Wall clock time and date at job start Tue Mar 31 2020 11:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00180 * 2 1 4 4 N 1.46500 * 109.47486 * 125.00310 * 3 2 1 5 5 C 1.46508 * 119.99778 * 270.00296 * 4 3 2 6 6 C 1.50700 * 109.46793 * 269.99833 * 5 4 3 7 7 H 1.07997 * 120.00173 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99600 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99915 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00261 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47450 * 89.99876 * 10 8 6 12 12 H 1.48501 * 109.47281 * 210.00289 * 10 8 6 13 13 H 1.48502 * 109.46722 * 329.99805 * 10 8 6 14 14 C 1.34770 * 120.00326 * 89.99919 * 4 3 2 15 15 O 1.21590 * 119.99856 * 180.02562 * 14 4 3 16 16 N 1.34774 * 120.00177 * 0.02562 * 14 4 3 17 17 C 1.39973 * 120.00110 * 185.63117 * 16 14 4 18 18 C 1.39135 * 120.10263 * 24.76935 * 17 16 14 19 19 C 1.38224 * 120.14176 * 179.97438 * 18 17 16 20 20 C 1.38025 * 120.40571 * 0.02873 * 19 18 17 21 21 C 1.39613 * 119.94524 * 359.97438 * 20 19 18 22 22 C 1.38145 * 120.09806 * 204.77482 * 17 16 14 23 23 C 1.50786 * 133.38918 * 359.97438 * 22 17 16 24 24 O 1.45400 * 106.45544 * 179.97438 * 23 22 17 25 25 C 1.34459 * 108.93124 * 0.04449 * 24 23 22 26 26 O 1.21473 * 124.87353 * 179.97438 * 25 24 23 27 27 H 1.08004 * 120.00369 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00122 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00076 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47301 * 5.00150 * 3 2 1 31 31 H 1.09002 * 109.47505 * 245.00132 * 3 2 1 32 32 H 1.08998 * 109.46688 * 29.99453 * 5 4 3 33 33 H 1.08999 * 109.47308 * 149.99654 * 5 4 3 34 34 H 0.96997 * 119.99913 * 180.02562 * 9 8 6 35 35 H 0.97000 * 119.99490 * 5.62771 * 16 14 4 36 36 H 1.08009 * 119.92553 * 0.02562 * 18 17 16 37 37 H 1.07998 * 119.79541 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.02479 * 179.97438 * 20 19 18 39 39 H 1.09004 * 110.06487 * 299.23335 * 23 22 17 40 40 H 1.08996 * 110.07113 * 60.70328 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3436 2.4803 7 1 3.3040 3.8368 1.6367 8 6 2.5184 4.0667 3.6082 9 7 2.7670 5.3572 3.6565 10 14 1.7226 3.2136 5.0671 11 1 2.7777 2.7225 5.9894 12 1 0.8460 4.1740 5.7843 13 1 0.9112 2.0661 4.5872 14 6 4.2497 0.8661 0.9823 15 8 5.0216 0.8880 1.9215 16 7 4.6499 0.3762 -0.2077 17 6 5.9126 -0.2149 -0.3323 18 6 6.5383 -0.7657 0.7818 19 6 7.7849 -1.3500 0.6596 20 6 8.4197 -1.3921 -0.5654 21 6 7.8013 -0.8425 -1.6900 22 6 6.5414 -0.2530 -1.5617 23 6 6.1593 0.2352 -2.9362 24 8 7.2627 -0.1107 -3.8177 25 6 8.2145 -0.7341 -3.1012 26 8 9.2635 -1.1487 -3.5521 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6966 2.5459 33 1 3.0990 1.3603 3.2260 34 1 2.5381 5.8658 4.4501 35 1 4.0629 0.4331 -0.9778 36 1 6.0483 -0.7373 1.7439 37 1 8.2656 -1.7755 1.5280 38 1 9.3939 -1.8499 -0.6537 39 1 5.2463 -0.2591 -3.2682 40 1 6.0157 1.3156 -2.9228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297122319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:26 Heat of formation + Delta-G solvation = -29.934654 kcal Electronic energy + Delta-G solvation = -25919.399447 eV Core-core repulsion = 22087.234136 eV Total energy + Delta-G solvation = -3832.165311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79983 -40.35097 -38.35106 -37.46694 -36.11394 -34.82327 -33.31266 -32.31174 -32.01073 -30.08372 -28.22006 -27.29569 -25.83071 -24.51503 -22.78375 -22.47038 -20.82395 -20.24009 -19.59374 -18.26064 -17.84241 -17.06150 -17.01672 -16.93417 -16.24105 -15.89737 -15.37372 -15.09415 -14.70475 -14.58958 -14.18956 -14.07520 -13.85565 -13.53436 -13.46256 -13.23288 -12.94456 -12.45679 -12.33406 -11.96539 -11.81135 -11.67426 -11.44679 -11.16111 -11.08202 -10.68188 -10.61135 -10.51991 -10.24316 -9.71526 -9.59039 -9.45711 -9.13043 -8.68076 -8.31601 -7.89076 -6.17746 -4.17776 0.43442 1.03570 2.14436 2.33344 2.79811 2.84246 3.22307 3.28062 3.30453 3.32510 3.50288 3.70385 3.91786 4.06936 4.30860 4.63564 4.83630 4.86877 4.93929 5.04692 5.11503 5.14091 5.20386 5.22054 5.31119 5.43423 5.74612 5.81950 5.89764 5.96185 6.20037 6.30516 6.36001 6.41313 6.54039 6.65471 6.72311 6.80149 7.03453 7.22166 7.25181 7.49167 8.15345 8.35589 8.81070 8.86760 9.41399 10.95435 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.003547 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.399555 B = 7892.678796 C = 8555.341276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.136 3.864 4 N -0.593 5.593 5 C 0.232 3.768 6 C -0.534 4.534 7 H 0.075 0.925 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.702 3.298 15 O -0.561 6.561 16 N -0.691 5.691 17 C 0.212 3.788 18 C -0.091 4.091 19 C -0.102 4.102 20 C -0.062 4.062 21 C -0.174 4.174 22 C -0.154 4.154 23 C 0.099 3.901 24 O -0.319 6.319 25 C 0.526 3.474 26 O -0.457 6.457 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.404 0.596 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -13.993 -10.638 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.111 3.889 6 C -0.572 4.572 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.404 3.596 15 O -0.438 6.438 16 N -0.339 5.339 17 C 0.114 3.886 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.081 4.081 21 C -0.177 4.177 22 C -0.159 4.159 23 C 0.024 3.976 24 O -0.234 6.234 25 C 0.368 3.632 26 O -0.342 6.342 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.241 0.759 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.436 -13.861 -10.198 17.268 hybrid contribution -0.843 -0.123 0.535 1.006 sum 0.594 -13.984 -9.663 17.008 Atomic orbital electron populations 1.23883 0.95808 1.02053 0.99487 1.23422 0.96548 0.98801 1.00846 1.20592 0.93247 0.96024 0.88965 1.47272 1.08724 1.62817 1.13828 1.19656 0.94930 0.95103 0.79169 1.21309 1.41582 0.91074 1.03268 0.90723 1.24836 0.95187 0.94708 0.98105 1.69888 1.47438 1.06614 1.29320 0.86874 0.79900 0.79682 0.83368 1.19828 1.21004 1.19015 1.15853 0.83120 0.78471 0.82185 1.90874 1.52313 1.61346 1.39222 1.43003 1.16156 1.61952 1.12818 1.16626 0.85689 0.94578 0.91673 1.21910 0.95560 0.94069 0.99601 1.21136 0.94819 0.98936 0.97218 1.20787 0.99734 0.97212 0.90410 1.20470 0.96486 1.05690 0.95013 1.20283 0.96409 1.04212 0.94954 1.22276 0.88402 1.02643 0.84256 1.87257 1.29318 1.70120 1.36732 1.20534 0.82505 0.74830 0.85314 1.90873 1.20904 1.45066 1.77401 0.88556 0.88045 0.87641 0.88506 0.91264 0.94808 0.94294 0.92443 0.75864 0.81824 0.84286 0.84803 0.86951 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 14.32 29.02 0.42 -1.37 16 2 C -0.18 -1.98 9.85 -36.03 -0.35 -2.33 16 3 C 0.14 1.80 5.66 -5.20 -0.03 1.77 16 4 N -0.59 -10.76 2.44 -182.18 -0.44 -11.20 16 5 C 0.23 5.20 4.23 -5.19 -0.02 5.18 16 6 C -0.53 -14.42 9.94 -34.44 -0.34 -14.77 16 7 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 10 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 14 C 0.70 12.67 8.08 -86.93 -0.70 11.97 16 15 O -0.56 -12.29 13.08 5.29 0.07 -12.22 16 16 N -0.69 -9.10 5.24 -14.33 -0.08 -9.17 16 17 C 0.21 2.75 6.42 -83.84 -0.54 2.21 16 18 C -0.09 -1.23 8.73 -39.25 -0.34 -1.57 16 19 C -0.10 -1.13 10.01 -39.66 -0.40 -1.53 16 20 C -0.06 -0.69 10.10 -39.15 -0.40 -1.09 16 21 C -0.17 -2.14 6.27 -105.09 -0.66 -2.80 16 22 C -0.15 -1.76 6.28 -104.07 -0.65 -2.41 16 23 C 0.10 0.86 7.85 36.05 0.28 1.15 16 24 O -0.32 -3.78 11.14 -39.49 -0.44 -4.22 16 25 C 0.53 7.10 8.59 34.48 0.30 7.40 16 26 O -0.46 -7.38 18.04 -18.92 -0.34 -7.72 16 27 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 28 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 29 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.10 1.37 7.72 -51.93 -0.40 0.97 16 31 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 32 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.40 3.97 6.40 -40.82 -0.26 3.71 16 36 H 0.16 2.52 5.79 -52.48 -0.30 2.22 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -34.17 346.81 -8.00 -42.17 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -4.56 Total: 3.34 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -3.54 Total: 3.79 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.25 Total: -46.22 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.71 Total: -24.17 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.17 -8.00 -42.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297122319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.235 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds