Wall clock time and date at job start Tue Mar 31 2020 11:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 N 1.46494 * 109.47706 * 179.97438 * 3 2 1 5 5 C 1.36877 * 119.99893 * 82.76401 * 4 3 2 6 6 H 1.07993 * 120.00383 * 171.50343 * 5 4 3 7 7 C 1.39052 * 119.99786 * 351.50070 * 5 4 3 8 8 N 1.31361 * 120.00062 * 1.68760 * 7 5 4 9 9 Si 1.86800 * 119.99923 * 181.68658 * 7 5 4 10 10 H 1.48507 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47278 * 120.00066 * 9 7 5 12 12 H 1.48502 * 109.47403 * 240.00302 * 9 7 5 13 13 C 1.34773 * 120.00294 * 262.76887 * 4 3 2 14 14 O 1.21589 * 120.00033 * 184.75602 * 13 4 3 15 15 C 1.47717 * 119.99789 * 4.74932 * 13 4 3 16 16 C 1.40087 * 120.56941 * 299.97360 * 15 13 4 17 17 C 1.38340 * 118.28829 * 179.73142 * 16 15 13 18 18 C 1.38371 * 119.30368 * 0.52314 * 17 16 15 19 19 C 1.50706 * 119.45231 * 179.71708 * 18 17 16 20 20 F 1.39892 * 109.47203 * 185.02346 * 19 18 17 21 21 F 1.39905 * 109.46865 * 305.02600 * 19 18 17 22 22 F 1.39901 * 109.46969 * 65.02230 * 19 18 17 23 23 N 1.31933 * 121.09753 * 359.74420 * 18 17 16 24 24 C 1.31683 * 121.88367 * 359.97438 * 23 18 17 25 25 C 1.50704 * 119.72063 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46886 * 300.00370 * 1 2 3 28 28 H 1.08994 * 109.46538 * 60.00350 * 1 2 3 29 29 H 1.08998 * 109.47392 * 239.99629 * 2 1 3 30 30 H 1.09000 * 109.46893 * 119.99373 * 2 1 3 31 31 H 1.09003 * 109.47474 * 59.99143 * 3 2 1 32 32 H 1.09006 * 109.46869 * 299.99829 * 3 2 1 33 33 H 0.96998 * 119.99732 * 179.97438 * 8 7 5 34 34 H 1.08007 * 120.85880 * 359.97438 * 16 15 13 35 35 H 1.07995 * 120.34980 * 180.26910 * 17 16 15 36 36 H 1.08995 * 109.47473 * 274.43365 * 25 24 23 37 37 H 1.09010 * 109.46716 * 34.43392 * 25 24 23 38 38 H 1.08999 * 109.47009 * 154.42692 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1899 1.2930 -1.1750 6 1 5.2610 1.4295 -1.1972 7 6 3.5065 0.9654 -2.3409 8 7 2.1999 0.8320 -2.3209 9 14 4.4467 0.7152 -3.9356 10 1 5.8972 0.9208 -3.6926 11 1 4.2195 -0.6655 -4.4327 12 1 3.9709 1.6907 -4.9491 13 6 4.1785 1.5896 1.1587 14 8 5.3912 1.6765 1.1500 15 6 3.4432 1.6454 2.4387 16 6 2.4928 2.6480 2.6712 17 6 1.8278 2.6524 3.8843 18 6 2.1276 1.6824 4.8244 19 6 1.4099 1.6878 6.1496 20 9 1.9501 0.6973 6.9766 21 9 1.5635 2.9383 6.7579 22 9 0.0497 1.4331 5.9442 23 7 3.0318 0.7531 4.5803 24 6 3.6874 0.7033 3.4393 25 6 4.7108 -0.3795 3.2123 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 1.7232 0.6038 -3.1342 34 1 2.2817 3.3959 1.9211 35 1 1.0855 3.4073 4.0969 36 1 5.6704 -0.0640 3.6217 37 1 4.3874 -1.2948 3.7083 38 1 4.8145 -0.5629 2.1429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299124431.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:01 Heat of formation + Delta-G solvation = -145.034273 kcal Electronic energy + Delta-G solvation = -27389.898381 eV Core-core repulsion = 23010.885236 eV Total energy + Delta-G solvation = -4379.013145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -51.22458 -48.73906 -48.68724 -41.97152 -40.07470 -37.41157 -34.50191 -34.44179 -33.60085 -33.19511 -29.49572 -28.47033 -27.42024 -26.11586 -24.16348 -23.63639 -22.31822 -21.43461 -19.67909 -19.60800 -19.36372 -19.04407 -18.35833 -17.57868 -16.95299 -16.13391 -15.77456 -15.69179 -15.55544 -15.42560 -15.36822 -15.33374 -15.15696 -15.12802 -14.84129 -14.83415 -14.46739 -14.12382 -13.85853 -13.62034 -13.51093 -13.24124 -13.19540 -12.91964 -12.77464 -12.42431 -12.22605 -12.12442 -11.95807 -11.63504 -11.11745 -11.03933 -10.69870 -10.47627 -10.21503 -9.68646 -8.20539 -5.91742 -0.62027 -0.06804 1.32663 1.35441 1.45828 1.56775 1.80944 2.17732 2.32103 2.39065 2.77884 2.90414 3.10075 3.30424 3.38520 3.57639 3.65587 3.83976 3.99647 4.30084 4.35272 4.47521 4.54960 4.60844 4.65351 4.69495 4.88033 4.91867 4.97992 5.11022 5.27525 5.27645 5.37630 5.45105 5.66305 5.91614 6.04368 6.42917 6.49357 7.10698 7.38391 7.91527 8.60779 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004091 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.712258 B = 6843.085762 C = 7402.785858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.117 3.883 4 N -0.429 5.429 5 C -0.334 4.334 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.862 5.862 9 Si 0.990 3.010 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.269 1.269 13 C 0.463 3.537 14 O -0.626 6.626 15 C -0.121 4.121 16 C -0.051 4.051 17 C -0.113 4.113 18 C 0.026 3.974 19 C 0.534 3.466 20 F -0.170 7.170 21 F -0.165 7.165 22 F -0.166 7.166 23 N -0.457 5.457 24 C 0.153 3.847 25 C -0.094 4.094 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.011 0.989 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.274 0.726 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 1.828 9.603 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.148 4.148 3 C -0.005 4.005 4 N -0.143 5.143 5 C -0.461 4.461 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.501 5.501 9 Si 0.814 3.186 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.194 1.194 13 C 0.252 3.748 14 O -0.515 6.515 15 C -0.127 4.127 16 C -0.077 4.077 17 C -0.133 4.133 18 C -0.114 4.114 19 C 0.478 3.522 20 F -0.151 7.151 21 F -0.147 7.147 22 F -0.148 7.148 23 N -0.166 5.166 24 C 0.014 3.986 25 C -0.151 4.151 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.206 0.794 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.272 1.194 10.069 12.478 hybrid contribution 0.384 0.364 -1.271 1.376 sum -6.888 1.558 8.798 11.282 Atomic orbital electron populations 1.21477 0.94477 1.01045 1.01330 1.21805 0.96436 0.97034 0.99529 1.22147 0.78173 0.98385 1.01759 1.43997 1.07145 1.58296 1.04909 1.19777 0.93526 1.47051 0.85779 0.90307 1.25918 0.96818 0.95500 1.01613 1.70203 1.06480 1.44391 1.29046 0.84906 0.77982 0.78239 0.77426 1.20462 1.19862 1.19435 1.17944 0.86889 0.86386 0.83603 1.90605 1.14998 1.58841 1.87030 1.21170 0.97784 0.97632 0.96079 1.21989 0.91833 0.96508 0.97347 1.21976 1.00548 0.98799 0.91937 1.21255 0.98435 0.96265 0.95408 1.17621 0.76860 0.74067 0.83609 1.93211 1.85809 1.62126 1.73962 1.93238 1.95436 1.41526 1.84460 1.93243 1.32615 1.93926 1.94985 1.66967 1.06006 1.22622 1.21006 1.21322 0.94961 0.95266 0.87091 1.20663 0.96261 0.95854 1.02350 0.93064 0.92944 0.92483 0.90919 0.97040 0.92428 0.87422 0.91478 0.81590 0.79373 0.89424 0.88637 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.91 71.98 0.71 -3.25 16 2 C -0.11 -4.35 5.48 30.59 0.17 -4.19 16 3 C 0.12 4.82 4.56 86.38 0.39 5.22 16 4 N -0.43 -20.67 2.63 -638.96 -1.68 -22.35 16 5 C -0.33 -17.49 9.51 84.10 0.80 -16.69 16 6 H 0.08 4.50 7.18 -2.91 -0.02 4.48 16 7 C 0.00 0.20 5.25 84.96 0.45 0.65 16 8 N -0.86 -39.11 7.18 21.68 0.16 -38.95 16 9 Si 0.99 39.22 29.55 68.60 2.03 41.25 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 13 C 0.46 22.01 5.83 86.75 0.51 22.52 16 14 O -0.63 -34.36 15.99 -4.00 -0.06 -34.42 16 15 C -0.12 -4.64 4.95 -20.00 -0.10 -4.74 16 16 C -0.05 -1.52 7.71 22.74 0.18 -1.34 16 17 C -0.11 -2.76 9.59 22.33 0.21 -2.55 16 18 C 0.03 0.74 6.27 42.58 0.27 1.00 16 19 C 0.53 13.10 3.31 71.24 0.24 13.33 16 20 F -0.17 -4.60 16.84 44.97 0.76 -3.85 16 21 F -0.17 -3.69 17.15 44.97 0.77 -2.92 16 22 F -0.17 -3.82 17.28 44.97 0.78 -3.05 16 23 N -0.46 -15.22 9.63 -170.98 -1.65 -16.86 16 24 C 0.15 5.58 6.82 42.91 0.29 5.87 16 25 C -0.09 -3.27 9.56 71.24 0.68 -2.59 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 3.32 5.86 -2.39 -0.01 3.30 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 2.04 4.25 -2.39 -0.01 2.03 16 32 H 0.11 4.75 5.89 -2.38 -0.01 4.74 16 33 H 0.27 11.67 8.31 -92.71 -0.77 10.90 16 34 H 0.17 4.39 7.43 -2.91 -0.02 4.37 16 35 H 0.19 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.06 2.38 6.73 -2.39 -0.02 2.37 16 Total: -1.00 -59.12 328.89 7.00 -52.12 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.11 Total: 15.78 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 4.79 Total: 13.25 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.17 Total: -78.16 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.06 Total: -34.42 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.31 Total: -9.81 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -59.12 7.00 -52.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299124431.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.919 kcal (2) G-P(sol) polarization free energy of solvation -59.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds