 * 179.97438 * 11 10 9 13 13 C 1.38177 * 120.14075 * 359.74640 * 12 11 10 14 14 C 1.38910 * 120.07055 * 0.51236 * 13 12 11 15 15 O 1.35748 * 120.03250 * 179.76945 * 14 13 12 16 16 C 1.34836 * 116.99960 * 354.34480 * 15 14 13 17 17 H 1.08004 * 119.99931 * 5.02574 * 16 15 14 18 18 C 1.38650 * 119.99880 * 185.02859 * 16 15 14 19 19 N 1.31563 * 119.99882 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00207 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47091 * 90.00509 * 20 18 16 22 22 H 1.48501 * 109.46987 * 210.00125 * 20 18 16 23 23 H 1.48499 * 109.47428 * 330.00073 * 20 18 16 24 24 C 1.38737 * 120.03675 * 35.13463 * 10 9 7 25 25 C 1.36111 * 107.09710 * 359.55696 * 6 5 4 26 26 O 1.34047 * 125.37074 * 270.01672 * 4 3 2 27 27 H 1.08999 * 109.46950 * 59.99974 * 1 2 3 28 28 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46896 * 300.00478 * 1 2 3 30 30 H 1.08997 * 109.47117 * 239.99248 * 2 1 3 31 31 H 1.09003 * 109.46949 * 119.99266 * 2 1 3 32 32 H 1.08993 * 109.47195 * 59.99730 * 3 2 1 33 33 H 1.09003 * 109.46499 * 299.99542 * 3 2 1 34 34 H 0.97002 * 119.99491 * 355.49978 * 9 7 6 35 35 H 1.07997 * 119.96970 * 359.96216 * 11 10 9 36 36 H 1.07997 * 119.93100 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.96268 * 180.27529 * 13 12 11 38 38 H 0.96994 * 120.00125 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.06623 * 359.97438 * 24 10 9 40 40 H 1.08004 * 126.52283 * 180.29712 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.2989 1.4484 -1.0603 6 6 5.6010 1.4419 -0.6653 7 6 6.7831 1.4418 -1.5456 8 8 7.9000 1.4408 -1.0640 9 7 6.6266 1.4427 -2.8843 10 6 7.7446 1.5375 -3.7190 11 6 7.6611 2.2376 -4.9167 12 6 8.7654 2.3321 -5.7415 13 6 9.9572 1.7358 -5.3764 14 6 10.0456 1.0302 -4.1831 15 8 11.2155 0.4407 -3.8274 16 6 12.2181 0.4774 -4.7282 17 1 12.0975 1.0299 -5.6483 18 6 13.4040 -0.1943 -4.4733 19 7 14.3825 -0.1581 -5.3520 20 14 13.6130 -1.1494 -2.8817 21 1 13.1531 -2.5475 -3.0793 22 1 15.0452 -1.1502 -2.4893 23 1 12.8069 -0.5098 -1.8110 24 6 8.9383 0.9332 -3.3523 25 6 5.6062 1.4416 0.6958 26 8 4.3235 1.4419 1.0921 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 5.7383 1.3775 -3.2687 35 1 6.7321 2.7080 -5.2030 36 1 8.6983 2.8770 -6.6715 37 1 10.8199 1.8153 -6.0212 38 1 15.2119 -0.6282 -5.1739 39 1 9.0059 0.3893 -2.4217 40 1 6.4766 1.4417 1.3353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273589581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:06 Heat of formation + Delta-G solvation = -41.099616 kcal Electronic energy + Delta-G solvation = -24722.103144 eV Core-core repulsion = 20889.453684 eV Total energy + Delta-G solvation = -3832.649460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.57011 -41.61903 -40.43798 -38.36042 -36.46954 -35.88818 -35.47260 -34.44989 -31.90506 -31.29361 -30.23953 -28.11228 -27.27320 -25.80380 -23.83543 -23.27999 -22.85156 -22.06357 -21.51166 -19.89816 -19.70362 -19.03000 -17.91417 -17.62224 -17.27231 -16.92909 -16.55069 -16.28471 -16.00739 -15.82399 -15.70689 -15.48537 -15.23997 -14.79051 -14.34911 -14.30166 -14.23797 -14.18147 -13.34487 -13.05826 -13.00906 -12.78408 -12.74478 -12.53987 -12.47836 -12.10680 -12.10017 -11.99365 -11.65065 -11.59230 -11.44761 -11.06231 -10.88350 -10.15906 -9.46029 -8.99206 -8.51880 -6.23994 -0.14129 0.39562 0.60354 0.90081 1.27643 1.31397 1.46283 1.49602 1.83457 2.05339 2.26411 2.67172 2.74395 2.99558 3.14788 3.58810 3.67348 4.03744 4.07510 4.08626 4.24996 4.31201 4.34675 4.45649 4.53040 4.57560 4.66027 4.72189 4.76008 4.84711 4.93166 4.98340 5.26166 5.27024 5.31042 5.32527 5.35892 5.46741 5.64039 5.74863 5.87102 6.12088 6.19804 6.46055 6.82654 6.91352 7.57741 8.59354 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.002593 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.221140 B =10795.561130 C =11598.244392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.022 4.022 4 C 0.208 3.792 5 N -0.478 5.478 6 C -0.097 4.097 7 C 0.596 3.404 8 O -0.548 6.548 9 N -0.640 5.640 10 C 0.177 3.823 11 C -0.193 4.193 12 C -0.050 4.050 13 C -0.244 4.244 14 C 0.136 3.864 15 O -0.247 6.247 16 C -0.398 4.398 17 H 0.089 0.911 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.262 1.262 23 H -0.272 1.272 24 C -0.201 4.201 25 C 0.034 3.966 26 O -0.191 6.191 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.431 0.569 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.118 0.882 38 H 0.285 0.715 39 H 0.116 0.884 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.679 3.730 11.467 32.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.060 4.060 4 C -0.002 4.002 5 N -0.207 5.207 6 C -0.216 4.216 7 C 0.385 3.615 8 O -0.426 6.426 9 N -0.285 5.285 10 C 0.083 3.917 11 C -0.213 4.213 12 C -0.068 4.068 13 C -0.264 4.264 14 C 0.086 3.914 15 O -0.154 6.154 16 C -0.474 4.474 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.187 1.187 23 H -0.197 1.197 24 C -0.223 4.223 25 C -0.041 4.041 26 O -0.077 6.077 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.270 0.730 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.135 0.865 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -29.893 3.572 11.371 32.182 hybrid contribution 1.026 -0.500 0.663 1.319 sum -28.868 3.072 12.034 31.426 Atomic orbital electron populations 1.21734 0.93195 1.02631 1.03032 1.21523 0.97650 0.94148 1.02562 1.20536 0.77833 1.00262 1.07375 1.27161 0.97589 0.97853 0.77569 1.70706 1.00049 1.18948 1.31022 1.21360 0.91598 1.15190 0.93427 1.17207 0.86823 0.75511 0.81999 1.90896 1.25731 1.50256 1.75695 1.43027 1.09549 1.71177 1.04773 1.17306 0.86218 0.96388 0.91769 1.20917 1.01104 1.04383 0.94919 1.21022 0.90361 0.95971 0.99441 1.21388 1.00727 1.05734 0.98532 1.19327 0.85736 0.92637 0.93698 1.83535 1.19060 1.70135 1.42671 1.20772 0.92588 1.33567 1.00522 0.89356 1.25187 0.93865 0.97711 1.01749 1.69711 1.05821 1.43756 1.36556 0.85324 0.77955 0.79065 0.79028 1.18991 1.18671 1.19737 1.20202 0.92019 1.08090 1.01939 1.25743 0.85701 0.97499 0.95129 1.84451 1.16292 1.68976 1.37979 0.91678 0.92219 0.91300 0.92249 0.91703 0.86186 0.86061 0.72960 0.82078 0.82371 0.86466 0.90509 0.86579 0.73116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 71.98 0.71 0.06 16 2 C -0.12 -0.90 5.92 30.59 0.18 -0.72 16 3 C -0.02 -0.16 5.84 29.85 0.17 0.01 16 4 C 0.21 3.30 7.56 88.39 0.67 3.97 16 5 N -0.48 -10.10 11.06 -293.05 -3.24 -13.35 16 6 C -0.10 -2.40 6.99 40.40 0.28 -2.12 16 7 C 0.60 18.96 7.66 86.65 0.66 19.62 16 8 O -0.55 -21.79 14.33 -4.13 -0.06 -21.85 16 9 N -0.64 -18.87 5.33 -306.51 -1.63 -20.50 16 10 C 0.18 6.35 6.29 38.16 0.24 6.59 16 11 C -0.19 -5.87 9.96 22.43 0.22 -5.64 16 12 C -0.05 -1.67 10.03 22.24 0.22 -1.45 16 13 C -0.24 -10.94 9.17 22.42 0.21 -10.74 16 14 C 0.14 6.90 6.64 22.56 0.15 7.05 16 15 O -0.25 -14.42 8.58 -22.78 -0.20 -14.61 16 16 C -0.40 -24.31 9.95 67.92 0.68 -23.63 16 17 H 0.09 5.52 5.43 -2.91 -0.02 5.50 16 18 C 0.01 0.82 5.49 84.83 0.47 1.29 16 19 N -0.92 -55.78 13.96 21.61 0.30 -55.47 16 20 Si 0.96 47.90 28.62 68.60 1.96 49.87 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.27 -14.05 7.11 99.48 0.71 -13.34 16 24 C -0.20 -9.14 8.64 22.52 0.19 -8.95 16 25 C 0.03 0.65 11.95 67.32 0.80 1.46 16 26 O -0.19 -3.21 10.73 0.41 0.00 -3.20 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.43 9.89 8.56 -92.71 -0.79 9.10 16 35 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 38 H 0.29 15.89 8.31 -92.71 -0.77 15.12 16 39 H 0.12 5.65 6.22 -2.91 -0.02 5.63 16 40 H 0.25 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -77.51 351.25 3.30 -74.21 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.30 Total: 18.10 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.87 Total: -13.20 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -4.57 Total: -89.32 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.25 Total: -39.66 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.96 Total: 49.87 kcal Total: -77.51 3.30 -74.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273589581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.110 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds