Wall clock time and date at job start Tue Mar 31 2020 12:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46933 * 2 1 4 4 N 1.46901 * 109.47093 * 120.00265 * 2 1 3 5 5 C 1.46901 * 110.99847 * 274.99868 * 4 2 1 6 6 C 1.50696 * 109.47411 * 180.02562 * 5 4 2 7 7 O 1.21299 * 119.99451 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00477 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00063 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00297 * 0.02562 * 9 8 6 11 11 C 1.38953 * 120.00064 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00277 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99651 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46982 * 90.00157 * 13 11 9 15 15 H 1.48501 * 109.46843 * 209.99970 * 13 11 9 16 16 H 1.48496 * 109.47148 * 329.99625 * 13 11 9 17 17 C 1.50702 * 109.46868 * 239.99899 * 2 1 3 18 18 C 1.38258 * 120.00015 * 265.02212 * 17 2 1 19 19 C 1.38211 * 119.99754 * 180.02562 * 18 17 2 20 20 C 1.38262 * 120.00073 * 359.97070 * 19 18 17 21 21 C 1.38215 * 119.99667 * 359.75383 * 20 19 18 22 22 C 1.38211 * 119.99765 * 85.00095 * 17 2 1 23 23 C 1.50703 * 120.00060 * 0.02562 * 22 17 2 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 22 17 25 25 F 1.39900 * 109.47159 * 60.00143 * 23 22 17 26 26 F 1.39897 * 109.47274 * 299.99834 * 23 22 17 27 27 H 1.08998 * 109.47030 * 300.00092 * 1 2 3 28 28 H 1.08998 * 109.47034 * 59.99594 * 1 2 3 29 29 H 1.08997 * 109.47412 * 180.02562 * 1 2 3 30 30 H 1.00896 * 110.99728 * 38.94942 * 4 2 1 31 31 H 1.08998 * 109.46992 * 300.00080 * 5 4 2 32 32 H 1.09004 * 109.47429 * 59.99490 * 5 4 2 33 33 H 0.97003 * 119.99797 * 0.02562 * 8 6 5 34 34 H 0.97003 * 120.00144 * 180.02562 * 12 11 9 35 35 H 1.07994 * 119.99762 * 359.97438 * 18 17 2 36 36 H 1.07997 * 119.99803 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.99632 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.99260 * 180.27051 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5215 3.5557 7 8 2.8697 -1.6983 3.4696 8 7 2.7297 0.1208 4.7322 9 6 3.1895 -0.5563 5.8319 10 1 3.4391 -1.6043 5.7556 11 6 3.3355 0.1060 7.0447 12 7 3.7768 -0.5429 8.0988 13 14 2.9045 1.9188 7.1766 14 1 1.4755 2.0616 7.5543 15 1 3.7564 2.5560 8.2128 16 1 3.1392 2.5799 5.8678 17 6 2.0323 -0.7104 -1.2305 18 6 2.3607 -2.0520 -1.1685 19 6 2.8218 -2.7034 -2.2969 20 6 2.9542 -2.0136 -3.4878 21 6 2.6205 -0.6738 -3.5511 22 6 2.1643 -0.0209 -2.4210 23 6 1.8064 1.4414 -2.4885 24 9 2.0225 1.9150 -3.7871 25 9 2.6057 2.1590 -1.5921 26 9 0.4596 1.6081 -2.1490 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.4495 -1.4979 1.4100 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6164 2.5525 33 1 2.5052 1.0619 4.8009 34 1 3.8784 -0.0806 8.9455 35 1 2.2576 -2.5907 -0.2382 36 1 3.0787 -3.7513 -2.2484 37 1 3.3149 -2.5225 -4.3694 38 1 2.7198 -0.1361 -4.4824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342015257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:43 Heat of formation + Delta-G solvation = -148.553307 kcal Electronic energy + Delta-G solvation = -26513.558158 eV Core-core repulsion = 22134.392416 eV Total energy + Delta-G solvation = -4379.165742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.42642 -47.93979 -47.84109 -39.93953 -38.47729 -36.41205 -33.97995 -32.43894 -31.75723 -31.46876 -29.44041 -26.64078 -26.12297 -24.22957 -23.56414 -22.09096 -20.78371 -19.45861 -18.73094 -18.66592 -18.61495 -18.21831 -16.59575 -15.92495 -15.47633 -15.31688 -15.05042 -14.82838 -14.79605 -14.69675 -14.39847 -14.22964 -14.16853 -13.98507 -13.74616 -13.43344 -13.37971 -13.07696 -12.87038 -12.59170 -12.46161 -12.11124 -12.03094 -11.70438 -11.62162 -11.22986 -11.16261 -10.98791 -10.59747 -9.98318 -9.58091 -9.39589 -9.02758 -8.64870 -8.23717 -8.17587 -6.31898 -3.83364 0.74623 1.09842 2.46579 3.03128 3.06664 3.15139 3.31010 3.51730 3.72537 3.83460 3.94611 4.10009 4.22295 4.46590 4.66804 4.78719 4.82304 4.98760 5.05892 5.13573 5.20709 5.26635 5.44472 5.54480 5.56842 5.66464 5.76824 5.82140 5.91525 5.99350 6.05013 6.20795 6.23852 6.60812 7.00465 7.47181 7.57088 8.13286 8.58619 8.93888 9.41493 9.81137 10.81154 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003235 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.931415 B = 8653.377051 C = 9498.352418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.101 3.899 3 H 0.096 0.904 4 N -0.657 5.657 5 C 0.047 3.953 6 C 0.451 3.549 7 O -0.565 6.565 8 N -0.589 5.589 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.881 5.881 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.013 4.013 18 C -0.094 4.094 19 C -0.088 4.088 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.187 4.187 23 C 0.507 3.493 24 F -0.179 7.179 25 F -0.173 7.173 26 F -0.172 7.172 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.353 0.647 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.371 0.629 34 H 0.273 0.727 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 3.599 -24.411 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.010 4.010 3 H 0.113 0.887 4 N -0.289 5.289 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.447 6.447 8 N -0.229 5.229 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.161 4.161 12 N -0.521 5.521 13 Si 0.705 3.295 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.194 1.194 17 C -0.014 4.014 18 C -0.112 4.112 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.095 4.095 22 C -0.189 4.189 23 C 0.453 3.547 24 F -0.161 7.161 25 F -0.154 7.154 26 F -0.154 7.154 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.465 2.918 -24.366 25.141 hybrid contribution -1.188 1.878 0.546 2.289 sum -6.654 4.796 -23.819 25.192 Atomic orbital electron populations 1.22819 0.95359 1.03163 1.04024 1.20737 0.93504 0.98065 0.88654 0.88659 1.60152 1.57480 1.09105 1.02206 1.21750 1.00237 0.95832 0.90717 1.19647 0.84807 0.88227 0.83671 1.90560 1.53927 1.16010 1.84215 1.42197 1.60063 1.11083 1.09545 1.19428 1.40375 0.97931 0.85663 0.86263 1.25037 0.97422 0.98405 0.95251 1.69618 1.45009 1.36626 1.00839 0.86678 0.79272 0.84953 0.78550 1.19642 1.20141 1.19427 1.19598 0.94876 0.94411 0.92514 1.21148 0.97495 0.93409 0.99181 1.21464 0.96145 1.00432 0.92516 1.21122 1.01179 0.93845 0.98580 1.20899 0.96427 0.95163 0.97022 1.19748 1.10697 0.91453 0.96998 1.18383 0.74631 0.88220 0.73419 1.93152 1.94575 1.90136 1.38216 1.93198 1.73754 1.80474 1.68022 1.93108 1.34274 1.96208 1.91789 0.91749 0.90035 0.91928 0.82669 0.89316 0.93409 0.79661 0.91597 0.83840 0.85070 0.85134 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 8.93 37.16 0.33 -1.77 16 2 C 0.10 1.26 2.14 -68.86 -0.15 1.11 16 3 H 0.10 1.22 5.41 -51.93 -0.28 0.94 16 4 N -0.66 -9.92 4.88 -109.22 -0.53 -10.45 16 5 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 6 C 0.45 10.12 7.82 -10.99 -0.09 10.03 16 7 O -0.57 -14.88 15.78 5.54 0.09 -14.79 16 8 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 9 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 10 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 11 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 12 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 13 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 17 C -0.01 -0.16 5.03 -104.62 -0.53 -0.68 16 18 C -0.09 -1.07 9.32 -39.58 -0.37 -1.44 16 19 C -0.09 -0.81 10.05 -39.58 -0.40 -1.21 16 20 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 21 C -0.08 -0.71 9.43 -39.59 -0.37 -1.09 16 22 C -0.19 -2.06 5.37 -104.63 -0.56 -2.62 16 23 C 0.51 5.58 2.83 36.01 0.10 5.68 16 24 F -0.18 -1.86 15.97 2.25 0.04 -1.83 16 25 F -0.17 -2.11 15.33 2.25 0.03 -2.08 16 26 F -0.17 -1.87 13.60 2.25 0.03 -1.84 16 27 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 28 H 0.08 0.84 5.01 -51.93 -0.26 0.58 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.35 5.33 7.60 -39.29 -0.30 5.03 16 31 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 32 H 0.05 0.68 7.44 -51.93 -0.39 0.29 16 33 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.14 1.71 6.89 -52.49 -0.36 1.35 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 1.00 7.16 -52.49 -0.38 0.62 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -31.99 326.37 -5.95 -37.95 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -3.83 Total: 12.90 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.70 Total: -0.44 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.19 Total: -49.44 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.10 Total: -5.74 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.99 -5.95 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342015257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.608 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds