Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00019 * 2 1 3 5 5 H 1.07998 * 120.00186 * 239.99969 * 4 2 1 6 6 C 1.37875 * 120.00000 * 60.00190 * 4 2 1 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00056 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46967 * 59.99876 * 8 6 4 10 10 H 1.48506 * 109.46889 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46760 * 299.99542 * 8 6 4 12 12 C 1.53007 * 109.47184 * 120.00240 * 2 1 3 13 13 N 1.46502 * 109.46947 * 299.99849 * 12 2 1 14 14 C 1.34774 * 119.99866 * 179.97438 * 13 12 2 15 15 O 1.21513 * 120.00240 * 0.02562 * 14 13 12 16 16 C 1.48172 * 119.99607 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.71823 * 180.02562 * 16 14 13 18 18 C 1.38595 * 119.05699 * 180.02562 * 17 16 14 19 19 C 1.38623 * 118.48634 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.32225 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.46897 * 90.00189 * 20 19 18 22 22 F 1.39894 * 109.47398 * 210.00306 * 20 19 18 23 23 F 1.39902 * 109.47418 * 330.00195 * 20 19 18 24 24 C 1.38556 * 119.35381 * 0.02562 * 19 18 17 25 25 N 1.31515 * 120.90624 * 0.02562 * 24 19 18 26 26 H 1.09002 * 109.47521 * 299.99960 * 1 2 3 27 27 H 1.09000 * 109.47301 * 59.99947 * 1 2 3 28 28 H 1.09000 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46900 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47001 * 300.00236 * 3 2 1 31 31 H 1.09002 * 109.47015 * 60.00368 * 3 2 1 32 32 H 0.97005 * 119.99967 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47000 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47045 * 59.99691 * 12 2 1 35 35 H 0.97004 * 119.99968 * 0.02562 * 13 12 2 36 36 H 1.08000 * 120.47506 * 0.27259 * 17 16 14 37 37 H 1.07998 * 120.75242 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.54716 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8063 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8768 -0.4915 3.6695 15 8 2.5754 -1.4795 3.7810 16 6 1.3834 0.2074 4.8793 17 6 1.7235 -0.2736 6.1417 18 6 1.2540 0.3904 7.2640 19 6 0.4608 1.5130 7.0845 20 6 -0.0715 2.2669 8.2758 21 9 0.8411 3.2613 8.6442 22 9 -1.2960 2.8571 7.9451 23 9 -0.2537 1.3823 9.3442 24 6 0.1623 1.9352 5.7990 25 7 0.6203 1.2857 4.7512 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7081 1.1609 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3565 36 1 2.3474 -1.1491 6.2445 37 1 1.5011 0.0415 8.2557 38 1 -0.4557 2.8092 5.6555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316260783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = -156.137548 kcal Electronic energy + Delta-G solvation = -25888.213989 eV Core-core repulsion = 21508.719370 eV Total energy + Delta-G solvation = -4379.494620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.57003 -48.08680 -48.02647 -40.94238 -38.97500 -36.44147 -33.89583 -33.11884 -32.26513 -30.85863 -27.45676 -25.72798 -25.60828 -24.95930 -24.31630 -23.15385 -20.75863 -19.04173 -18.92515 -18.89256 -18.80085 -17.97938 -16.88401 -15.89208 -15.35211 -15.27074 -15.06053 -14.88589 -14.83475 -14.75618 -14.47441 -14.31689 -14.22117 -14.17745 -13.98841 -13.66025 -13.29414 -12.92822 -12.79274 -12.28207 -12.20471 -11.40460 -11.20530 -10.86804 -10.74887 -10.59218 -10.42420 -10.40041 -10.20020 -9.81737 -9.78576 -9.65229 -9.33139 -8.81636 -8.54337 -8.36265 -6.03143 -4.13825 -0.02668 0.69889 2.17010 2.54254 3.15681 3.29276 3.33837 3.34017 3.39499 3.53867 3.54408 3.88974 3.98607 4.20169 4.37856 4.53488 4.55417 4.84336 5.23506 5.23602 5.34756 5.48303 5.95433 6.15745 6.25354 6.48172 6.67434 6.84240 6.87066 6.94830 7.00065 7.21718 7.33672 7.54730 7.67927 7.92049 7.99733 8.11704 8.34472 8.46534 8.86330 9.52075 10.98216 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.002589 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.675346 B =10812.769097 C =11355.729606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.057 3.943 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.687 5.687 14 C 0.552 3.448 15 O -0.538 6.538 16 C 0.124 3.876 17 C -0.118 4.118 18 C -0.028 4.028 19 C -0.232 4.232 20 C 0.517 3.483 21 F -0.173 7.173 22 F -0.172 7.172 23 F -0.175 7.175 24 C 0.155 3.845 25 N -0.452 5.452 26 H 0.008 0.992 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.411 0.589 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 3.823 21.051 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.005 3.995 13 N -0.336 5.336 14 C 0.335 3.665 15 O -0.416 6.416 16 C -0.014 4.014 17 C -0.139 4.139 18 C -0.054 4.054 19 C -0.235 4.235 20 C 0.462 3.538 21 F -0.154 7.154 22 F -0.154 7.154 23 F -0.156 7.156 24 C -0.005 4.005 25 N -0.163 5.163 26 H 0.027 0.973 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.476 3.520 20.070 20.526 hybrid contribution 0.123 -0.176 0.236 0.320 sum -2.352 3.344 20.306 20.713 Atomic orbital electron populations 1.21843 0.97633 0.99221 1.00311 1.18358 0.92919 0.92817 0.90297 1.21845 0.98562 0.98287 1.00307 1.20932 1.31712 1.12190 0.89857 0.92430 1.24876 0.94819 0.94903 0.98843 1.69798 1.36462 1.22692 1.23384 0.86624 0.79224 0.79783 0.82168 1.20279 1.21318 1.20274 1.21898 0.98459 0.96003 0.83125 1.46274 1.50632 1.31411 1.05325 1.17809 0.81483 0.84199 0.83014 1.90782 1.38553 1.25895 1.86381 1.21855 0.93107 0.91686 0.94793 1.22193 0.99534 1.01225 0.90955 1.21436 0.91781 0.91492 1.00698 1.21253 1.06542 1.00858 0.94888 1.18019 0.75729 0.77468 0.82561 1.93253 1.66804 1.62913 1.92450 1.93218 1.44960 1.84838 1.92344 1.93208 1.95236 1.68453 1.58731 1.22707 0.94338 0.97695 0.85772 1.67853 1.08657 1.06479 1.33300 0.97283 0.89505 0.95431 0.95433 0.89503 0.97290 0.92900 0.92173 0.92180 0.75193 0.82019 0.82785 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.64 4.50 -4.04 -0.02 2.63 16 13 N -0.69 -12.39 4.95 -61.14 -0.30 -12.69 16 14 C 0.55 9.45 7.81 -12.18 -0.10 9.36 16 15 O -0.54 -10.46 16.32 5.35 0.09 -10.37 16 16 C 0.12 1.69 6.75 -83.01 -0.56 1.13 16 17 C -0.12 -1.27 9.63 -39.05 -0.38 -1.65 16 18 C -0.03 -0.24 9.51 -39.31 -0.37 -0.61 16 19 C -0.23 -2.08 5.47 -104.36 -0.57 -2.65 16 20 C 0.52 4.31 3.38 36.01 0.12 4.43 16 21 F -0.17 -1.54 17.30 2.25 0.04 -1.50 16 22 F -0.17 -1.48 16.48 2.25 0.04 -1.44 16 23 F -0.17 -1.46 16.52 2.25 0.04 -1.42 16 24 C 0.16 1.55 10.56 -17.57 -0.19 1.37 16 25 N -0.45 -5.82 9.54 -9.80 -0.09 -5.91 16 26 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 27 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 31 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.41 7.11 5.49 -40.82 -0.22 6.89 16 36 H 0.16 1.59 7.64 -52.49 -0.40 1.19 16 37 H 0.15 0.86 7.68 -52.49 -0.40 0.46 16 38 H 0.17 1.31 7.61 -52.49 -0.40 0.91 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -27.82 331.68 -5.61 -33.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.00 Total: 4.20 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.90 Total: -1.88 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.12 Total: -41.51 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.11 Total: -4.36 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.82 -5.61 -33.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316260783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.706 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds