Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00180 * 2 1 4 4 N 1.46500 * 109.47486 * 125.00310 * 3 2 1 5 5 C 1.46508 * 119.99778 * 270.00296 * 4 3 2 6 6 C 1.50700 * 109.46793 * 269.99833 * 5 4 3 7 7 H 1.07997 * 120.00173 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99600 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99915 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00261 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47450 * 89.99876 * 10 8 6 12 12 H 1.48501 * 109.47281 * 210.00289 * 10 8 6 13 13 H 1.48502 * 109.46722 * 329.99805 * 10 8 6 14 14 C 1.34770 * 120.00326 * 89.99919 * 4 3 2 15 15 O 1.21590 * 119.99856 * 180.02562 * 14 4 3 16 16 N 1.34774 * 120.00177 * 0.02562 * 14 4 3 17 17 C 1.39973 * 120.00110 * 185.63117 * 16 14 4 18 18 C 1.39135 * 120.10263 * 24.76935 * 17 16 14 19 19 C 1.38224 * 120.14176 * 179.97438 * 18 17 16 20 20 C 1.38025 * 120.40571 * 0.02873 * 19 18 17 21 21 C 1.39613 * 119.94524 * 359.97438 * 20 19 18 22 22 C 1.38145 * 120.09806 * 204.77482 * 17 16 14 23 23 C 1.50786 * 133.38918 * 359.97438 * 22 17 16 24 24 O 1.45400 * 106.45544 * 179.97438 * 23 22 17 25 25 C 1.34459 * 108.93124 * 0.04449 * 24 23 22 26 26 O 1.21473 * 124.87353 * 179.97438 * 25 24 23 27 27 H 1.08004 * 120.00369 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00122 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00076 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47301 * 5.00150 * 3 2 1 31 31 H 1.09002 * 109.47505 * 245.00132 * 3 2 1 32 32 H 1.08998 * 109.46688 * 29.99453 * 5 4 3 33 33 H 1.08999 * 109.47308 * 149.99654 * 5 4 3 34 34 H 0.96997 * 119.99913 * 180.02562 * 9 8 6 35 35 H 0.97000 * 119.99490 * 5.62771 * 16 14 4 36 36 H 1.08009 * 119.92553 * 0.02562 * 18 17 16 37 37 H 1.07998 * 119.79541 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.02479 * 179.97438 * 20 19 18 39 39 H 1.09004 * 110.06487 * 299.23335 * 23 22 17 40 40 H 1.08996 * 110.07113 * 60.70328 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3436 2.4803 7 1 3.3040 3.8368 1.6367 8 6 2.5184 4.0667 3.6082 9 7 2.7670 5.3572 3.6565 10 14 1.7226 3.2136 5.0671 11 1 2.7777 2.7225 5.9894 12 1 0.8460 4.1740 5.7843 13 1 0.9112 2.0661 4.5872 14 6 4.2497 0.8661 0.9823 15 8 5.0216 0.8880 1.9215 16 7 4.6499 0.3762 -0.2077 17 6 5.9126 -0.2149 -0.3323 18 6 6.5383 -0.7657 0.7818 19 6 7.7849 -1.3500 0.6596 20 6 8.4197 -1.3921 -0.5654 21 6 7.8013 -0.8425 -1.6900 22 6 6.5414 -0.2530 -1.5617 23 6 6.1593 0.2352 -2.9362 24 8 7.2627 -0.1107 -3.8177 25 6 8.2145 -0.7341 -3.1012 26 8 9.2635 -1.1487 -3.5521 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4888 1.6966 2.5459 33 1 3.0990 1.3603 3.2260 34 1 2.5381 5.8658 4.4501 35 1 4.0629 0.4331 -0.9778 36 1 6.0483 -0.7373 1.7439 37 1 8.2656 -1.7755 1.5280 38 1 9.3939 -1.8499 -0.6537 39 1 5.2463 -0.2591 -3.2682 40 1 6.0157 1.3156 -2.9228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297122319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = -51.380709 kcal Electronic energy + Delta-G solvation = -25920.329417 eV Core-core repulsion = 22087.234136 eV Total energy + Delta-G solvation = -3833.095282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77144 -41.60243 -39.44525 -38.50022 -37.38377 -36.05530 -34.92514 -33.82233 -32.94252 -31.30900 -29.76225 -28.18515 -27.00939 -25.64534 -24.41192 -23.42356 -22.02110 -21.22788 -20.72330 -19.37752 -19.09128 -18.91108 -18.10773 -17.87641 -17.41264 -16.90234 -16.67785 -16.33677 -15.93888 -15.75788 -15.69967 -15.08086 -14.81976 -14.72533 -14.49766 -14.41903 -14.26736 -13.97442 -13.54537 -13.38300 -13.10453 -12.86887 -12.60017 -12.49835 -12.27757 -12.03990 -11.94809 -11.76040 -11.68977 -11.61744 -11.02951 -10.80682 -10.34783 -10.08783 -9.64199 -9.10121 -8.31545 -6.36607 -0.54153 0.09284 1.20149 1.31400 1.36528 1.39435 1.47393 1.66960 1.95493 2.08043 2.32953 2.56547 2.67024 2.86889 3.03769 3.05317 3.80682 3.96324 4.04867 4.16068 4.19168 4.23474 4.25759 4.34196 4.40372 4.55652 4.70788 4.83922 4.88406 4.91327 5.04901 5.06979 5.24441 5.32069 5.44794 5.47162 5.48366 5.72007 5.78360 5.87127 5.91053 6.23133 6.26536 6.65493 6.88473 7.24760 7.48282 8.85211 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.003547 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.399555 B = 7892.678796 C = 8555.341276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.130 3.870 4 N -0.601 5.601 5 C 0.244 3.756 6 C -0.535 4.535 7 H 0.030 0.970 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.944 3.056 11 H -0.276 1.276 12 H -0.279 1.279 13 H -0.235 1.235 14 C 0.699 3.301 15 O -0.608 6.608 16 N -0.670 5.670 17 C 0.192 3.808 18 C -0.106 4.106 19 C -0.098 4.098 20 C -0.056 4.056 21 C -0.190 4.190 22 C -0.138 4.138 23 C 0.094 3.906 24 O -0.323 6.323 25 C 0.528 3.472 26 O -0.492 6.492 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.267 0.733 35 H 0.421 0.579 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -15.978 -11.433 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.333 5.333 5 C 0.121 3.879 6 C -0.573 4.573 7 H 0.049 0.951 8 C -0.185 4.185 9 N -0.586 5.586 10 Si 0.767 3.233 11 H -0.202 1.202 12 H -0.204 1.204 13 H -0.158 1.158 14 C 0.401 3.599 15 O -0.488 6.488 16 N -0.320 5.320 17 C 0.096 3.904 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.075 4.075 21 C -0.192 4.192 22 C -0.142 4.142 23 C 0.021 3.979 24 O -0.238 6.238 25 C 0.372 3.628 26 O -0.381 6.381 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.022 -15.874 -11.079 19.358 hybrid contribution -0.377 0.528 0.679 0.939 sum -0.355 -15.346 -10.400 18.542 Atomic orbital electron populations 1.24094 0.95539 1.03039 0.97439 1.23261 0.96761 0.97839 1.02606 1.20851 0.92856 0.97065 0.88425 1.47178 1.09725 1.62627 1.13795 1.19253 0.95531 0.91845 0.81256 1.21570 1.40425 0.93540 1.01804 0.95121 1.25798 0.95974 0.95277 1.01461 1.70048 1.49472 1.08568 1.30485 0.85776 0.79080 0.79418 0.79046 1.20201 1.20449 1.15820 1.16006 0.82668 0.78327 0.82934 1.90847 1.53558 1.63157 1.41199 1.42585 1.16549 1.61141 1.11712 1.16659 0.85829 0.95709 0.92234 1.21882 0.96634 0.95151 0.99022 1.21342 0.93875 0.98250 0.98145 1.21061 1.00278 0.96195 0.89968 1.20563 0.97136 1.06736 0.94813 1.20361 0.95649 1.02749 0.95421 1.22713 0.88631 1.04214 0.82308 1.87244 1.29657 1.69540 1.37389 1.20642 0.82228 0.74249 0.85648 1.90850 1.22406 1.46829 1.78002 0.86565 0.88092 0.86676 0.89697 0.88256 0.93015 0.95820 0.92363 0.73821 0.84037 0.81851 0.82988 0.82905 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 14.32 67.79 0.97 -1.86 16 2 C -0.19 -3.64 9.85 25.65 0.25 -3.39 16 3 C 0.13 3.22 5.66 85.63 0.48 3.71 16 4 N -0.60 -21.45 2.44 -848.57 -2.07 -23.52 16 5 C 0.24 10.87 4.23 85.63 0.36 11.23 16 6 C -0.53 -29.63 9.94 25.60 0.25 -29.37 16 7 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 8 C 0.01 0.74 5.47 84.66 0.46 1.20 16 9 N -0.95 -57.99 13.96 21.45 0.30 -57.69 16 10 Si 0.94 42.31 27.47 68.60 1.88 44.20 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 14 C 0.70 25.11 8.08 179.06 1.45 26.55 16 15 O -0.61 -27.29 13.08 -4.00 -0.05 -27.34 16 16 N -0.67 -16.69 5.24 -317.50 -1.67 -18.35 16 17 C 0.19 4.75 6.42 38.03 0.24 4.99 16 18 C -0.11 -2.83 8.73 22.48 0.20 -2.63 16 19 C -0.10 -2.04 10.01 22.22 0.22 -1.82 16 20 C -0.06 -1.16 10.10 22.55 0.23 -0.93 16 21 C -0.19 -4.36 6.27 -20.17 -0.13 -4.49 16 22 C -0.14 -2.84 6.28 -19.51 -0.12 -2.97 16 23 C 0.09 1.36 7.85 71.26 0.56 1.91 16 24 O -0.32 -6.98 11.14 -54.02 -0.60 -7.58 16 25 C 0.53 13.60 8.59 70.25 0.60 14.20 16 26 O -0.49 -15.67 18.04 19.61 0.35 -15.31 16 27 H 0.12 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.10 1.76 7.84 -2.91 -0.02 1.74 16 29 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.08 2.31 7.72 -2.39 -0.02 2.29 16 31 H 0.10 1.78 6.29 -2.39 -0.01 1.77 16 32 H 0.05 2.13 7.13 -2.39 -0.02 2.11 16 33 H 0.02 1.14 6.85 -2.39 -0.02 1.12 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.42 7.14 6.40 -92.71 -0.59 6.55 16 36 H 0.14 4.49 5.79 -2.91 -0.02 4.47 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.17 346.81 4.62 -73.55 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.44 Total: 15.70 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.04 Total: 16.34 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.44 Total: -99.56 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.30 Total: -50.23 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.20 kcal Total: -78.17 4.62 -73.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297122319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.166 kcal (2) G-P(sol) polarization free energy of solvation -78.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds