Wall clock time and date at job start Tue Mar 31 2020 11:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 N 1.46494 * 109.47706 * 179.97438 * 3 2 1 5 5 C 1.36877 * 119.99893 * 82.76401 * 4 3 2 6 6 H 1.07993 * 120.00383 * 171.50343 * 5 4 3 7 7 C 1.39052 * 119.99786 * 351.50070 * 5 4 3 8 8 N 1.31361 * 120.00062 * 1.68760 * 7 5 4 9 9 Si 1.86800 * 119.99923 * 181.68658 * 7 5 4 10 10 H 1.48507 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47278 * 120.00066 * 9 7 5 12 12 H 1.48502 * 109.47403 * 240.00302 * 9 7 5 13 13 C 1.34773 * 120.00294 * 262.76887 * 4 3 2 14 14 O 1.21589 * 120.00033 * 184.75602 * 13 4 3 15 15 C 1.47717 * 119.99789 * 4.74932 * 13 4 3 16 16 C 1.40087 * 120.56941 * 299.97360 * 15 13 4 17 17 C 1.38340 * 118.28829 * 179.73142 * 16 15 13 18 18 C 1.38371 * 119.30368 * 0.52314 * 17 16 15 19 19 C 1.50706 * 119.45231 * 179.71708 * 18 17 16 20 20 F 1.39892 * 109.47203 * 185.02346 * 19 18 17 21 21 F 1.39905 * 109.46865 * 305.02600 * 19 18 17 22 22 F 1.39901 * 109.46969 * 65.02230 * 19 18 17 23 23 N 1.31933 * 121.09753 * 359.74420 * 18 17 16 24 24 C 1.31683 * 121.88367 * 359.97438 * 23 18 17 25 25 C 1.50704 * 119.72063 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46886 * 300.00370 * 1 2 3 28 28 H 1.08994 * 109.46538 * 60.00350 * 1 2 3 29 29 H 1.08998 * 109.47392 * 239.99629 * 2 1 3 30 30 H 1.09000 * 109.46893 * 119.99373 * 2 1 3 31 31 H 1.09003 * 109.47474 * 59.99143 * 3 2 1 32 32 H 1.09006 * 109.46869 * 299.99829 * 3 2 1 33 33 H 0.96998 * 119.99732 * 179.97438 * 8 7 5 34 34 H 1.08007 * 120.85880 * 359.97438 * 16 15 13 35 35 H 1.07995 * 120.34980 * 180.26910 * 17 16 15 36 36 H 1.08995 * 109.47473 * 274.43365 * 25 24 23 37 37 H 1.09010 * 109.46716 * 34.43392 * 25 24 23 38 38 H 1.08999 * 109.47009 * 154.42692 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1899 1.2930 -1.1750 6 1 5.2610 1.4295 -1.1972 7 6 3.5065 0.9654 -2.3409 8 7 2.1999 0.8320 -2.3209 9 14 4.4467 0.7152 -3.9356 10 1 5.8972 0.9208 -3.6926 11 1 4.2195 -0.6655 -4.4327 12 1 3.9709 1.6907 -4.9491 13 6 4.1785 1.5896 1.1587 14 8 5.3912 1.6765 1.1500 15 6 3.4432 1.6454 2.4387 16 6 2.4928 2.6480 2.6712 17 6 1.8278 2.6524 3.8843 18 6 2.1276 1.6824 4.8244 19 6 1.4099 1.6878 6.1496 20 9 1.9501 0.6973 6.9766 21 9 1.5635 2.9383 6.7579 22 9 0.0497 1.4331 5.9442 23 7 3.0318 0.7531 4.5803 24 6 3.6874 0.7033 3.4393 25 6 4.7108 -0.3795 3.2123 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 1.7232 0.6038 -3.1342 34 1 2.2817 3.3959 1.9211 35 1 1.0855 3.4073 4.0969 36 1 5.6704 -0.0640 3.6217 37 1 4.3874 -1.2948 3.7083 38 1 4.8145 -0.5629 2.1429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299124431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:03 Heat of formation + Delta-G solvation = -131.826796 kcal Electronic energy + Delta-G solvation = -27389.325662 eV Core-core repulsion = 23010.885236 eV Total energy + Delta-G solvation = -4378.440426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -50.12979 -47.67499 -47.56839 -40.55532 -38.41994 -35.64013 -33.16096 -32.93769 -32.04579 -31.48547 -28.18852 -27.01145 -25.86040 -24.50339 -22.86117 -22.28122 -20.74270 -19.84070 -18.52481 -18.49449 -18.22459 -17.27459 -16.72760 -16.18751 -15.24563 -14.69773 -14.45085 -14.40091 -14.39485 -14.05367 -14.02871 -13.88737 -13.80786 -13.73867 -13.72570 -13.53593 -13.06209 -12.67265 -12.35494 -12.28062 -11.93007 -11.82388 -11.79626 -11.36116 -11.16949 -10.84903 -10.53716 -10.46889 -10.30352 -10.04061 -9.72503 -9.63021 -8.97581 -8.96643 -8.60599 -7.91874 -6.42239 -4.03802 0.70752 1.22873 2.50441 2.98784 3.13737 3.19727 3.34698 3.53894 3.73646 3.93876 3.96305 4.41677 4.53934 4.61660 4.85901 4.91425 5.03371 5.12489 5.41278 5.56207 5.80920 5.90408 5.95909 5.98357 6.01293 6.16359 6.24377 6.30639 6.34617 6.62472 6.63568 6.80155 6.88214 7.20154 7.42094 7.60988 7.74812 7.86339 8.28612 8.92774 9.16353 9.69700 10.41507 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004091 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.712258 B = 6843.085762 C = 7402.785858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.112 3.888 4 N -0.420 5.420 5 C -0.291 4.291 6 H 0.109 0.891 7 C 0.025 3.975 8 N -0.865 5.865 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.466 3.534 14 O -0.582 6.582 15 C -0.096 4.096 16 C -0.055 4.055 17 C -0.131 4.131 18 C 0.028 3.972 19 C 0.524 3.476 20 F -0.164 7.164 21 F -0.175 7.175 22 F -0.174 7.174 23 N -0.447 5.447 24 C 0.163 3.837 25 C -0.098 4.098 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.123 0.877 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 1.216 8.671 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.010 4.010 4 N -0.135 5.135 5 C -0.419 4.419 6 H 0.127 0.873 7 C -0.178 4.178 8 N -0.505 5.505 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.253 3.747 14 O -0.468 6.468 15 C -0.102 4.102 16 C -0.082 4.082 17 C -0.151 4.151 18 C -0.111 4.111 19 C 0.469 3.531 20 F -0.146 7.146 21 F -0.156 7.156 22 F -0.155 7.155 23 N -0.156 5.156 24 C 0.023 3.977 25 C -0.156 4.156 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.140 0.860 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.866 0.587 9.131 10.363 hybrid contribution -0.291 0.528 -1.082 1.238 sum -5.157 1.115 8.049 9.625 Atomic orbital electron populations 1.21567 0.97268 0.99930 1.00518 1.21945 0.94114 0.97961 1.01446 1.22151 0.79628 0.97895 1.01357 1.43860 1.06124 1.58439 1.05123 1.19961 0.94346 1.43581 0.83979 0.87304 1.25381 0.95945 0.96448 1.00001 1.70127 1.06288 1.45806 1.28320 0.85701 0.79761 0.78048 0.80357 1.19124 1.20497 1.20562 1.17441 0.87148 0.87587 0.82484 1.90660 1.12898 1.57174 1.86047 1.21427 0.95927 0.95310 0.97521 1.21775 0.92984 0.97365 0.96046 1.21589 1.00949 0.98888 0.93709 1.20773 0.99265 0.96708 0.94377 1.17905 0.76852 0.73859 0.84479 1.93213 1.85648 1.61778 1.73920 1.93211 1.95460 1.42200 1.84741 1.93221 1.33307 1.93936 1.95061 1.66943 1.05374 1.21671 1.21609 1.21284 0.94509 0.95037 0.86867 1.20730 0.95953 0.94926 1.03957 0.94274 0.94744 0.92412 0.88080 0.96110 0.94881 0.85980 0.92034 0.83210 0.83766 0.89744 0.90678 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.12 -2.33 5.48 -26.73 -0.15 -2.48 16 3 C 0.11 2.32 4.56 -4.05 -0.02 2.31 16 4 N -0.42 -9.81 2.63 -115.93 -0.31 -10.12 16 5 C -0.29 -7.29 9.51 -15.00 -0.14 -7.43 16 6 H 0.11 2.89 7.18 -52.49 -0.38 2.52 16 7 C 0.02 0.57 5.25 -17.45 -0.09 0.48 16 8 N -0.86 -19.63 7.18 55.50 0.40 -19.23 16 9 Si 0.93 18.88 29.55 -169.99 -5.02 13.86 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 13 C 0.47 10.68 5.83 -12.39 -0.07 10.61 16 14 O -0.58 -15.11 15.99 5.29 0.08 -15.03 16 15 C -0.10 -1.85 4.95 -104.83 -0.52 -2.37 16 16 C -0.06 -0.89 7.71 -38.85 -0.30 -1.19 16 17 C -0.13 -1.85 9.59 -39.49 -0.38 -2.23 16 18 C 0.03 0.44 6.27 -82.50 -0.52 -0.08 16 19 C 0.52 7.32 3.31 36.01 0.12 7.44 16 20 F -0.16 -2.44 16.84 2.25 0.04 -2.40 16 21 F -0.17 -2.27 17.15 2.25 0.04 -2.24 16 22 F -0.17 -2.33 17.28 2.25 0.04 -2.29 16 23 N -0.45 -7.82 9.63 -5.39 -0.05 -7.87 16 24 C 0.16 3.00 6.82 -82.15 -0.56 2.44 16 25 C -0.10 -1.67 9.56 36.01 0.34 -1.32 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.29 5.86 -51.93 -0.30 1.98 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.61 4.25 -51.93 -0.22 0.39 16 32 H 0.12 2.71 5.89 -51.93 -0.31 2.41 16 33 H 0.27 5.82 8.31 -40.82 -0.34 5.48 16 34 H 0.15 2.18 7.43 -52.48 -0.39 1.79 16 35 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.09 1.63 6.73 -51.93 -0.35 1.28 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -26.43 328.89 -5.78 -32.21 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.04 Total: 3.90 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.91 Total: 4.26 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.04 Total: -37.23 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.12 Total: -6.92 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.43 -5.78 -32.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299124431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.619 kcal (2) G-P(sol) polarization free energy of solvation -26.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds