Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00019 * 2 1 3 5 5 H 1.07998 * 120.00186 * 239.99969 * 4 2 1 6 6 C 1.37875 * 120.00000 * 60.00190 * 4 2 1 7 7 N 1.31517 * 119.99750 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00056 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46967 * 59.99876 * 8 6 4 10 10 H 1.48506 * 109.46889 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46760 * 299.99542 * 8 6 4 12 12 C 1.53007 * 109.47184 * 120.00240 * 2 1 3 13 13 N 1.46502 * 109.46947 * 299.99849 * 12 2 1 14 14 C 1.34774 * 119.99866 * 179.97438 * 13 12 2 15 15 O 1.21513 * 120.00240 * 0.02562 * 14 13 12 16 16 C 1.48172 * 119.99607 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.71823 * 180.02562 * 16 14 13 18 18 C 1.38595 * 119.05699 * 180.02562 * 17 16 14 19 19 C 1.38623 * 118.48634 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.32225 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.46897 * 90.00189 * 20 19 18 22 22 F 1.39894 * 109.47398 * 210.00306 * 20 19 18 23 23 F 1.39902 * 109.47418 * 330.00195 * 20 19 18 24 24 C 1.38556 * 119.35381 * 0.02562 * 19 18 17 25 25 N 1.31515 * 120.90624 * 0.02562 * 24 19 18 26 26 H 1.09002 * 109.47521 * 299.99960 * 1 2 3 27 27 H 1.09000 * 109.47301 * 59.99947 * 1 2 3 28 28 H 1.09000 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46900 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47001 * 300.00236 * 3 2 1 31 31 H 1.09002 * 109.47015 * 60.00368 * 3 2 1 32 32 H 0.97005 * 119.99967 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47000 * 179.97438 * 12 2 1 34 34 H 1.09000 * 109.47045 * 59.99691 * 12 2 1 35 35 H 0.97004 * 119.99968 * 0.02562 * 13 12 2 36 36 H 1.08000 * 120.47506 * 0.27259 * 17 16 14 37 37 H 1.07998 * 120.75242 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.54716 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2205 11 1 3.8063 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8768 -0.4915 3.6695 15 8 2.5754 -1.4795 3.7810 16 6 1.3834 0.2074 4.8793 17 6 1.7235 -0.2736 6.1417 18 6 1.2540 0.3904 7.2640 19 6 0.4608 1.5130 7.0845 20 6 -0.0715 2.2669 8.2758 21 9 0.8411 3.2613 8.6442 22 9 -1.2960 2.8571 7.9451 23 9 -0.2537 1.3823 9.3442 24 6 0.1623 1.9352 5.7990 25 7 0.6203 1.2857 4.7512 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7081 1.1609 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3565 36 1 2.3474 -1.1491 6.2445 37 1 1.5011 0.0415 8.2557 38 1 -0.4557 2.8092 5.6555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316260783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = -171.936308 kcal Electronic energy + Delta-G solvation = -25888.899075 eV Core-core repulsion = 21508.719370 eV Total energy + Delta-G solvation = -4380.179705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.23560 -48.74384 -48.69756 -41.91011 -40.28300 -38.15725 -35.21875 -34.34476 -33.14265 -32.63464 -28.50236 -27.57499 -27.37788 -26.51187 -25.15264 -24.09794 -22.00839 -20.64771 -19.82160 -19.57040 -19.52706 -19.18645 -17.88963 -17.68481 -16.69338 -16.58975 -16.45760 -16.06572 -15.60089 -15.55483 -15.40517 -15.13569 -15.12834 -14.90632 -14.83513 -14.78301 -14.52157 -14.36128 -14.34725 -13.99728 -13.20429 -13.10194 -13.01237 -12.68051 -12.62521 -12.26290 -12.13689 -11.57996 -11.49588 -11.38668 -11.25184 -10.82287 -10.70684 -10.66523 -10.39503 -10.01733 -8.01412 -6.17809 -0.90969 -0.06110 1.44751 1.45634 1.46335 1.46827 1.53165 2.03321 2.46980 2.49799 2.54908 2.85582 2.96685 3.22294 3.30898 3.50579 3.62303 3.74155 3.90650 4.37403 4.48773 4.51306 4.58606 4.67221 4.71687 4.95699 5.05232 5.09717 5.16687 5.18291 5.29762 5.51848 5.66044 5.67563 6.12855 6.20266 6.27204 6.42419 6.59655 6.86110 7.07353 7.50084 8.97572 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.002589 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.675346 B =10812.769097 C =11355.729606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.143 3.857 13 N -0.689 5.689 14 C 0.554 3.446 15 O -0.567 6.567 16 C 0.099 3.901 17 C -0.113 4.113 18 C -0.014 4.014 19 C -0.222 4.222 20 C 0.526 3.474 21 F -0.174 7.174 22 F -0.172 7.172 23 F -0.172 7.172 24 C 0.152 3.848 25 N -0.473 5.473 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.414 0.586 36 H 0.169 0.831 37 H 0.189 0.811 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 4.285 23.093 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.020 3.980 13 N -0.339 5.339 14 C 0.339 3.661 15 O -0.447 6.447 16 C -0.038 4.038 17 C -0.134 4.134 18 C -0.039 4.039 19 C -0.226 4.226 20 C 0.471 3.529 21 F -0.155 7.155 22 F -0.154 7.154 23 F -0.153 7.153 24 C -0.008 4.008 25 N -0.183 5.183 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.253 0.747 36 H 0.186 0.814 37 H 0.206 0.794 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.829 3.990 22.125 22.660 hybrid contribution 0.200 -0.279 -0.272 0.438 sum -2.628 3.711 21.854 22.322 Atomic orbital electron populations 1.21677 0.97246 0.98717 1.00264 1.18352 0.93181 0.92993 0.90350 1.21680 0.98000 0.97960 1.00261 1.21247 1.31888 1.12313 0.91390 0.93304 1.25473 0.95099 0.95567 1.01050 1.69913 1.36909 1.23350 1.23701 0.85795 0.78644 0.78795 0.79438 1.20173 1.20960 1.20160 1.21459 0.97578 0.95363 0.83639 1.46100 1.51143 1.31550 1.05063 1.18279 0.80498 0.83756 0.83583 1.90753 1.39745 1.27218 1.86959 1.21354 0.95480 0.93002 0.93982 1.22285 0.99261 1.01402 0.90419 1.21778 0.90231 0.90485 1.01413 1.21377 1.05701 1.00658 0.94826 1.17817 0.75585 0.77288 0.82233 1.93259 1.66891 1.62977 1.92423 1.93226 1.44971 1.84827 1.92342 1.93221 1.95208 1.68345 1.58535 1.23070 0.94185 0.97979 0.85615 1.67743 1.09166 1.06631 1.34799 0.94913 0.91806 0.96098 0.96095 0.91802 0.94920 0.93012 0.93355 0.93363 0.74723 0.81364 0.79389 0.78633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 4 C -0.53 -27.82 8.01 25.60 0.21 -27.61 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -48.12 9.35 21.45 0.20 -47.92 16 8 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.14 6.03 4.50 86.38 0.39 6.42 16 13 N -0.69 -24.79 4.95 -465.64 -2.30 -27.09 16 14 C 0.55 18.89 7.81 86.88 0.68 19.57 16 15 O -0.57 -22.20 16.32 -3.76 -0.06 -22.26 16 16 C 0.10 2.59 6.75 41.91 0.28 2.87 16 17 C -0.11 -2.19 9.63 22.61 0.22 -1.97 16 18 C -0.01 -0.18 9.51 22.45 0.21 0.03 16 19 C -0.22 -3.29 5.47 -19.70 -0.11 -3.40 16 20 C 0.53 7.09 3.38 71.24 0.24 7.33 16 21 F -0.17 -2.58 17.30 44.97 0.78 -1.80 16 22 F -0.17 -2.47 16.48 44.97 0.74 -1.73 16 23 F -0.17 -2.28 16.52 44.97 0.74 -1.54 16 24 C 0.15 2.67 10.56 84.82 0.90 3.57 16 25 N -0.47 -11.42 9.54 -184.92 -1.76 -13.19 16 26 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 27 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 31 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 32 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 14.10 5.49 -92.71 -0.51 13.59 16 36 H 0.17 3.01 7.64 -2.91 -0.02 2.99 16 37 H 0.19 1.26 7.68 -2.91 -0.02 1.24 16 38 H 0.20 2.42 7.61 -2.91 -0.02 2.40 16 Total: -1.00 -59.88 331.68 5.56 -54.32 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.61 Total: 15.55 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.59 Total: 1.30 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.87 Total: -88.19 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.06 Total: -22.26 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 2.26 Total: -5.07 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -59.88 5.56 -54.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316260783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.614 kcal (2) G-P(sol) polarization free energy of solvation -59.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds